RNA–Protein interactions for RNA: ENST00000460593.1

CPSF3-202, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 1 (best) BASIC

Gene CPSF3, Length 3,157 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-202ENST00000460593 CACNA1DQ01668 2161 aa9.97□□□□□ -0.81
CPSF3-202ENST00000460593 TP53I11O14683 189 aa9.97□□□□□ -0.81
CPSF3-202ENST00000460593 PSMB3P49720 205 aa9.97□□□□□ -0.81
CPSF3-202ENST00000460593 THBS3P49746 956 aa9.97□□□□□ -0.81
CPSF3-202ENST00000460593 ZXDAP98168 799 aa9.97□□□□□ -0.81
CPSF3-202ENST00000460593 RAET1LQ5VY80 246 aa9.97□□□□□ -0.81
CPSF3-202ENST00000460593 ZCCHC14Q8WYQ9 949 aaKnown RBP9.97□□□□□ -0.81
CPSF3-202ENST00000460593 FAM103A1Q9BTL3 118 aaKnown RBP9.97□□□□□ -0.81
CPSF3-202ENST00000460593 OR2J1Q9GZK6 312 aa9.97□□□□□ -0.81
CPSF3-202ENST00000460593 GPR27Q9NS67 375 aa9.97□□□□□ -0.81
CPSF3-202ENST00000460593 CD300LBA8K4G0 201 aa9.96□□□□□ -0.81
CPSF3-202ENST00000460593 NAPSAO96009 420 aa9.96□□□□□ -0.81
CPSF3-202ENST00000460593 IGKV1-5P01602 117 aa9.96□□□□□ -0.81
CPSF3-202ENST00000460593 CRYGSP22914 178 aa9.96□□□□□ -0.81
CPSF3-202ENST00000460593 SUMO3P55854 103 aaPredicted RBP9.96□□□□□ -0.81
CPSF3-202ENST00000460593 TFF3Q07654 80 aa9.96□□□□□ -0.81
CPSF3-202ENST00000460593 GCSAMLQ5JQS6 135 aa9.96□□□□□ -0.81
CPSF3-202ENST00000460593 C11orf42Q8N5U0 333 aa9.96□□□□□ -0.81
CPSF3-202ENST00000460593 TAF15Q92804 592 aaKnown RBP eCLIP9.96□□□□□ -0.81
CPSF3-202ENST00000460593 HSPB9Q9BQS6 159 aa9.96□□□□□ -0.81
CPSF3-202ENST00000460593 AKIRIN1Q9H9L7 192 aaPredicted RBP9.96□□□□□ -0.81
CPSF3-202ENST00000460593 CLEC18AA5D8T8 446 aa9.96□□□□□ -0.82
CPSF3-202ENST00000460593 TNFSF11O14788 317 aa9.96□□□□□ -0.82
CPSF3-202ENST00000460593 GGCTO75223 188 aaKnown RBP9.96□□□□□ -0.82
CPSF3-202ENST00000460593 GPM6AP51674 278 aa9.96□□□□□ -0.82
CPSF3-202ENST00000460593 RPL15P61313 204 aaKnown RBP9.96□□□□□ -0.82
CPSF3-202ENST00000460593 ACOT6Q3I5F7 207 aaPredicted RBP9.96□□□□□ -0.82
CPSF3-202ENST00000460593 C9orf135Q5VTT2 229 aa9.96□□□□□ -0.82
CPSF3-202ENST00000460593 CLEC18CQ8NCF0 446 aa9.96□□□□□ -0.82
CPSF3-202ENST00000460593 ADPRHL1Q8NDY3 354 aa9.96□□□□□ -0.82
CPSF3-202ENST00000460593 OR5D13Q8NGL4 314 aa9.96□□□□□ -0.82
CPSF3-202ENST00000460593 FGF23Q9GZV9 251 aaPredicted RBP9.96□□□□□ -0.82
CPSF3-202ENST00000460593 DNAJC4Q9NNZ3 241 aa9.96□□□□□ -0.82
CPSF3-202ENST00000460593 TP53TG3Q9ULZ0 132 aa9.96□□□□□ -0.82
CPSF3-202ENST00000460593 DMDP11532 3685 aa9.96□□□□□ -0.82
CPSF3-202ENST00000460593 TRAV34A0A0B4J273 112 aa9.96□□□□□ -0.82
CPSF3-202ENST00000460593 C5orf67F2Z3F1 127 aa9.96□□□□□ -0.82
CPSF3-202ENST00000460593 SYNGR3O43761 229 aa9.96□□□□□ -0.82
CPSF3-202ENST00000460593 CLDN1O95832 211 aa9.96□□□□□ -0.82
CPSF3-202ENST00000460593 CBLN1P23435 193 aa9.96□□□□□ -0.82
CPSF3-202ENST00000460593 SLC38A11Q08AI6 406 aa9.96□□□□□ -0.82
CPSF3-202ENST00000460593 MMDQ15546 238 aa9.96□□□□□ -0.82
CPSF3-202ENST00000460593 OR1F12Q8NHA8 337 aa9.96□□□□□ -0.82
CPSF3-202ENST00000460593 CMTM2Q8TAZ6 248 aa9.96□□□□□ -0.82
CPSF3-202ENST00000460593 FOXJ2Q9P0K8 574 aa9.96□□□□□ -0.82
CPSF3-202ENST00000460593 EXPH5Q8NEV8 1989 aa9.95□□□□□ -0.82
CPSF3-202ENST00000460593 IGHV3-64DA0A0J9YX35 117 aa9.95□□□□□ -0.82
CPSF3-202ENST00000460593 LILRA5A6NI73 299 aa9.95□□□□□ -0.82
CPSF3-202ENST00000460593 H0Y980 276 aa9.95□□□□□ -0.82
CPSF3-202ENST00000460593 ATP5G3P48201 142 aa9.95□□□□□ -0.82
CPSF3-202ENST00000460593 LINC00310P59036 64 aa9.95□□□□□ -0.82
CPSF3-202ENST00000460593 FAM53AQ6NSI3 398 aaPredicted RBP9.95□□□□□ -0.82
CPSF3-202ENST00000460593 ASCL4Q6XD76 172 aa9.95□□□□□ -0.82
CPSF3-202ENST00000460593 ZIC4Q8N9L1 334 aa9.95□□□□□ -0.82
CPSF3-202ENST00000460593 CRISPLD2Q9H0B8 497 aa9.95□□□□□ -0.82
CPSF3-202ENST00000460593 CD207Q9UJ71 328 aa9.95□□□□□ -0.82
CPSF3-202ENST00000460593 FREM1Q5H8C1 2179 aa9.95□□□□□ -0.82
CPSF3-202ENST00000460593 USF3Q68DE3 2245 aa9.95□□□□□ -0.82
CPSF3-202ENST00000460593 A0A1W2PPC4 97 aa9.95□□□□□ -0.82
CPSF3-202ENST00000460593 EPOPA6NHQ4 379 aa9.95□□□□□ -0.82
CPSF3-202ENST00000460593 PSG4Q00888 419 aa9.95□□□□□ -0.82
CPSF3-202ENST00000460593 CISD2Q8N5K1 135 aaKnown RBP9.95□□□□□ -0.82
CPSF3-202ENST00000460593 SGMS2Q8NHU3 365 aa9.95□□□□□ -0.82
CPSF3-202ENST00000460593 RNASE8Q8TDE3 154 aaKnown RBP9.95□□□□□ -0.82
CPSF3-202ENST00000460593 TMEM54Q969K7 222 aa9.95□□□□□ -0.82
CPSF3-202ENST00000460593 RAB40CQ96S21 281 aa9.95□□□□□ -0.82
CPSF3-202ENST00000460593 PLSCR2Q9NRY7 297 aa9.95□□□□□ -0.82
CPSF3-202ENST00000460593 KCNS2Q9ULS6 477 aa9.95□□□□□ -0.82
CPSF3-202ENST00000460593 PTRH2Q9Y3E5 179 aaKnown RBP9.95□□□□□ -0.82
CPSF3-202ENST00000460593 SERF1AO75920 110 aa9.94□□□□□ -0.82
CPSF3-202ENST00000460593 HNRNPKP61978 463 aaKnown RBP eCLIP9.94□□□□□ -0.82
CPSF3-202ENST00000460593 HIST1H3AP68431 136 aa9.94□□□□□ -0.82
CPSF3-202ENST00000460593 RPP30P78346 268 aaKnown RBP9.94□□□□□ -0.82
CPSF3-202ENST00000460593 OR10G9Q8NGN4 311 aa9.94□□□□□ -0.82
CPSF3-202ENST00000460593 OR10G7Q8NGN6 311 aa9.94□□□□□ -0.82
CPSF3-202ENST00000460593 SRXN1Q9BYN0 137 aa9.94□□□□□ -0.82
CPSF3-202ENST00000460593 HIPK2Q9H2X6 1198 aa9.94□□□□□ -0.82
CPSF3-202ENST00000460593 GPR35Q9HC97 309 aa9.94□□□□□ -0.82
CPSF3-202ENST00000460593 TMEM106BQ9NUM4 274 aa9.94□□□□□ -0.82
CPSF3-202ENST00000460593 RBM7Q9Y580 266 aaKnown RBP9.94□□□□□ -0.82
CPSF3-202ENST00000460593 RBFOX2O43251 390 aaKnown RBP eCLIP9.94□□□□□ -0.82
CPSF3-202ENST00000460593 WDR1O75083 606 aa9.94□□□□□ -0.82
CPSF3-202ENST00000460593 NDUFB4O95168 129 aa9.94□□□□□ -0.82
CPSF3-202ENST00000460593 DRD1P21728 446 aa9.94□□□□□ -0.82
CPSF3-202ENST00000460593 FUT6P51993 359 aa9.94□□□□□ -0.82
CPSF3-202ENST00000460593 CARD18P57730 90 aa9.94□□□□□ -0.82
CPSF3-202ENST00000460593 TGFBR3Q03167 851 aa9.94□□□□□ -0.82
CPSF3-202ENST00000460593 FFAR4Q5NUL3 377 aa9.94□□□□□ -0.82
CPSF3-202ENST00000460593 C10orf128Q5T292 105 aa9.94□□□□□ -0.82
CPSF3-202ENST00000460593 TPTE2P1Q5T6R2 138 aa9.94□□□□□ -0.82
CPSF3-202ENST00000460593 PCSK4Q6UW60 755 aa9.94□□□□□ -0.82
CPSF3-202ENST00000460593 MIEN1Q9BRT3 115 aa9.94□□□□□ -0.82
CPSF3-202ENST00000460593 AGMATQ9BSE5 352 aa9.94□□□□□ -0.82
CPSF3-202ENST00000460593 CLN8Q9UBY8 286 aa9.94□□□□□ -0.82
CPSF3-202ENST00000460593 hCG_38984A0A1B0GV85 526 aa9.93□□□□□ -0.82
CPSF3-202ENST00000460593 C11orf94C9JXX5 98 aa9.93□□□□□ -0.82
CPSF3-202ENST00000460593 SYNGR1O43759 233 aa9.93□□□□□ -0.82
CPSF3-202ENST00000460593 SPINK4O60575 86 aa9.93□□□□□ -0.82
CPSF3-202ENST00000460593 TUSC2O75896 110 aa9.93□□□□□ -0.82
CPSF3-202ENST00000460593 IL6RP08887 468 aaPredicted RBP9.93□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 47.6 ms