RNA–Protein interactions for RNA: ENST00000428026.6

PTPRU-204, Transcript of protein tyrosine phosphatase, receptor type U, humanhuman

TSL 1 (best) BASIC

Gene PTPRU, Length 5,550 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRU-204ENST00000428026 TCFL5Q9UL49 500 aa12.61□□□□□ -0.39
PTPRU-204ENST00000428026 PARP14Q460N5 1801 aa12.61□□□□□ -0.39
PTPRU-204ENST00000428026 ZNHIT1O43257 154 aa12.61□□□□□ -0.39
PTPRU-204ENST00000428026 MGPP08493 103 aa12.61□□□□□ -0.39
PTPRU-204ENST00000428026 HERVK_113P61574 105 aa12.61□□□□□ -0.39
PTPRU-204ENST00000428026 EIF4EBP2Q13542 120 aaPredicted RBP12.61□□□□□ -0.39
PTPRU-204ENST00000428026 TEPPQ6URK8 271 aa12.61□□□□□ -0.39
PTPRU-204ENST00000428026 TUSC5Q8IXB3 177 aa12.61□□□□□ -0.39
PTPRU-204ENST00000428026 TMEM252Q8N6L7 170 aa12.61□□□□□ -0.39
PTPRU-204ENST00000428026 ZNF764Q96H86 408 aaPredicted RBP12.61□□□□□ -0.39
PTPRU-204ENST00000428026 WFDC6Q9BQY6 131 aa12.61□□□□□ -0.39
PTPRU-204ENST00000428026 DDA1Q9BW61 102 aa12.61□□□□□ -0.39
PTPRU-204ENST00000428026 CES1P1Q9UKY3 287 aa12.61□□□□□ -0.39
PTPRU-204ENST00000428026 RGPD3A6NKT7 1758 aaPredicted RBP12.61□□□□□ -0.39
PTPRU-204ENST00000428026 A0A1W2PPV9 198 aa12.61□□□□□ -0.39
PTPRU-204ENST00000428026 DLL1O00548 723 aa12.61□□□□□ -0.39
PTPRU-204ENST00000428026 HOXD4P09016 255 aaPredicted RBP12.61□□□□□ -0.39
PTPRU-204ENST00000428026 HIST1H1EP10412 219 aaKnown RBP12.61□□□□□ -0.39
PTPRU-204ENST00000428026 CD1BP29016 333 aa12.61□□□□□ -0.39
PTPRU-204ENST00000428026 SRD5A2P31213 254 aa12.61□□□□□ -0.39
PTPRU-204ENST00000428026 RAB37Q96AX2 223 aa12.61□□□□□ -0.39
PTPRU-204ENST00000428026 TDRD15B5MCY1 1934 aaKnown RBP12.61□□□□□ -0.39
PTPRU-204ENST00000428026 RPL36A-HNRNPH2H7BZ11 118 aa12.61□□□□□ -0.39
PTPRU-204ENST00000428026 AREGP15514 252 aa12.61□□□□□ -0.39
PTPRU-204ENST00000428026 HIST1H1BP16401 226 aaKnown RBP12.61□□□□□ -0.39
PTPRU-204ENST00000428026 OR8I2Q8N0Y5 310 aa12.61□□□□□ -0.39
PTPRU-204ENST00000428026 SLC22A18ASQ8N1D0 253 aa12.61□□□□□ -0.39
PTPRU-204ENST00000428026 ADAMTS17Q8TE56 1095 aa12.61□□□□□ -0.39
PTPRU-204ENST00000428026 CHST5Q9GZS9 411 aa12.61□□□□□ -0.39
PTPRU-204ENST00000428026 PPIHO43447 177 aaKnown RBP12.6□□□□□ -0.39
PTPRU-204ENST00000428026 FCGR3AP08637 254 aa12.6□□□□□ -0.39
PTPRU-204ENST00000428026 FTH1P19P0C7X4 201 aa12.6□□□□□ -0.39
PTPRU-204ENST00000428026 HKR1P10072 659 aa12.6□□□□□ -0.39
PTPRU-204ENST00000428026 NPY1RP25929 384 aa12.6□□□□□ -0.39
PTPRU-204ENST00000428026 ZFP36L2P47974 494 aaKnown RBP12.6□□□□□ -0.39
PTPRU-204ENST00000428026 RAC3P60763 192 aa12.6□□□□□ -0.39
PTPRU-204ENST00000428026 FAM216AQ8WUB2 273 aa12.6□□□□□ -0.39
PTPRU-204ENST00000428026 GCGP01275 180 aa12.6□□□□□ -0.39
PTPRU-204ENST00000428026 AESQ08117 197 aa12.6□□□□□ -0.39
PTPRU-204ENST00000428026 HFEQ30201 348 aa12.6□□□□□ -0.39
PTPRU-204ENST00000428026 FAM222BQ8WU58 562 aa12.6□□□□□ -0.39
PTPRU-204ENST00000428026 SLC25A38Q96DW6 304 aa12.6□□□□□ -0.39
PTPRU-204ENST00000428026 RASL10BQ96S79 203 aa12.6□□□□□ -0.39
PTPRU-204ENST00000428026 ASCL3Q9NQ33 180 aa12.6□□□□□ -0.39
PTPRU-204ENST00000428026 SIPA1L1O43166 1804 aa12.6□□□□□ -0.39
PTPRU-204ENST00000428026 HTN1P15515 57 aa12.6□□□□□ -0.39
PTPRU-204ENST00000428026 PPP1CCP36873 323 aaKnown RBP12.6□□□□□ -0.39
PTPRU-204ENST00000428026 GPHA2Q96T91 129 aa12.6□□□□□ -0.39
PTPRU-204ENST00000428026 OR2H1Q9GZK4 316 aa12.6□□□□□ -0.39
PTPRU-204ENST00000428026 PRRX1P54821 245 aa12.6□□□□□ -0.39
PTPRU-204ENST00000428026 RELBQ01201 579 aa12.6□□□□□ -0.39
PTPRU-204ENST00000428026 NHLRC3Q5JS37 347 aa12.6□□□□□ -0.39
PTPRU-204ENST00000428026 ZNF600Q6ZNG1 722 aa12.6□□□□□ -0.39
PTPRU-204ENST00000428026 DOLPP1Q86YN1 238 aa12.6□□□□□ -0.39
PTPRU-204ENST00000428026 OR1L1Q8NH94 360 aa12.6□□□□□ -0.39
PTPRU-204ENST00000428026 LOXL4Q96JB6 756 aa12.6□□□□□ -0.39
PTPRU-204ENST00000428026 PRSS27Q9BQR3 290 aa12.6□□□□□ -0.39
PTPRU-204ENST00000428026 GVINP1Q7Z2Y8 2422 aa12.6□□□□□ -0.39
PTPRU-204ENST00000428026 RP1P56715 2156 aa12.6□□□□□ -0.39
PTPRU-204ENST00000428026 FOCADQ5VW36 1801 aa12.6□□□□□ -0.39
PTPRU-204ENST00000428026 PLP1P60201 277 aa12.59□□□□□ -0.39
PTPRU-204ENST00000428026 ADTRPQ96IZ2 230 aa12.59□□□□□ -0.39
PTPRU-204ENST00000428026 SH3BGRL3Q9H299 93 aa12.59□□□□□ -0.39
PTPRU-204ENST00000428026 GNG7O60262 68 aa12.59□□□□□ -0.39
PTPRU-204ENST00000428026 LMX1BO60663 402 aa12.59□□□□□ -0.39
PTPRU-204ENST00000428026 AGFG2O95081 481 aa12.59□□□□□ -0.39
PTPRU-204ENST00000428026 GCSHP23434 173 aa12.59□□□□□ -0.39
PTPRU-204ENST00000428026 P2RY4P51582 365 aa12.59□□□□□ -0.39
PTPRU-204ENST00000428026 DLX1P56177 255 aa12.59□□□□□ -0.39
PTPRU-204ENST00000428026 PRNTQ86SH4 94 aa12.59□□□□□ -0.39
PTPRU-204ENST00000428026 OR2Y1Q8NGV0 311 aa12.59□□□□□ -0.39
PTPRU-204ENST00000428026 AMELYQ99218 206 aa12.59□□□□□ -0.39
PTPRU-204ENST00000428026 PCOLCE2Q9UKZ9 415 aa12.59□□□□□ -0.39
PTPRU-204ENST00000428026 PLXNA1Q9UIW2 1896 aa12.59□□□□□ -0.39
PTPRU-204ENST00000428026 ISXQ2M1V0 245 aa12.59□□□□□ -0.39
PTPRU-204ENST00000428026 MYOZ3Q8TDC0 251 aa12.59□□□□□ -0.39
PTPRU-204ENST00000428026 A0A1W2PQD3 144 aa12.59□□□□□ -0.39
PTPRU-204ENST00000428026 GAPDHP04406 335 aaKnown RBP12.59□□□□□ -0.39
PTPRU-204ENST00000428026 OR4A8P0C604 315 aa12.59□□□□□ -0.39
PTPRU-204ENST00000428026 CXorf66Q5JRM2 361 aaPredicted RBP12.59□□□□□ -0.39
PTPRU-204ENST00000428026 MOGAT3Q86VF5 341 aa12.59□□□□□ -0.39
PTPRU-204ENST00000428026 APOBEC4Q8WW27 367 aaKnown RBP12.59□□□□□ -0.39
PTPRU-204ENST00000428026 SEC16AO15027 2179 aa12.59□□□□□ -0.39
PTPRU-204ENST00000428026 IL11P20809 199 aa12.59□□□□□ -0.39
PTPRU-204ENST00000428026 SRP14P37108 136 aaKnown RBP12.59□□□□□ -0.39
PTPRU-204ENST00000428026 ATOH7Q8N100 152 aa12.59□□□□□ -0.39
PTPRU-204ENST00000428026 PTPMT1Q8WUK0 201 aaPredicted RBP12.59□□□□□ -0.39
PTPRU-204ENST00000428026 HIST1H2BAQ96A08 127 aa12.59□□□□□ -0.39
PTPRU-204ENST00000428026 C10orf35Q96D05 121 aa12.59□□□□□ -0.39
PTPRU-204ENST00000428026 GGACTQ9BVM4 153 aa12.59□□□□□ -0.39
PTPRU-204ENST00000428026 COA4Q9NYJ1 87 aa12.59□□□□□ -0.39
PTPRU-204ENST00000428026 ZFP30Q9Y2G7 519 aa12.59□□□□□ -0.39
PTPRU-204ENST00000428026 H7C2G1 150 aa12.58□□□□□ -0.4
PTPRU-204ENST00000428026 IGKV1D-16P01601 117 aa12.58□□□□□ -0.4
PTPRU-204ENST00000428026 FHITP49789 147 aa12.58□□□□□ -0.4
PTPRU-204ENST00000428026 GGTLC2Q14390 218 aa12.58□□□□□ -0.4
PTPRU-204ENST00000428026 TMEM74BQ9NUR3 256 aa12.58□□□□□ -0.4
PTPRU-204ENST00000428026 IGHV3OR15-7A0A075B7D8 119 aa12.58□□□□□ -0.4
PTPRU-204ENST00000428026 VSTM2AQ8TAG5 236 aa12.58□□□□□ -0.4
PTPRU-204ENST00000428026 PERPQ96FX8 193 aa12.58□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms