RNA–Protein interactions for RNA: ENST00000468534.1

CCDC88A-210, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 536 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-210ENST00000468534 SMAD5-AS1Q9Y6J3 95 aa3.75□□□□□ -1.81
CCDC88A-210ENST00000468534 NALCNQ8IZF0 1738 aa3.75□□□□□ -1.81
CCDC88A-210ENST00000468534 TONSLQ96HA7 1378 aa3.75□□□□□ -1.81
CCDC88A-210ENST00000468534 IGLV1-36A0A0B4J1U3 117 aa3.74□□□□□ -1.81
CCDC88A-210ENST00000468534 DUXBA0A1W2PPF3 345 aa3.74□□□□□ -1.81
CCDC88A-210ENST00000468534 CIB4A0PJX0 185 aa3.74□□□□□ -1.81
CCDC88A-210ENST00000468534 MSGN1A6NI15 193 aa3.74□□□□□ -1.81
CCDC88A-210ENST00000468534 TNFSF12O43508 249 aa3.74□□□□□ -1.81
CCDC88A-210ENST00000468534 ZNF354AO60765 605 aaPredicted RBP3.74□□□□□ -1.81
CCDC88A-210ENST00000468534 NPHP4O75161 1426 aaPredicted RBP3.74□□□□□ -1.81
CCDC88A-210ENST00000468534 PDCD6O75340 191 aa3.74□□□□□ -1.81
CCDC88A-210ENST00000468534 SPAG7O75391 227 aa3.74□□□□□ -1.81
CCDC88A-210ENST00000468534 SCRG1O75711 98 aa3.74□□□□□ -1.81
CCDC88A-210ENST00000468534 SCTP09683 121 aa3.74□□□□□ -1.81
CCDC88A-210ENST00000468534 SMIM17P0DL12 118 aa3.74□□□□□ -1.81
CCDC88A-210ENST00000468534 CPMP14384 443 aa3.74□□□□□ -1.81
CCDC88A-210ENST00000468534 CSRP1P21291 193 aaKnown RBP3.74□□□□□ -1.81
CCDC88A-210ENST00000468534 KRTAP5-9P26371 169 aa3.74□□□□□ -1.81
CCDC88A-210ENST00000468534 CXCL12P48061 93 aa3.74□□□□□ -1.81
CCDC88A-210ENST00000468534 LMO4P61968 165 aa3.74□□□□□ -1.81
CCDC88A-210ENST00000468534 RPL24P83731 157 aaKnown RBP3.74□□□□□ -1.81
CCDC88A-210ENST00000468534 CDK6Q00534 326 aa3.74□□□□□ -1.81
CCDC88A-210ENST00000468534 ZNF763Q0D2J5 394 aa3.74□□□□□ -1.81
CCDC88A-210ENST00000468534 CPSF1Q10570 1443 aaKnown RBP3.74□□□□□ -1.81
CCDC88A-210ENST00000468534 IL15RAQ13261 267 aa3.74□□□□□ -1.81
CCDC88A-210ENST00000468534 ZNF266Q14584 549 aa3.74□□□□□ -1.81
CCDC88A-210ENST00000468534 KLF17Q5JT82 389 aaPredicted RBP3.74□□□□□ -1.81
CCDC88A-210ENST00000468534 LDLRAD2Q5SZI1 272 aa3.74□□□□□ -1.81
CCDC88A-210ENST00000468534 IBA57Q5T440 356 aaKnown RBP3.74□□□□□ -1.81
CCDC88A-210ENST00000468534 PRSS54Q6PEW0 395 aa3.74□□□□□ -1.81
CCDC88A-210ENST00000468534 UGT2A3Q6UWM9 527 aa3.74□□□□□ -1.81
CCDC88A-210ENST00000468534 Q6ZN92 141 aa3.74□□□□□ -1.81
CCDC88A-210ENST00000468534 C11orf53Q8IXP5 236 aa3.74□□□□□ -1.81
CCDC88A-210ENST00000468534 OR8I2Q8N0Y5 310 aa3.74□□□□□ -1.81
CCDC88A-210ENST00000468534 ZCCHC24Q8N2G6 241 aaKnown RBP3.74□□□□□ -1.81
CCDC88A-210ENST00000468534 ZNF843Q8N446 348 aa3.74□□□□□ -1.81
CCDC88A-210ENST00000468534 TCTEX1D1Q8N7M0 179 aa3.74□□□□□ -1.81
CCDC88A-210ENST00000468534 TMEM229BQ8NBD8 167 aa3.74□□□□□ -1.81
CCDC88A-210ENST00000468534 ZNRF1Q8ND25 227 aa3.74□□□□□ -1.81
CCDC88A-210ENST00000468534 CT55Q8WUE5 264 aa3.74□□□□□ -1.81
CCDC88A-210ENST00000468534 MALSU1Q96EH3 234 aa3.74□□□□□ -1.81
CCDC88A-210ENST00000468534 METTL26Q96S19 204 aa3.74□□□□□ -1.81
CCDC88A-210ENST00000468534 PSMG3Q9BT73 122 aaPredicted RBP3.74□□□□□ -1.81
CCDC88A-210ENST00000468534 PBOV1Q9GZY1 135 aa3.74□□□□□ -1.81
CCDC88A-210ENST00000468534 HES4Q9HCC6 221 aa3.74□□□□□ -1.81
CCDC88A-210ENST00000468534 TMEM100Q9NV29 134 aa3.74□□□□□ -1.81
CCDC88A-210ENST00000468534 CALYQ9NYX4 217 aa3.74□□□□□ -1.81
CCDC88A-210ENST00000468534 KLK11Q9UBX7 282 aa3.74□□□□□ -1.81
CCDC88A-210ENST00000468534 VSIG4Q9Y279 399 aa3.74□□□□□ -1.81
CCDC88A-210ENST00000468534 ZCCHC11Q5TAX3 1644 aaKnown RBP3.73□□□□□ -1.81
CCDC88A-210ENST00000468534 CCDC18Q5T9S5 1454 aa3.73□□□□□ -1.81
CCDC88A-210ENST00000468534 DNMBPQ6XZF7 1577 aa3.73□□□□□ -1.81
CCDC88A-210ENST00000468534 LOC102725191A0A1B0GVB3 256 aa3.73□□□□□ -1.81
CCDC88A-210ENST00000468534 A0A1B0GW64 132 aa3.73□□□□□ -1.81
CCDC88A-210ENST00000468534 C5orf63A6NC05 138 aa3.73□□□□□ -1.81
CCDC88A-210ENST00000468534 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP3.73□□□□□ -1.81
CCDC88A-210ENST00000468534 K7ENP7 123 aa3.73□□□□□ -1.81
CCDC88A-210ENST00000468534 AIPO00170 330 aa3.73□□□□□ -1.81
CCDC88A-210ENST00000468534 UPK1AO00322 258 aa3.73□□□□□ -1.81
CCDC88A-210ENST00000468534 ZNF682O95780 498 aa3.73□□□□□ -1.81
CCDC88A-210ENST00000468534 OR2H2O95918 312 aa3.73□□□□□ -1.81
CCDC88A-210ENST00000468534 IGHV3-9P01782 118 aa3.73□□□□□ -1.81
CCDC88A-210ENST00000468534 FABP3P05413 133 aa3.73□□□□□ -1.81
CCDC88A-210ENST00000468534 FCGR3AP08637 254 aa3.73□□□□□ -1.81
CCDC88A-210ENST00000468534 MYL9P24844 172 aa3.73□□□□□ -1.81
CCDC88A-210ENST00000468534 FCGR2CP31995 323 aa3.73□□□□□ -1.81
CCDC88A-210ENST00000468534 CRYBA2P53672 197 aa3.73□□□□□ -1.81
CCDC88A-210ENST00000468534 RPS24P62847 133 aaKnown RBP3.73□□□□□ -1.81
CCDC88A-210ENST00000468534 RHEBQ15382 184 aa3.73□□□□□ -1.81
CCDC88A-210ENST00000468534 SCGB2B2Q4G0G5 96 aa3.73□□□□□ -1.81
CCDC88A-210ENST00000468534 NHLRC3Q5JS37 347 aa3.73□□□□□ -1.81
CCDC88A-210ENST00000468534 GLYATL3Q5SZD4 288 aa3.73□□□□□ -1.81
CCDC88A-210ENST00000468534 FAM219BQ5XKK7 198 aa3.73□□□□□ -1.81
CCDC88A-210ENST00000468534 CNIH2Q6PI25 160 aa3.73□□□□□ -1.81
CCDC88A-210ENST00000468534 TMEM179BQ7Z7N9 219 aa3.73□□□□□ -1.81
CCDC88A-210ENST00000468534 PPP1R27Q86WC6 154 aa3.73□□□□□ -1.81
CCDC88A-210ENST00000468534 EXOC3-AS1Q8N2X6 119 aa3.73□□□□□ -1.81
CCDC88A-210ENST00000468534 C11orf42Q8N5U0 333 aa3.73□□□□□ -1.81
CCDC88A-210ENST00000468534 OR2G3Q8NGZ4 309 aa3.73□□□□□ -1.81
CCDC88A-210ENST00000468534 OR8S1Q8NH09 359 aa3.73□□□□□ -1.81
CCDC88A-210ENST00000468534 GPR146Q96CH1 333 aa3.73□□□□□ -1.81
CCDC88A-210ENST00000468534 ST6GAL2Q96JF0 529 aa3.73□□□□□ -1.81
CCDC88A-210ENST00000468534 C9orf85Q96MD7 179 aa3.73□□□□□ -1.81
CCDC88A-210ENST00000468534 FAM218AQ96MZ4 157 aa3.73□□□□□ -1.81
CCDC88A-210ENST00000468534 OR2M4Q96R27 311 aa3.73□□□□□ -1.81
CCDC88A-210ENST00000468534 TRIB3Q96RU7 358 aa3.73□□□□□ -1.81
CCDC88A-210ENST00000468534 OR8D2Q9GZM6 311 aa3.73□□□□□ -1.81
CCDC88A-210ENST00000468534 UBQLN4Q9NRR5 601 aa3.73□□□□□ -1.81
CCDC88A-210ENST00000468534 SCN3BQ9NY72 215 aa3.73□□□□□ -1.81
CCDC88A-210ENST00000468534 SLC23A2Q9UGH3 650 aa3.73□□□□□ -1.81
CCDC88A-210ENST00000468534 PCYOX1Q9UHG3 505 aa3.73□□□□□ -1.81
CCDC88A-210ENST00000468534 SNX12Q9UMY4 172 aa3.73□□□□□ -1.81
CCDC88A-210ENST00000468534 CACNA1SQ13698 1873 aa3.73□□□□□ -1.81
CCDC88A-210ENST00000468534 PTPRKQ15262 1439 aa3.72□□□□□ -1.81
CCDC88A-210ENST00000468534 PDS5BQ9NTI5 1447 aa3.72□□□□□ -1.81
CCDC88A-210ENST00000468534 TRAV39A0A0B4J263 110 aa3.72□□□□□ -1.81
CCDC88A-210ENST00000468534 IGHV3OR16-9A0A0B4J2B5 98 aa3.72□□□□□ -1.81
CCDC88A-210ENST00000468534 IGKV1D-13A0A0B4J2D9 117 aa3.72□□□□□ -1.81
CCDC88A-210ENST00000468534 TRBV5-4A0A0C4DH59 114 aa3.72□□□□□ -1.81
CCDC88A-210ENST00000468534 PLAC8L1A1L4L8 177 aa3.72□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 50.7 ms