RNA–Protein interactions for RNA: ENST00000459756.5

COL7A1-203, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 818 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-203ENST00000459756 CD36P16671 472 aa12.78□□□□□ -0.36
COL7A1-203ENST00000459756 PPP1CCP36873 323 aaKnown RBP12.78□□□□□ -0.36
COL7A1-203ENST00000459756 GNMTQ14749 295 aa12.78□□□□□ -0.36
COL7A1-203ENST00000459756 PDLIM3Q53GG5 364 aaPredicted RBP12.78□□□□□ -0.36
COL7A1-203ENST00000459756 TCTEX1D4Q5JR98 221 aa12.78□□□□□ -0.36
COL7A1-203ENST00000459756 ZNF880Q6PDB4 577 aa12.78□□□□□ -0.36
COL7A1-203ENST00000459756 CD200R1LQ6Q8B3 271 aa12.78□□□□□ -0.36
COL7A1-203ENST00000459756 MOB1BQ7L9L4 216 aa12.78□□□□□ -0.36
COL7A1-203ENST00000459756 OR51D1Q8NGF3 324 aa12.78□□□□□ -0.36
COL7A1-203ENST00000459756 OR8H1Q8NGG4 311 aa12.78□□□□□ -0.36
COL7A1-203ENST00000459756 YPEL2Q96QA6 119 aa12.78□□□□□ -0.36
COL7A1-203ENST00000459756 OR51E2Q9H255 320 aa12.78□□□□□ -0.36
COL7A1-203ENST00000459756 STUB1Q9UNE7 303 aa12.78□□□□□ -0.36
COL7A1-203ENST00000459756 TSSC4Q9Y5U2 329 aaPredicted RBP12.78□□□□□ -0.36
COL7A1-203ENST00000459756 TRBV6-6A0A0A6YYG2 114 aa12.77□□□□□ -0.37
COL7A1-203ENST00000459756 LOC100506127A0A0U1RQW1 187 aa12.77□□□□□ -0.37
COL7A1-203ENST00000459756 TRDV1A0A1B0GX56 115 aa12.77□□□□□ -0.37
COL7A1-203ENST00000459756 SMIM30A4D0T7 59 aa12.77□□□□□ -0.37
COL7A1-203ENST00000459756 NCBP2LA6PVI3 153 aaKnown RBP12.77□□□□□ -0.37
COL7A1-203ENST00000459756 GALP22466 123 aa12.77□□□□□ -0.37
COL7A1-203ENST00000459756 MYL9P24844 172 aa12.77□□□□□ -0.37
COL7A1-203ENST00000459756 CLDN12P56749 244 aa12.77□□□□□ -0.37
COL7A1-203ENST00000459756 C2orf76Q3KRA6 126 aa12.77□□□□□ -0.37
COL7A1-203ENST00000459756 CHCHD6Q9BRQ6 235 aa12.77□□□□□ -0.37
COL7A1-203ENST00000459756 LIN7CQ9NUP9 197 aaKnown RBP12.77□□□□□ -0.37
COL7A1-203ENST00000459756 STEAP1Q9UHE8 339 aa12.77□□□□□ -0.37
COL7A1-203ENST00000459756 AK3Q9UIJ7 227 aa12.77□□□□□ -0.37
COL7A1-203ENST00000459756 PLXNB1O43157 2135 aa12.76□□□□□ -0.37
COL7A1-203ENST00000459756 A0A1W2PRX2 142 aa12.76□□□□□ -0.37
COL7A1-203ENST00000459756 PSMB11A5LHX3 300 aa12.76□□□□□ -0.37
COL7A1-203ENST00000459756 FOXI3A8MTJ6 420 aaPredicted RBP12.76□□□□□ -0.37
COL7A1-203ENST00000459756 SERPINE3A8MV23 424 aa12.76□□□□□ -0.37
COL7A1-203ENST00000459756 ZNF736B4DX44 427 aaPredicted RBP12.76□□□□□ -0.37
COL7A1-203ENST00000459756 LDLRAD4O15165 306 aa12.76□□□□□ -0.37
COL7A1-203ENST00000459756 IGHG2P01859 326 aa12.76□□□□□ -0.37
COL7A1-203ENST00000459756 SMIM18P0DKX4 95 aa12.76□□□□□ -0.37
COL7A1-203ENST00000459756 GADD45AP24522 165 aa12.76□□□□□ -0.37
COL7A1-203ENST00000459756 Q6ZPA2 131 aa12.76□□□□□ -0.37
COL7A1-203ENST00000459756 C5orf24Q7Z6I8 188 aa12.76□□□□□ -0.37
COL7A1-203ENST00000459756 SLC35E3Q7Z769 313 aa12.76□□□□□ -0.37
COL7A1-203ENST00000459756 FOXRED2Q8IWF2 684 aa12.76□□□□□ -0.37
COL7A1-203ENST00000459756 OR2AK2Q8NG84 335 aa12.76□□□□□ -0.37
COL7A1-203ENST00000459756 OR56B1Q8NGI3 324 aa12.76□□□□□ -0.37
COL7A1-203ENST00000459756 SETD6Q8TBK2 473 aa12.76□□□□□ -0.37
COL7A1-203ENST00000459756 CHPT1Q8WUD6 406 aa12.76□□□□□ -0.37
COL7A1-203ENST00000459756 IL1F10Q8WWZ1 152 aa12.76□□□□□ -0.37
COL7A1-203ENST00000459756 C12orf4Q9NQ89 552 aa12.76□□□□□ -0.37
COL7A1-203ENST00000459756 PLSCR3Q9NRY6 295 aa12.76□□□□□ -0.37
COL7A1-203ENST00000459756 TXNL4BQ9NX01 149 aaKnown RBP12.76□□□□□ -0.37
COL7A1-203ENST00000459756 MGAT4AQ9UM21 535 aa12.76□□□□□ -0.37
COL7A1-203ENST00000459756 SSR3Q9UNL2 185 aa12.76□□□□□ -0.37
COL7A1-203ENST00000459756 VEGFCP49767 419 aa12.75□□□□□ -0.37
COL7A1-203ENST00000459756 TMEM50BP56557 158 aa12.75□□□□□ -0.37
COL7A1-203ENST00000459756 LSAMPQ13449 338 aa12.75□□□□□ -0.37
COL7A1-203ENST00000459756 HES5Q5TA89 166 aa12.75□□□□□ -0.37
COL7A1-203ENST00000459756 C10orf99Q6UWK7 81 aa12.75□□□□□ -0.37
COL7A1-203ENST00000459756 C1QL4Q86Z23 238 aa12.75□□□□□ -0.37
COL7A1-203ENST00000459756 ODF3L1Q8IXM7 274 aa12.75□□□□□ -0.37
COL7A1-203ENST00000459756 Q8N9W7 124 aa12.75□□□□□ -0.37
COL7A1-203ENST00000459756 ARHGAP5-AS1Q96IT6 56 aa12.75□□□□□ -0.37
COL7A1-203ENST00000459756 S1PR3Q99500 378 aa12.75□□□□□ -0.37
COL7A1-203ENST00000459756 ABCG5Q9H222 651 aa12.75□□□□□ -0.37
COL7A1-203ENST00000459756 RNF167Q9H6Y7 350 aa12.75□□□□□ -0.37
COL7A1-203ENST00000459756 RAB22AQ9UL26 194 aa12.75□□□□□ -0.37
COL7A1-203ENST00000459756 TMEM272A0A1B0GTI8 110 aa12.74□□□□□ -0.37
COL7A1-203ENST00000459756 SHISA3A0PJX4 238 aa12.74□□□□□ -0.37
COL7A1-203ENST00000459756 IFITM5A6NNB3 132 aa12.74□□□□□ -0.37
COL7A1-203ENST00000459756 PF4V1P10720 104 aa12.74□□□□□ -0.37
COL7A1-203ENST00000459756 OR10A3P58181 314 aa12.74□□□□□ -0.37
COL7A1-203ENST00000459756 KHDC1LQ5JSQ8 128 aa12.74□□□□□ -0.37
COL7A1-203ENST00000459756 SAMD5Q5TGI4 173 aa12.74□□□□□ -0.37
COL7A1-203ENST00000459756 ZNF833PQ6ZTB9 187 aa12.74□□□□□ -0.37
COL7A1-203ENST00000459756 COMMD1Q8N668 190 aa12.74□□□□□ -0.37
COL7A1-203ENST00000459756 NOL4LQ96MY1 436 aaPredicted RBP12.74□□□□□ -0.37
COL7A1-203ENST00000459756 RASL11BQ9BPW5 248 aa12.74□□□□□ -0.37
COL7A1-203ENST00000459756 HDHD3Q9BSH5 251 aaPredicted RBP12.74□□□□□ -0.37
COL7A1-203ENST00000459756 PECRQ9BY49 303 aa12.74□□□□□ -0.37
COL7A1-203ENST00000459756 SAA2-SAA4A0A096LPE2 208 aa12.73□□□□□ -0.37
COL7A1-203ENST00000459756 G3V4G9 280 aa12.73□□□□□ -0.37
COL7A1-203ENST00000459756 AP4M1O00189 453 aa12.73□□□□□ -0.37
COL7A1-203ENST00000459756 ITGB1BP1O14713 200 aa12.73□□□□□ -0.37
COL7A1-203ENST00000459756 SAA2P0DJI9 122 aaPredicted RBP12.73□□□□□ -0.37
COL7A1-203ENST00000459756 RAB3BP20337 219 aa12.73□□□□□ -0.37
COL7A1-203ENST00000459756 GPR12P47775 334 aa12.73□□□□□ -0.37
COL7A1-203ENST00000459756 LSM3P62310 102 aaKnown RBP12.73□□□□□ -0.37
COL7A1-203ENST00000459756 SLC35B1P78383 322 aa12.73□□□□□ -0.37
COL7A1-203ENST00000459756 HLA-DRB3P79483 266 aa12.73□□□□□ -0.37
COL7A1-203ENST00000459756 PLAC9Q5JTB6 97 aa12.73□□□□□ -0.37
COL7A1-203ENST00000459756 KPRPQ5T749 579 aaPredicted RBP12.73□□□□□ -0.37
COL7A1-203ENST00000459756 FAM71F2Q6NXP2 309 aa12.73□□□□□ -0.37
COL7A1-203ENST00000459756 ZNF329Q86UD4 541 aa12.73□□□□□ -0.37
COL7A1-203ENST00000459756 STPG2Q8N412 459 aa12.73□□□□□ -0.37
COL7A1-203ENST00000459756 NABP2Q9BQ15 211 aa12.73□□□□□ -0.37
COL7A1-203ENST00000459756 CMSS1Q9BQ75 279 aaKnown RBP12.73□□□□□ -0.37
COL7A1-203ENST00000459756 MRPL20Q9BYC9 149 aaKnown RBP12.73□□□□□ -0.37
COL7A1-203ENST00000459756 MRPS26Q9BYN8 205 aaKnown RBP12.73□□□□□ -0.37
COL7A1-203ENST00000459756 IFI27L2Q9H2X8 130 aa12.73□□□□□ -0.37
COL7A1-203ENST00000459756 GHITMQ9H3K2 345 aa12.73□□□□□ -0.37
COL7A1-203ENST00000459756 Q9N2K0 584 aa12.73□□□□□ -0.37
COL7A1-203ENST00000459756 PIPOXQ9P0Z9 390 aa12.73□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 54 ms