RNA–Protein interactions for RNA: ENST00000466159.6

SYNE1-217, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 2,610 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-217ENST00000466159 MSL2Q9HCI7 577 aa7.53□□□□□ -1.2
SYNE1-217ENST00000466159 KCNJ16Q9NPI9 418 aa7.53□□□□□ -1.2
SYNE1-217ENST00000466159 CACNA1GO43497 2377 aa7.53□□□□□ -1.2
SYNE1-217ENST00000466159 CHD3Q12873 2000 aaKnown RBP7.53□□□□□ -1.2
SYNE1-217ENST00000466159 TRAV17A0A0B4J275 112 aa7.52□□□□□ -1.21
SYNE1-217ENST00000466159 C12orf77C9JDV5 145 aa7.52□□□□□ -1.21
SYNE1-217ENST00000466159 SYNGR2O43760 224 aa7.52□□□□□ -1.21
SYNE1-217ENST00000466159 CECR9P0C854 216 aa7.52□□□□□ -1.21
SYNE1-217ENST00000466159 SULT1A1P50225 295 aa7.52□□□□□ -1.21
SYNE1-217ENST00000466159 DEFB109BQ30KR1 87 aa7.52□□□□□ -1.21
SYNE1-217ENST00000466159 THNSL2Q86YJ6 484 aa7.52□□□□□ -1.21
SYNE1-217ENST00000466159 RBFOX3A6NFN3 312 aa7.52□□□□□ -1.21
SYNE1-217ENST00000466159 C1QTNF9BB2RNN3 333 aa7.52□□□□□ -1.21
SYNE1-217ENST00000466159 TIMM8AO60220 97 aaPredicted RBP7.52□□□□□ -1.21
SYNE1-217ENST00000466159 METTL15P1P0C7V9 234 aa7.52□□□□□ -1.21
SYNE1-217ENST00000466159 TAS2R30P59541 319 aa7.52□□□□□ -1.21
SYNE1-217ENST00000466159 ARL16Q0P5N6 197 aa7.52□□□□□ -1.21
SYNE1-217ENST00000466159 HAGHQ16775 308 aa7.52□□□□□ -1.21
SYNE1-217ENST00000466159 AKR1C8PQ5T2L2 129 aa7.52□□□□□ -1.21
SYNE1-217ENST00000466159 FIP1L1Q6UN15 594 aaKnown RBP7.52□□□□□ -1.21
SYNE1-217ENST00000466159 TPRX1Q8N7U7 411 aa7.52□□□□□ -1.21
SYNE1-217ENST00000466159 ZNF610Q8N9Z0 462 aa7.52□□□□□ -1.21
SYNE1-217ENST00000466159 OR52L2PQ8NGH6 319 aa7.52□□□□□ -1.21
SYNE1-217ENST00000466159 SFT2D1Q8WV19 159 aa7.52□□□□□ -1.21
SYNE1-217ENST00000466159 SARAFQ96BY9 339 aa7.52□□□□□ -1.21
SYNE1-217ENST00000466159 OPN3Q9H1Y3 402 aaPredicted RBP7.52□□□□□ -1.21
SYNE1-217ENST00000466159 LIN7CQ9NUP9 197 aaKnown RBP7.52□□□□□ -1.21
SYNE1-217ENST00000466159 PSENENQ9NZ42 101 aa7.52□□□□□ -1.21
SYNE1-217ENST00000466159 KCNIP1Q9NZI2 227 aa7.52□□□□□ -1.21
SYNE1-217ENST00000466159 METRNQ9UJH8 293 aa7.52□□□□□ -1.21
SYNE1-217ENST00000466159 WSB1Q9Y6I7 421 aa7.52□□□□□ -1.21
SYNE1-217ENST00000466159 DOCK11Q5JSL3 2073 aa7.51□□□□□ -1.21
SYNE1-217ENST00000466159 A0A1B0GW64 132 aa7.51□□□□□ -1.21
SYNE1-217ENST00000466159 TMEM30CPA0ZSE6 113 aa7.51□□□□□ -1.21
SYNE1-217ENST00000466159 PRR33A8MZF0 331 aa7.51□□□□□ -1.21
SYNE1-217ENST00000466159 RAMP3O60896 148 aa7.51□□□□□ -1.21
SYNE1-217ENST00000466159 PTBP3O95758 552 aaKnown RBP7.51□□□□□ -1.21
SYNE1-217ENST00000466159 CEACAM1P13688 526 aa7.51□□□□□ -1.21
SYNE1-217ENST00000466159 OR2B11Q5JQS5 317 aa7.51□□□□□ -1.21
SYNE1-217ENST00000466159 SP5Q6BEB4 398 aaPredicted RBP7.51□□□□□ -1.21
SYNE1-217ENST00000466159 SLC25A24Q6NUK1 477 aa7.51□□□□□ -1.21
SYNE1-217ENST00000466159 WDR82Q6UXN9 313 aa7.51□□□□□ -1.21
SYNE1-217ENST00000466159 ACP7Q6ZNF0 438 aa7.51□□□□□ -1.21
SYNE1-217ENST00000466159 FGFRL1Q8N441 504 aa7.51□□□□□ -1.21
SYNE1-217ENST00000466159 C15orf54Q8N8G6 183 aa7.51□□□□□ -1.21
SYNE1-217ENST00000466159 GALMQ96C23 342 aa7.51□□□□□ -1.21
SYNE1-217ENST00000466159 C5orf30Q96GV9 206 aa7.51□□□□□ -1.21
SYNE1-217ENST00000466159 COQ2Q96H96 371 aa7.51□□□□□ -1.21
SYNE1-217ENST00000466159 TAAR6Q96RI8 345 aa7.51□□□□□ -1.21
SYNE1-217ENST00000466159 RSG1Q9BU20 258 aa7.51□□□□□ -1.21
SYNE1-217ENST00000466159 OR2D2Q9H210 308 aa7.51□□□□□ -1.21
SYNE1-217ENST00000466159 CXXC4Q9H2H0 198 aa7.51□□□□□ -1.21
SYNE1-217ENST00000466159 DKK4Q9UBT3 224 aa7.51□□□□□ -1.21
SYNE1-217ENST00000466159 CADP27708 2225 aa7.51□□□□□ -1.21
SYNE1-217ENST00000466159 PIGBOS1A0A0B4J2F0 54 aa7.51□□□□□ -1.21
SYNE1-217ENST00000466159 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP7.51□□□□□ -1.21
SYNE1-217ENST00000466159 GALR2O43603 387 aaPredicted RBP7.51□□□□□ -1.21
SYNE1-217ENST00000466159 DFFBO76075 338 aa7.51□□□□□ -1.21
SYNE1-217ENST00000466159 HBZP02008 142 aa7.51□□□□□ -1.21
SYNE1-217ENST00000466159 ARG1P05089 322 aa7.51□□□□□ -1.21
SYNE1-217ENST00000466159 ACAA1P09110 424 aaPredicted RBP7.51□□□□□ -1.21
SYNE1-217ENST00000466159 FBP1P09467 338 aa7.51□□□□□ -1.21
SYNE1-217ENST00000466159 IL2RGP31785 369 aa7.51□□□□□ -1.21
SYNE1-217ENST00000466159 GABRA2P47869 451 aa7.51□□□□□ -1.21
SYNE1-217ENST00000466159 RPL30P62888 115 aaKnown RBP7.51□□□□□ -1.21
SYNE1-217ENST00000466159 ACSF3Q4G176 576 aaPredicted RBP7.51□□□□□ -1.21
SYNE1-217ENST00000466159 SOHLH1Q5JUK2 328 aa7.51□□□□□ -1.21
SYNE1-217ENST00000466159 HAPLN4Q86UW8 402 aa7.51□□□□□ -1.21
SYNE1-217ENST00000466159 ZNF808Q8N4W9 903 aaPredicted RBP7.51□□□□□ -1.21
SYNE1-217ENST00000466159 MRGPRDQ8TDS7 321 aa7.51□□□□□ -1.21
SYNE1-217ENST00000466159 HIST1H2BAQ96A08 127 aa7.51□□□□□ -1.21
SYNE1-217ENST00000466159 PLSCR4Q9NRQ2 329 aa7.51□□□□□ -1.21
SYNE1-217ENST00000466159 PUS1Q9Y606 427 aaKnown RBP eCLIP7.51□□□□□ -1.21
SYNE1-217ENST00000466159 IGHV1-18A0A0C4DH31 117 aa7.5□□□□□ -1.21
SYNE1-217ENST00000466159 A0A1W2PPH5 198 aa7.5□□□□□ -1.21
SYNE1-217ENST00000466159 TNFSF13O75888 250 aa7.5□□□□□ -1.21
SYNE1-217ENST00000466159 IFNA5P01569 189 aa7.5□□□□□ -1.21
SYNE1-217ENST00000466159 RPL35P42766 123 aaKnown RBP7.5□□□□□ -1.21
SYNE1-217ENST00000466159 HOXA1P49639 335 aaPredicted RBP7.5□□□□□ -1.21
SYNE1-217ENST00000466159 AKR1D1P51857 326 aa7.5□□□□□ -1.21
SYNE1-217ENST00000466159 CEBPGP53567 150 aa7.5□□□□□ -1.21
SYNE1-217ENST00000466159 SLC35E4Q6ICL7 350 aa7.5□□□□□ -1.21
SYNE1-217ENST00000466159 ALKBH2Q6NS38 261 aa7.5□□□□□ -1.21
SYNE1-217ENST00000466159 LURAP1LQ8IV03 231 aa7.5□□□□□ -1.21
SYNE1-217ENST00000466159 ZNF645Q8N7E2 425 aa7.5□□□□□ -1.21
SYNE1-217ENST00000466159 C1orf162Q8NEQ5 155 aaPredicted RBP7.5□□□□□ -1.21
SYNE1-217ENST00000466159 KIAA1456Q9P272 454 aa7.5□□□□□ -1.21
SYNE1-217ENST00000466159 MGAQ8IWI9 3026 aa7.5□□□□□ -1.21
SYNE1-217ENST00000466159 IGHV2OR16-5A0A0B4J2B6 119 aa7.5□□□□□ -1.21
SYNE1-217ENST00000466159 OOEPA6NGQ2 149 aa7.5□□□□□ -1.21
SYNE1-217ENST00000466159 KRASP01116 189 aa7.5□□□□□ -1.21
SYNE1-217ENST00000466159 PAX6P26367 422 aa7.5□□□□□ -1.21
SYNE1-217ENST00000466159 SSTR5P35346 364 aa7.5□□□□□ -1.21
SYNE1-217ENST00000466159 G6PCP35575 357 aa7.5□□□□□ -1.21
SYNE1-217ENST00000466159 CD200P41217 278 aa7.5□□□□□ -1.21
SYNE1-217ENST00000466159 GLIPR1P48060 266 aa7.5□□□□□ -1.21
SYNE1-217ENST00000466159 LINC00205P59089 165 aa7.5□□□□□ -1.21
SYNE1-217ENST00000466159 COL10A1Q03692 680 aa7.5□□□□□ -1.21
SYNE1-217ENST00000466159 ZNF816Q0VGE8 651 aaPredicted RBP7.5□□□□□ -1.21
SYNE1-217ENST00000466159 HABP2Q14520 560 aaPredicted RBP7.5□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 117.9 ms