RNA–Protein interactions for RNA: ENST00000416400.1

VPS54-204, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS54, Length 1,277 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-204ENST00000416400 A0A0U1RQV1 116 aa2.89□□□□□ -1.95
VPS54-204ENST00000416400 TMEM72A0PK05 275 aa2.89□□□□□ -1.95
VPS54-204ENST00000416400 ARRDC5A6NEK1 342 aa2.89□□□□□ -1.95
VPS54-204ENST00000416400 A8MT66 165 aa2.89□□□□□ -1.95
VPS54-204ENST00000416400 HSBP1L1C9JCN9 74 aa2.89□□□□□ -1.95
VPS54-204ENST00000416400 SLC16A4O15374 487 aa2.89□□□□□ -1.95
VPS54-204ENST00000416400 B4GALT5O43286 388 aa2.89□□□□□ -1.95
VPS54-204ENST00000416400 HPGDSO60760 199 aa2.89□□□□□ -1.95
VPS54-204ENST00000416400 OR2A4O95047 310 aa2.89□□□□□ -1.95
VPS54-204ENST00000416400 YIF1AO95070 293 aa2.89□□□□□ -1.95
VPS54-204ENST00000416400 TCRBP04435 133 aa2.89□□□□□ -1.95
VPS54-204ENST00000416400 CRYBA1P05813 215 aa2.89□□□□□ -1.95
VPS54-204ENST00000416400 LINC00614P0C842 121 aa2.89□□□□□ -1.95
VPS54-204ENST00000416400 HTR1DP28221 377 aa2.89□□□□□ -1.95
VPS54-204ENST00000416400 FAUP35544 74 aaKnown RBP2.89□□□□□ -1.95
VPS54-204ENST00000416400 MYCNOSP40205 109 aa2.89□□□□□ -1.95
VPS54-204ENST00000416400 ACTR1BP42025 376 aa2.89□□□□□ -1.95
VPS54-204ENST00000416400 CRATP43155 626 aa2.89□□□□□ -1.95
VPS54-204ENST00000416400 DAPP51397 102 aa2.89□□□□□ -1.95
VPS54-204ENST00000416400 OR4D2P58180 307 aa2.89□□□□□ -1.95
VPS54-204ENST00000416400 OR2B8PP59922 312 aa2.89□□□□□ -1.95
VPS54-204ENST00000416400 C1QTNF8P60827 252 aa2.89□□□□□ -1.95
VPS54-204ENST00000416400 CDK5Q00535 292 aa2.89□□□□□ -1.95
VPS54-204ENST00000416400 GLO1Q04760 184 aa2.89□□□□□ -1.95
VPS54-204ENST00000416400 TPBGQ13641 420 aa2.89□□□□□ -1.95
VPS54-204ENST00000416400 GPR176Q14439 515 aa2.89□□□□□ -1.95
VPS54-204ENST00000416400 PAFAH1B3Q15102 231 aaKnown RBP2.89□□□□□ -1.95
VPS54-204ENST00000416400 TOMM34Q15785 309 aaPredicted RBP2.89□□□□□ -1.95
VPS54-204ENST00000416400 KRTAP13-3Q3SY46 172 aa2.89□□□□□ -1.95
VPS54-204ENST00000416400 HIST2H3PS2Q5TEC6 136 aa2.89□□□□□ -1.95
VPS54-204ENST00000416400 LRRN1Q6UXK5 716 aa2.89□□□□□ -1.95
VPS54-204ENST00000416400 NTM-AS1Q6ZSK4 140 aa2.89□□□□□ -1.95
VPS54-204ENST00000416400 HIST2H3AQ71DI3 136 aa2.89□□□□□ -1.95
VPS54-204ENST00000416400 MON2Q7Z3U7 1717 aa2.89□□□□□ -1.95
VPS54-204ENST00000416400 CYP4Z1Q86W10 505 aa2.89□□□□□ -1.95
VPS54-204ENST00000416400 LRRC28Q86X40 367 aaPredicted RBP2.89□□□□□ -1.95
VPS54-204ENST00000416400 ANGPTL5Q86XS5 388 aa2.89□□□□□ -1.95
VPS54-204ENST00000416400 WDFY1Q8IWB7 410 aa2.89□□□□□ -1.95
VPS54-204ENST00000416400 ZBTB8OSQ8IWT0 167 aa2.89□□□□□ -1.95
VPS54-204ENST00000416400 SLC30A8Q8IWU4 369 aa2.89□□□□□ -1.95
VPS54-204ENST00000416400 TOMM5Q8N4H5 51 aa2.89□□□□□ -1.95
VPS54-204ENST00000416400 ATP6V1C2Q8NEY4 427 aa2.89□□□□□ -1.95
VPS54-204ENST00000416400 SYNPRQ8TBG9 265 aa2.89□□□□□ -1.95
VPS54-204ENST00000416400 PHOSPHO2Q8TCD6 241 aa2.89□□□□□ -1.95
VPS54-204ENST00000416400 BAALCQ8WXS3 180 aa2.89□□□□□ -1.95
VPS54-204ENST00000416400 MAFIPQ8WZ33 124 aa2.89□□□□□ -1.95
VPS54-204ENST00000416400 FAM131CQ96AQ9 280 aa2.89□□□□□ -1.95
VPS54-204ENST00000416400 FLYWCH2Q96CP2 140 aaKnown RBP2.89□□□□□ -1.95
VPS54-204ENST00000416400 MRPS24Q96EL2 167 aaKnown RBP2.89□□□□□ -1.95
VPS54-204ENST00000416400 OR2A7Q96R45 310 aa2.89□□□□□ -1.95
VPS54-204ENST00000416400 OR4K3Q96R72 315 aa2.89□□□□□ -1.95
VPS54-204ENST00000416400 TAPBPLQ9BX59 468 aa2.89□□□□□ -1.95
VPS54-204ENST00000416400 OR52A5Q9H2C5 316 aa2.89□□□□□ -1.95
VPS54-204ENST00000416400 OR52D1Q9H346 318 aa2.89□□□□□ -1.95
VPS54-204ENST00000416400 KIR3DX1Q9H7L2 352 aa2.89□□□□□ -1.95
VPS54-204ENST00000416400 RNF122Q9H9V4 155 aa2.89□□□□□ -1.95
VPS54-204ENST00000416400 CISHQ9NSE2 258 aa2.89□□□□□ -1.95
VPS54-204ENST00000416400 ZNF355PQ9NSJ1 428 aa2.89□□□□□ -1.95
VPS54-204ENST00000416400 C14orf105Q9NVL8 296 aa2.89□□□□□ -1.95
VPS54-204ENST00000416400 NDUFB11Q9NX14 153 aa2.89□□□□□ -1.95
VPS54-204ENST00000416400 MS4A12Q9NXJ0 267 aa2.89□□□□□ -1.95
VPS54-204ENST00000416400 NDRG2Q9UN36 371 aaKnown RBP2.89□□□□□ -1.95
VPS54-204ENST00000416400 DIP2CQ9Y2E4 1556 aa2.89□□□□□ -1.95
VPS54-204ENST00000416400 FIS1Q9Y3D6 152 aa2.89□□□□□ -1.95
VPS54-204ENST00000416400 DNAJC15Q9Y5T4 150 aa2.89□□□□□ -1.95
VPS54-204ENST00000416400 TSSC4Q9Y5U2 329 aaPredicted RBP2.89□□□□□ -1.95
VPS54-204ENST00000416400 MYH1P12882 1939 aa2.89□□□□□ -1.95
VPS54-204ENST00000416400 MYH2Q9UKX2 1941 aa2.89□□□□□ -1.95
VPS54-204ENST00000416400 LAMA4Q16363 1823 aa2.89□□□□□ -1.95
VPS54-204ENST00000416400 NWD2Q9ULI1 1742 aa2.88□□□□□ -1.95
VPS54-204ENST00000416400 KANTRA0A1W2PQU2 76 aa2.88□□□□□ -1.95
VPS54-204ENST00000416400 SEC14L6B5MCN3 397 aa2.88□□□□□ -1.95
VPS54-204ENST00000416400 TNFRSF11BO00300 401 aa2.88□□□□□ -1.95
VPS54-204ENST00000416400 MAGEB4O15481 346 aaPredicted RBP2.88□□□□□ -1.95
VPS54-204ENST00000416400 CREBL2O60519 120 aaPredicted RBP2.88□□□□□ -1.95
VPS54-204ENST00000416400 FOXH1O75593 365 aa2.88□□□□□ -1.95
VPS54-204ENST00000416400 RPP14O95059 124 aaKnown RBP2.88□□□□□ -1.95
VPS54-204ENST00000416400 UBL3O95164 117 aa2.88□□□□□ -1.95
VPS54-204ENST00000416400 VAMP5O95183 116 aa2.88□□□□□ -1.95
VPS54-204ENST00000416400 MPC2O95563 127 aa2.88□□□□□ -1.95
VPS54-204ENST00000416400 APCSP02743 223 aa2.88□□□□□ -1.95
VPS54-204ENST00000416400 IGKV3-11P04433 115 aa2.88□□□□□ -1.95
VPS54-204ENST00000416400 CD2P06729 351 aa2.88□□□□□ -1.95
VPS54-204ENST00000416400 GP1BAP07359 652 aa2.88□□□□□ -1.95
VPS54-204ENST00000416400 OR4E1P0C645 316 aa2.88□□□□□ -1.95
VPS54-204ENST00000416400 METTL15P1P0C7V9 234 aa2.88□□□□□ -1.95
VPS54-204ENST00000416400 C1GALT1C1LP0DN25 315 aa2.88□□□□□ -1.95
VPS54-204ENST00000416400 HIST1H1BP16401 226 aaKnown RBP2.88□□□□□ -1.95
VPS54-204ENST00000416400 ZNF14P17017 642 aaPredicted RBP2.88□□□□□ -1.95
VPS54-204ENST00000416400 CCR7P32248 378 aa2.88□□□□□ -1.95
VPS54-204ENST00000416400 S100A3P33764 101 aa2.88□□□□□ -1.95
VPS54-204ENST00000416400 KDELR2P33947 212 aa2.88□□□□□ -1.95
VPS54-204ENST00000416400 IDH2P48735 452 aaKnown RBP2.88□□□□□ -1.95
VPS54-204ENST00000416400 SRP9P49458 86 aaKnown RBP2.88□□□□□ -1.95
VPS54-204ENST00000416400 GFERP55789 205 aa2.88□□□□□ -1.95
VPS54-204ENST00000416400 TAS2R39P59534 338 aa2.88□□□□□ -1.95
VPS54-204ENST00000416400 TPI1P60174 286 aa2.88□□□□□ -1.95
VPS54-204ENST00000416400 PFN3P60673 137 aa2.88□□□□□ -1.95
VPS54-204ENST00000416400 RAB8AP61006 207 aa2.88□□□□□ -1.95
VPS54-204ENST00000416400 C2orf80Q0P641 193 aa2.88□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms