RNA–Protein interactions for RNA: ENST00000469585.5

PTCD3-208, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 2

Gene PTCD3, Length 885 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-208ENST00000469585 CEACAM3P40198 252 aa5.07□□□□□ -1.6
PTCD3-208ENST00000469585 PRRX1P54821 245 aa5.07□□□□□ -1.6
PTCD3-208ENST00000469585 ERVFC1-1P60608 527 aa5.07□□□□□ -1.6
PTCD3-208ENST00000469585 PAX8Q06710 450 aa5.07□□□□□ -1.6
PTCD3-208ENST00000469585 BAMBIQ13145 260 aa5.07□□□□□ -1.6
PTCD3-208ENST00000469585 DYNC1I2Q13409 638 aaKnown RBP5.07□□□□□ -1.6
PTCD3-208ENST00000469585 ZNF146Q15072 292 aa5.07□□□□□ -1.6
PTCD3-208ENST00000469585 RAB11BQ15907 218 aa5.07□□□□□ -1.6
PTCD3-208ENST00000469585 KCTD21Q4G0X4 260 aa5.07□□□□□ -1.6
PTCD3-208ENST00000469585 KRBOX4Q5JUW0 171 aa5.07□□□□□ -1.6
PTCD3-208ENST00000469585 ZNF773Q6PK81 442 aa5.07□□□□□ -1.6
PTCD3-208ENST00000469585 GLIPR1L1Q6UWM5 242 aa5.07□□□□□ -1.6
PTCD3-208ENST00000469585 USP43Q70EL4 1123 aa5.07□□□□□ -1.6
PTCD3-208ENST00000469585 VMO1Q7Z5L0 202 aa5.07□□□□□ -1.6
PTCD3-208ENST00000469585 BATF2Q8N1L9 274 aa5.07□□□□□ -1.6
PTCD3-208ENST00000469585 OR6M1Q8NGM8 313 aa5.07□□□□□ -1.6
PTCD3-208ENST00000469585 OR10AC1Q8NH08 325 aa5.07□□□□□ -1.6
PTCD3-208ENST00000469585 KCNG3Q8TAE7 436 aa5.07□□□□□ -1.6
PTCD3-208ENST00000469585 NDNFQ8TB73 568 aa5.07□□□□□ -1.6
PTCD3-208ENST00000469585 ZFAND2BQ8WV99 257 aa5.07□□□□□ -1.6
PTCD3-208ENST00000469585 TMEM203Q969S6 136 aa5.07□□□□□ -1.6
PTCD3-208ENST00000469585 UPRTQ96BW1 309 aa5.07□□□□□ -1.6
PTCD3-208ENST00000469585 ZNF488Q96MN9 340 aa5.07□□□□□ -1.6
PTCD3-208ENST00000469585 DERL3Q96Q80 235 aa5.07□□□□□ -1.6
PTCD3-208ENST00000469585 TMEM59Q9BXS4 323 aa5.07□□□□□ -1.6
PTCD3-208ENST00000469585 DUSP21Q9H596 190 aa5.07□□□□□ -1.6
PTCD3-208ENST00000469585 HES4Q9HCC6 221 aa5.07□□□□□ -1.6
PTCD3-208ENST00000469585 RAB18Q9NP72 206 aa5.07□□□□□ -1.6
PTCD3-208ENST00000469585 RBFOX1Q9NWB1 397 aaKnown RBP5.07□□□□□ -1.6
PTCD3-208ENST00000469585 IL36GQ9NZH8 169 aa5.07□□□□□ -1.6
PTCD3-208ENST00000469585 MTCH1Q9NZJ7 389 aa5.07□□□□□ -1.6
PTCD3-208ENST00000469585 ABRACLQ9P1F3 81 aa5.07□□□□□ -1.6
PTCD3-208ENST00000469585 ST3GAL6Q9Y274 331 aa5.07□□□□□ -1.6
PTCD3-208ENST00000469585 AMMECR1Q9Y4X0 333 aaPredicted RBP5.07□□□□□ -1.6
PTCD3-208ENST00000469585 LINC00312Q9Y6C7 94 aa5.07□□□□□ -1.6
PTCD3-208ENST00000469585 CSMD2Q7Z408 3487 aa5.07□□□□□ -1.6
PTCD3-208ENST00000469585 NBPF19A0A087WUL8 3843 aa5.07□□□□□ -1.6
PTCD3-208ENST00000469585 MEIKINA0A087WXM9 373 aa5.06□□□□□ -1.6
PTCD3-208ENST00000469585 IGHV1-69DA0A0B4J2H0 117 aa5.06□□□□□ -1.6
PTCD3-208ENST00000469585 IGKV1-9A0A0C4DH69 117 aa5.06□□□□□ -1.6
PTCD3-208ENST00000469585 TMEM30CPA0ZSE6 113 aa5.06□□□□□ -1.6
PTCD3-208ENST00000469585 METTL21EPA6NDL7 271 aa5.06□□□□□ -1.6
PTCD3-208ENST00000469585 GABRPO00591 440 aa5.06□□□□□ -1.6
PTCD3-208ENST00000469585 GPX5O75715 221 aa5.06□□□□□ -1.6
PTCD3-208ENST00000469585 CLPXO76031 633 aa5.06□□□□□ -1.6
PTCD3-208ENST00000469585 IGHV1-69P01742 117 aa5.06□□□□□ -1.6
PTCD3-208ENST00000469585 ZNF728P0DKX0 622 aa5.06□□□□□ -1.6
PTCD3-208ENST00000469585 IL3RAP26951 378 aa5.06□□□□□ -1.6
PTCD3-208ENST00000469585 ERP29P30040 261 aaKnown RBP5.06□□□□□ -1.6
PTCD3-208ENST00000469585 GLP1RP43220 463 aa5.06□□□□□ -1.6
PTCD3-208ENST00000469585 OR3A4PP47883 348 aa5.06□□□□□ -1.6
PTCD3-208ENST00000469585 UBE2E1P51965 193 aa5.06□□□□□ -1.6
PTCD3-208ENST00000469585 RBM11P57052 281 aaKnown RBP5.06□□□□□ -1.6
PTCD3-208ENST00000469585 ERVK11-1P61568 191 aa5.06□□□□□ -1.6
PTCD3-208ENST00000469585 SNRPEP62304 92 aaKnown RBP5.06□□□□□ -1.6
PTCD3-208ENST00000469585 RPL24P83731 157 aaKnown RBP5.06□□□□□ -1.6
PTCD3-208ENST00000469585 TPBGQ13641 420 aa5.06□□□□□ -1.6
PTCD3-208ENST00000469585 ARL6IP1Q15041 203 aa5.06□□□□□ -1.6
PTCD3-208ENST00000469585 NEDD8Q15843 81 aa5.06□□□□□ -1.6
PTCD3-208ENST00000469585 DGUOKQ16854 277 aa5.06□□□□□ -1.6
PTCD3-208ENST00000469585 C6orf183Q5T699 404 aa5.06□□□□□ -1.6
PTCD3-208ENST00000469585 RUSC1-AS1Q66K80 236 aa5.06□□□□□ -1.6
PTCD3-208ENST00000469585 ELP2Q6IA86 826 aa5.06□□□□□ -1.6
PTCD3-208ENST00000469585 TEX38Q6PEX7 206 aa5.06□□□□□ -1.6
PTCD3-208ENST00000469585 ZNF841Q6ZN19 808 aa5.06□□□□□ -1.6
PTCD3-208ENST00000469585 RTN4RL2Q86UN3 420 aa5.06□□□□□ -1.6
PTCD3-208ENST00000469585 TSPAN14Q8NG11 270 aa5.06□□□□□ -1.6
PTCD3-208ENST00000469585 OR4M1Q8NGD0 313 aa5.06□□□□□ -1.6
PTCD3-208ENST00000469585 OR51T1Q8NGJ9 327 aa5.06□□□□□ -1.6
PTCD3-208ENST00000469585 C8orf46Q8TAG6 207 aa5.06□□□□□ -1.6
PTCD3-208ENST00000469585 ZNF596Q8TC21 504 aa5.06□□□□□ -1.6
PTCD3-208ENST00000469585 RPS4Y2Q8TD47 263 aa5.06□□□□□ -1.6
PTCD3-208ENST00000469585 SSMEM1Q8WWF3 244 aa5.06□□□□□ -1.6
PTCD3-208ENST00000469585 AKR1E2Q96JD6 320 aa5.06□□□□□ -1.6
PTCD3-208ENST00000469585 PGLYRP3Q96LB9 341 aa5.06□□□□□ -1.6
PTCD3-208ENST00000469585 KCTD7Q96MP8 289 aa5.06□□□□□ -1.6
PTCD3-208ENST00000469585 OR5M11Q96RB7 305 aa5.06□□□□□ -1.6
PTCD3-208ENST00000469585 SELENOIQ9C0D9 397 aa5.06□□□□□ -1.6
PTCD3-208ENST00000469585 CHST6Q9GZX3 395 aa5.06□□□□□ -1.6
PTCD3-208ENST00000469585 PPA2Q9H2U2 334 aa5.06□□□□□ -1.6
PTCD3-208ENST00000469585 SLA2Q9H6Q3 261 aa5.06□□□□□ -1.6
PTCD3-208ENST00000469585 MMP26Q9NRE1 261 aa5.06□□□□□ -1.6
PTCD3-208ENST00000469585 PLEKHJ1Q9NW61 149 aa5.06□□□□□ -1.6
PTCD3-208ENST00000469585 TAS2R3Q9NYW6 316 aa5.06□□□□□ -1.6
PTCD3-208ENST00000469585 CTSZQ9UBR2 303 aa5.06□□□□□ -1.6
PTCD3-208ENST00000469585 PITPNC1Q9UKF7 332 aa5.06□□□□□ -1.6
PTCD3-208ENST00000469585 TRAPPC2LQ9UL33 140 aa5.06□□□□□ -1.6
PTCD3-208ENST00000469585 MGAT4AQ9UM21 535 aa5.06□□□□□ -1.6
PTCD3-208ENST00000469585 MAP1AP78559 2803 aaPredicted RBP5.06□□□□□ -1.6
PTCD3-208ENST00000469585 HIVEP1P15822 2718 aa5.06□□□□□ -1.6
PTCD3-208ENST00000469585 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP5.06□□□□□ -1.62e-7■■■■■ 38.2
PTCD3-208ENST00000469585 ACANP16112 2415 aa5.05□□□□□ -1.6
PTCD3-208ENST00000469585 CSPG4Q6UVK1 2322 aa5.05□□□□□ -1.6
PTCD3-208ENST00000469585 IGKV1-27A0A075B6S5 117 aa5.05□□□□□ -1.6
PTCD3-208ENST00000469585 IGHV3OR16-10A0A075B7F0 116 aa5.05□□□□□ -1.6
PTCD3-208ENST00000469585 LOC100506127A0A0U1RQW1 187 aa5.05□□□□□ -1.6
PTCD3-208ENST00000469585 MEIOCA2RUB1 952 aa5.05□□□□□ -1.6
PTCD3-208ENST00000469585 ZNF729A6NN14 1252 aaPredicted RBP5.05□□□□□ -1.6
PTCD3-208ENST00000469585 AIPO00170 330 aa5.05□□□□□ -1.6
PTCD3-208ENST00000469585 NPFFO15130 113 aa5.05□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 51.5 ms