RNA–Protein interactions for RNA: ENST00000431357.1

USP4-205, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 2,141 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-205ENST00000431357 ZNF883P0CG24 379 aa9.59□□□□□ -0.87
USP4-205ENST00000431357 WNT5AP41221 380 aa9.59□□□□□ -0.87
USP4-205ENST00000431357 CDX1P47902 265 aaPredicted RBP9.59□□□□□ -0.87
USP4-205ENST00000431357 RPP30P78346 268 aaKnown RBP9.59□□□□□ -0.87
USP4-205ENST00000431357 TMEM267Q0VDI3 215 aaPredicted RBP9.59□□□□□ -0.87
USP4-205ENST00000431357 ZNF295-AS1Q8N0V1 137 aa9.59□□□□□ -0.87
USP4-205ENST00000431357 ZNF610Q8N9Z0 462 aa9.59□□□□□ -0.87
USP4-205ENST00000431357 PINX1Q96BK5 328 aaKnown RBP9.59□□□□□ -0.87
USP4-205ENST00000431357 S100PBPQ96BU1 408 aa9.59□□□□□ -0.87
USP4-205ENST00000431357 TMEM242Q9NWH2 141 aa9.59□□□□□ -0.87
USP4-205ENST00000431357 CACNG5Q9UF02 275 aa9.59□□□□□ -0.87
USP4-205ENST00000431357 POLDIP2Q9Y2S7 368 aa9.59□□□□□ -0.87
USP4-205ENST00000431357 C19orf67A6NJJ6 358 aa9.58□□□□□ -0.88
USP4-205ENST00000431357 SLC33A1O00400 549 aaPredicted RBP9.58□□□□□ -0.88
USP4-205ENST00000431357 BCL2P10415 239 aa9.58□□□□□ -0.88
USP4-205ENST00000431357 PMS2P11Q13670 270 aa9.58□□□□□ -0.88
USP4-205ENST00000431357 ZNF674Q2M3X9 581 aa9.58□□□□□ -0.88
USP4-205ENST00000431357 LRRC75BQ2VPJ9 315 aa9.58□□□□□ -0.88
USP4-205ENST00000431357 ZNF787Q6DD87 383 aa9.58□□□□□ -0.88
USP4-205ENST00000431357 ZNF497Q6ZNH5 498 aa9.58□□□□□ -0.88
USP4-205ENST00000431357 Q6ZRM9 215 aa9.58□□□□□ -0.88
USP4-205ENST00000431357 NUFIP2Q7Z417 695 aaKnown RBP9.58□□□□□ -0.88
USP4-205ENST00000431357 ZNF525Q8N782 197 aa9.58□□□□□ -0.88
USP4-205ENST00000431357 OR1K1Q8NGR3 316 aa9.58□□□□□ -0.88
USP4-205ENST00000431357 Q8WTZ3 238 aa9.58□□□□□ -0.88
USP4-205ENST00000431357 IL1F10Q8WWZ1 152 aa9.58□□□□□ -0.88
USP4-205ENST00000431357 MISP3Q96FF7 219 aa9.58□□□□□ -0.88
USP4-205ENST00000431357 NOL4LQ96MY1 436 aaPredicted RBP9.58□□□□□ -0.88
USP4-205ENST00000431357 PCSK5Q92824 1860 aa9.58□□□□□ -0.88
USP4-205ENST00000431357 PRSS47A8MTI9 375 aa9.58□□□□□ -0.88
USP4-205ENST00000431357 H3BP45 60 aa9.58□□□□□ -0.88
USP4-205ENST00000431357 ZNHIT1O43257 154 aa9.58□□□□□ -0.88
USP4-205ENST00000431357 IFNA1P01562 189 aa9.58□□□□□ -0.88
USP4-205ENST00000431357 IGKV1-39P01597 117 aa9.58□□□□□ -0.88
USP4-205ENST00000431357 IGLV2-14P01704 120 aa9.58□□□□□ -0.88
USP4-205ENST00000431357 IGKV1D-39P04432 117 aa9.58□□□□□ -0.88
USP4-205ENST00000431357 CA6P23280 308 aa9.58□□□□□ -0.88
USP4-205ENST00000431357 ZXDAP98168 799 aa9.58□□□□□ -0.88
USP4-205ENST00000431357 TESK1Q15569 626 aa9.58□□□□□ -0.88
USP4-205ENST00000431357 PYY3Q5JQD4 70 aa9.58□□□□□ -0.88
USP4-205ENST00000431357 OR2T2Q6IF00 324 aa9.58□□□□□ -0.88
USP4-205ENST00000431357 C17orf78Q8N4C9 275 aa9.58□□□□□ -0.88
USP4-205ENST00000431357 BCL2L2Q92843 193 aaPredicted RBP9.58□□□□□ -0.88
USP4-205ENST00000431357 HES7Q9BYE0 225 aa9.58□□□□□ -0.88
USP4-205ENST00000431357 RPRMQ9NS64 109 aa9.58□□□□□ -0.88
USP4-205ENST00000431357 OR1A1Q9P1Q5 309 aa9.58□□□□□ -0.88
USP4-205ENST00000431357 GNG13Q9P2W3 67 aa9.58□□□□□ -0.88
USP4-205ENST00000431357 TRAPPC2LQ9UL33 140 aa9.58□□□□□ -0.88
USP4-205ENST00000431357 WASF3Q9UPY6 502 aa9.58□□□□□ -0.88
USP4-205ENST00000431357 WIPI2Q9Y4P8 454 aa9.58□□□□□ -0.88
USP4-205ENST00000431357 RBM7Q9Y580 266 aaKnown RBP9.58□□□□□ -0.88
USP4-205ENST00000431357 MMP24Q9Y5R2 645 aa9.58□□□□□ -0.88
USP4-205ENST00000431357 KMT2EQ8IZD2 1858 aa9.58□□□□□ -0.88
USP4-205ENST00000431357 LILRA1O75019 489 aa9.57□□□□□ -0.88
USP4-205ENST00000431357 IGKV1-5P01602 117 aa9.57□□□□□ -0.88
USP4-205ENST00000431357 TNFRSF9Q07011 255 aa9.57□□□□□ -0.88
USP4-205ENST00000431357 TBC1D28Q2M2D7 210 aa9.57□□□□□ -0.88
USP4-205ENST00000431357 P4HA3Q7Z4N8 544 aa9.57□□□□□ -0.88
USP4-205ENST00000431357 MRGPRGQ86SM5 289 aa9.57□□□□□ -0.88
USP4-205ENST00000431357 ZBTB34Q8NCN2 500 aa9.57□□□□□ -0.88
USP4-205ENST00000431357 RHOVQ96L33 236 aa9.57□□□□□ -0.88
USP4-205ENST00000431357 GP6Q9HCN6 339 aa9.57□□□□□ -0.88
USP4-205ENST00000431357 ASCL3Q9NQ33 180 aa9.57□□□□□ -0.88
USP4-205ENST00000431357 TMEM9BQ9NQ34 198 aa9.57□□□□□ -0.88
USP4-205ENST00000431357 MBNL3Q9NUK0 354 aaKnown RBP9.57□□□□□ -0.88
USP4-205ENST00000431357 GAR1Q9NY12 217 aaKnown RBP9.57□□□□□ -0.88
USP4-205ENST00000431357 KLF13Q9Y2Y9 288 aaPredicted RBP9.57□□□□□ -0.88
USP4-205ENST00000431357 COL27A1Q8IZC6 1860 aaPredicted RBP9.57□□□□□ -0.88
USP4-205ENST00000431357 VCANP13611 3396 aa9.57□□□□□ -0.88
USP4-205ENST00000431357 C9orf172C9J069 976 aa9.56□□□□□ -0.88
USP4-205ENST00000431357 KLRC4-KLRK1H3BQV0 150 aa9.56□□□□□ -0.88
USP4-205ENST00000431357 RHBDL1O75783 438 aa9.56□□□□□ -0.88
USP4-205ENST00000431357 CXCL1P09341 107 aa9.56□□□□□ -0.88
USP4-205ENST00000431357 METTL15P1P0C7V9 234 aa9.56□□□□□ -0.88
USP4-205ENST00000431357 GNG10P50151 68 aa9.56□□□□□ -0.88
USP4-205ENST00000431357 RND2P52198 227 aa9.56□□□□□ -0.88
USP4-205ENST00000431357 ERVK11-1P61568 191 aa9.56□□□□□ -0.88
USP4-205ENST00000431357 RAB11AP62491 216 aa9.56□□□□□ -0.88
USP4-205ENST00000431357 MRPL49Q13405 166 aaKnown RBP9.56□□□□□ -0.88
USP4-205ENST00000431357 ZNF585BQ52M93 769 aa9.56□□□□□ -0.88
USP4-205ENST00000431357 TMEM41BQ5BJD5 291 aa9.56□□□□□ -0.88
USP4-205ENST00000431357 DCAF10Q5QP82 559 aa9.56□□□□□ -0.88
USP4-205ENST00000431357 NCMAPQ5T1S8 102 aa9.56□□□□□ -0.88
USP4-205ENST00000431357 FBXW9Q5XUX1 488 aa9.56□□□□□ -0.88
USP4-205ENST00000431357 FAM90A2PQ658T7 463 aa9.56□□□□□ -0.88
USP4-205ENST00000431357 SPNS3Q6ZMD2 512 aa9.56□□□□□ -0.88
USP4-205ENST00000431357 RSG1Q9BU20 258 aa9.56□□□□□ -0.88
USP4-205ENST00000431357 PRSS50Q9UI38 385 aa9.56□□□□□ -0.88
USP4-205ENST00000431357 PPP1R3CQ9UQK1 317 aa9.56□□□□□ -0.88
USP4-205ENST00000431357 TIMM9Q9Y5J7 89 aa9.56□□□□□ -0.88
USP4-205ENST00000431357 ELOA3CA0A087WX78 387 aaPredicted RBP9.56□□□□□ -0.88
USP4-205ENST00000431357 CLDN34H7C241 214 aa9.56□□□□□ -0.88
USP4-205ENST00000431357 SH2D1BO14796 132 aa9.56□□□□□ -0.88
USP4-205ENST00000431357 OR2H2O95918 312 aa9.56□□□□□ -0.88
USP4-205ENST00000431357 IL18BPO95998 194 aa9.56□□□□□ -0.88
USP4-205ENST00000431357 CYB5R3P00387 301 aaPredicted RBP9.56□□□□□ -0.88
USP4-205ENST00000431357 PDGFBP01127 241 aaPredicted RBP9.56□□□□□ -0.88
USP4-205ENST00000431357 SP1P08047 785 aa9.56□□□□□ -0.88
USP4-205ENST00000431357 IAPPP10997 89 aa9.56□□□□□ -0.88
USP4-205ENST00000431357 NDUFA6P56556 154 aa9.56□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms