RNA–Protein interactions for RNA: ENST00000415148.6

CD44-206, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 2,369 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-206ENST00000415148 ZNF525Q8N782 197 aa8.31□□□□□ -1.08
CD44-206ENST00000415148 OR2M7Q8NG81 312 aa8.31□□□□□ -1.08
CD44-206ENST00000415148 RNASE11Q8TAA1 199 aaKnown RBP8.31□□□□□ -1.08
CD44-206ENST00000415148 HIST1H2BLQ99880 126 aa8.31□□□□□ -1.08
CD44-206ENST00000415148 SDF2L1Q9HCN8 221 aa8.31□□□□□ -1.08
CD44-206ENST00000415148 VAX2Q9UIW0 290 aa8.31□□□□□ -1.08
CD44-206ENST00000415148 NGFP01138 241 aa8.3□□□□□ -1.08
CD44-206ENST00000415148 IFNA1P01562 189 aa8.3□□□□□ -1.08
CD44-206ENST00000415148 IGLV2-14P01704 120 aa8.3□□□□□ -1.08
CD44-206ENST00000415148 SNRPCP09234 159 aaKnown RBP8.3□□□□□ -1.08
CD44-206ENST00000415148 CCL2P13500 99 aa8.3□□□□□ -1.08
CD44-206ENST00000415148 IL2RGP31785 369 aa8.3□□□□□ -1.08
CD44-206ENST00000415148 TMEM41BQ5BJD5 291 aa8.3□□□□□ -1.08
CD44-206ENST00000415148 BEND4Q6ZU67 534 aa8.3□□□□□ -1.08
CD44-206ENST00000415148 HAPLN4Q86UW8 402 aa8.3□□□□□ -1.08
CD44-206ENST00000415148 Q8IYB0 196 aa8.3□□□□□ -1.08
CD44-206ENST00000415148 UBALD2Q8IYN6 164 aa8.3□□□□□ -1.08
CD44-206ENST00000415148 C1orf87Q8N0U7 546 aa8.3□□□□□ -1.08
CD44-206ENST00000415148 CT55Q8WUE5 264 aa8.3□□□□□ -1.08
CD44-206ENST00000415148 APH1AQ96BI3 265 aa8.3□□□□□ -1.08
CD44-206ENST00000415148 RCC1LQ96I51 464 aaKnown RBP8.3□□□□□ -1.08
CD44-206ENST00000415148 OR51I2Q9H344 312 aa8.3□□□□□ -1.08
CD44-206ENST00000415148 ZNF703Q9H7S9 590 aaPredicted RBP8.3□□□□□ -1.08
CD44-206ENST00000415148 LIN7CQ9NUP9 197 aaKnown RBP8.3□□□□□ -1.08
CD44-206ENST00000415148 GFOD1Q9NXC2 390 aa8.3□□□□□ -1.08
CD44-206ENST00000415148 TIMM9Q9Y5J7 89 aa8.3□□□□□ -1.08
CD44-206ENST00000415148 DOCK7Q96N67 2140 aa8.3□□□□□ -1.08
CD44-206ENST00000415148 TRBV24-1A0A075B6N3 115 aa8.3□□□□□ -1.08
CD44-206ENST00000415148 IGKV1-39P01597 117 aa8.3□□□□□ -1.08
CD44-206ENST00000415148 IGKV1D-39P04432 117 aa8.3□□□□□ -1.08
CD44-206ENST00000415148 DDTP30046 118 aa8.3□□□□□ -1.08
CD44-206ENST00000415148 Q6P435 159 aa8.3□□□□□ -1.08
CD44-206ENST00000415148 FAM180AQ6UWF9 173 aa8.3□□□□□ -1.08
CD44-206ENST00000415148 CENPVQ7Z7K6 275 aaPredicted RBP8.3□□□□□ -1.08
CD44-206ENST00000415148 OR51H1Q8NH63 302 aa8.3□□□□□ -1.08
CD44-206ENST00000415148 CA5BP1Q8WTZ4 195 aa8.3□□□□□ -1.08
CD44-206ENST00000415148 RDH5Q92781 318 aa8.3□□□□□ -1.08
CD44-206ENST00000415148 PACRGQ96M98 296 aaPredicted RBP8.3□□□□□ -1.08
CD44-206ENST00000415148 CACNG5Q9UF02 275 aa8.3□□□□□ -1.08
CD44-206ENST00000415148 CACNA1EQ15878 2313 aa8.3□□□□□ -1.08
CD44-206ENST00000415148 ESPL1Q14674 2120 aa8.3□□□□□ -1.08
CD44-206ENST00000415148 TRAV39A0A0B4J263 110 aa8.29□□□□□ -1.08
CD44-206ENST00000415148 ZNF503-AS2A6NEH8 195 aa8.29□□□□□ -1.08
CD44-206ENST00000415148 RNF212BA8MTL3 300 aa8.29□□□□□ -1.08
CD44-206ENST00000415148 J3QT63 122 aa8.29□□□□□ -1.08
CD44-206ENST00000415148 J3QW42 95 aa8.29□□□□□ -1.08
CD44-206ENST00000415148 NEURL1O76050 574 aa8.29□□□□□ -1.08
CD44-206ENST00000415148 PTBP3O95758 552 aaKnown RBP8.29□□□□□ -1.08
CD44-206ENST00000415148 OPN1MWP04001 364 aa8.29□□□□□ -1.08
CD44-206ENST00000415148 OPN1MW2P0DN77 364 aa8.29□□□□□ -1.08
CD44-206ENST00000415148 OPN1MW3P0DN78 364 aa8.29□□□□□ -1.08
CD44-206ENST00000415148 IAPPP10997 89 aa8.29□□□□□ -1.08
CD44-206ENST00000415148 TDGF1P13385 188 aa8.29□□□□□ -1.08
CD44-206ENST00000415148 TESK1Q15569 626 aa8.29□□□□□ -1.08
CD44-206ENST00000415148 SPINK14Q6IE38 97 aa8.29□□□□□ -1.08
CD44-206ENST00000415148 NECAP1Q8NC96 275 aa8.29□□□□□ -1.08
CD44-206ENST00000415148 MISP3Q96FF7 219 aa8.29□□□□□ -1.08
CD44-206ENST00000415148 ZNF488Q96MN9 340 aa8.29□□□□□ -1.08
CD44-206ENST00000415148 AGMATQ9BSE5 352 aa8.29□□□□□ -1.08
CD44-206ENST00000415148 WDR61Q9GZS3 305 aaKnown RBP8.29□□□□□ -1.08
CD44-206ENST00000415148 OR14J1Q9UGF5 321 aa8.29□□□□□ -1.08
CD44-206ENST00000415148 WIPI2Q9Y4P8 454 aa8.29□□□□□ -1.08
CD44-206ENST00000415148 PI4KAP42356 2102 aa8.29□□□□□ -1.08
CD44-206ENST00000415148 A0A087X0M5 115 aa8.29□□□□□ -1.08
CD44-206ENST00000415148 A0A1B0GX30 115 aa8.29□□□□□ -1.08
CD44-206ENST00000415148 A0A1W2PR80 420 aa8.29□□□□□ -1.08
CD44-206ENST00000415148 HMGB3O15347 200 aaKnown RBP8.29□□□□□ -1.08
CD44-206ENST00000415148 IGKV1-5P01602 117 aa8.29□□□□□ -1.08
CD44-206ENST00000415148 GZMHP20718 246 aa8.29□□□□□ -1.08
CD44-206ENST00000415148 ACP1P24666 158 aa8.29□□□□□ -1.08
CD44-206ENST00000415148 SRYQ05066 204 aa8.29□□□□□ -1.08
CD44-206ENST00000415148 ZNF585BQ52M93 769 aa8.29□□□□□ -1.08
CD44-206ENST00000415148 C9orf135Q5VTT2 229 aa8.29□□□□□ -1.08
CD44-206ENST00000415148 ZNF497Q6ZNH5 498 aa8.29□□□□□ -1.08
CD44-206ENST00000415148 REC114Q7Z4M0 266 aa8.29□□□□□ -1.08
CD44-206ENST00000415148 ZBTB34Q8NCN2 500 aa8.29□□□□□ -1.08
CD44-206ENST00000415148 OR4X1Q8NH49 305 aa8.29□□□□□ -1.08
CD44-206ENST00000415148 UBALD1Q8TB05 177 aa8.29□□□□□ -1.08
CD44-206ENST00000415148 THOC3Q96J01 351 aaKnown RBP8.29□□□□□ -1.08
CD44-206ENST00000415148 TMEM9BQ9NQ34 198 aa8.29□□□□□ -1.08
CD44-206ENST00000415148 UFSP2Q9NUQ7 469 aa8.29□□□□□ -1.08
CD44-206ENST00000415148 ARGFXA6NJG6 315 aa8.28□□□□□ -1.08
CD44-206ENST00000415148 FOXG1P55316 489 aaPredicted RBP8.28□□□□□ -1.08
CD44-206ENST00000415148 P2RY6Q15077 328 aa8.28□□□□□ -1.08
CD44-206ENST00000415148 ATP6V1FQ16864 119 aa8.28□□□□□ -1.08
CD44-206ENST00000415148 SSX9Q7RTT3 188 aa8.28□□□□□ -1.08
CD44-206ENST00000415148 TIPARPQ7Z3E1 657 aaKnown RBP8.28□□□□□ -1.08
CD44-206ENST00000415148 LILRB2Q8N423 598 aa8.28□□□□□ -1.08
CD44-206ENST00000415148 OR1K1Q8NGR3 316 aa8.28□□□□□ -1.08
CD44-206ENST00000415148 ELOVL1Q9BW60 279 aa8.28□□□□□ -1.08
CD44-206ENST00000415148 RTL8AQ9BWD3 113 aa8.28□□□□□ -1.08
CD44-206ENST00000415148 MBNL3Q9NUK0 354 aaKnown RBP8.28□□□□□ -1.08
CD44-206ENST00000415148 PLA2G3Q9NZ20 509 aa8.28□□□□□ -1.08
CD44-206ENST00000415148 OR1A1Q9P1Q5 309 aa8.28□□□□□ -1.08
CD44-206ENST00000415148 ABI3Q9P2A4 366 aa8.28□□□□□ -1.08
CD44-206ENST00000415148 COL6A3P12111 3177 aa8.28□□□□□ -1.08
CD44-206ENST00000415148 KMT2EQ8IZD2 1858 aa8.28□□□□□ -1.08
CD44-206ENST00000415148 IL18BPO95998 194 aa8.28□□□□□ -1.08
CD44-206ENST00000415148 METTL15P1P0C7V9 234 aa8.28□□□□□ -1.08
CD44-206ENST00000415148 WNT5AP41221 380 aa8.28□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms