RNA–Protein interactions for RNA: ENST00000409809.5

COL6A3-206, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,916 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-206ENST00000409809 FGF17O60258 216 aa11.33□□□□□ -0.6
COL6A3-206ENST00000409809 APOMO95445 188 aa11.33□□□□□ -0.6
COL6A3-206ENST00000409809 FGF5P12034 268 aa11.33□□□□□ -0.6
COL6A3-206ENST00000409809 GZMHP20718 246 aa11.33□□□□□ -0.6
COL6A3-206ENST00000409809 RNFT1Q5M7Z0 435 aa11.33□□□□□ -0.6
COL6A3-206ENST00000409809 OR8I2Q8N0Y5 310 aa11.33□□□□□ -0.6
COL6A3-206ENST00000409809 C10orf128Q5T292 105 aa11.33□□□□□ -0.6
COL6A3-206ENST00000409809 FGF21Q9NSA1 209 aa11.33□□□□□ -0.6
COL6A3-206ENST00000409809 LINC00587B1AMM8 73 aa11.33□□□□□ -0.6
COL6A3-206ENST00000409809 SBK3P0C264 359 aa11.33□□□□□ -0.6
COL6A3-206ENST00000409809 SLC25A2Q9BXI2 301 aa11.33□□□□□ -0.6
COL6A3-206ENST00000409809 STRCP1A6NGW2 1772 aa11.33□□□□□ -0.6
COL6A3-206ENST00000409809 KBTBD11-OT1A0A1B0GTJ5 212 aa11.33□□□□□ -0.6
COL6A3-206ENST00000409809 ZNF735P0CB33 412 aa11.33□□□□□ -0.6
COL6A3-206ENST00000409809 RPS4XP62701 263 aaKnown RBP11.33□□□□□ -0.6
COL6A3-206ENST00000409809 SPANXN1Q5VSR9 72 aa11.33□□□□□ -0.6
COL6A3-206ENST00000409809 KCNE1BA0A087WTH5 132 aa11.33□□□□□ -0.6
COL6A3-206ENST00000409809 OR1L8Q8NGR8 309 aa11.33□□□□□ -0.6
COL6A3-206ENST00000409809 C1RLQ9NZP8 487 aa11.33□□□□□ -0.6
COL6A3-206ENST00000409809 TBL2Q9Y4P3 447 aaKnown RBP11.33□□□□□ -0.6
COL6A3-206ENST00000409809 PCNX2A6NKB5 2137 aa11.33□□□□□ -0.6
COL6A3-206ENST00000409809 SIPA1L1O43166 1804 aa11.32□□□□□ -0.6
COL6A3-206ENST00000409809 IGLV3-25P01717 112 aa11.32□□□□□ -0.6
COL6A3-206ENST00000409809 CD200R1LQ6Q8B3 271 aa11.32□□□□□ -0.6
COL6A3-206ENST00000409809 DNAJC25-GNG10A0A024R161 153 aa11.32□□□□□ -0.6
COL6A3-206ENST00000409809 EML2O95834 649 aa11.32□□□□□ -0.6
COL6A3-206ENST00000409809 MSRB3Q8IXL7 192 aa11.32□□□□□ -0.6
COL6A3-206ENST00000409809 OR9G4Q8NGQ1 327 aa11.32□□□□□ -0.6
COL6A3-206ENST00000409809 C7orf71A4D174 169 aa11.32□□□□□ -0.6
COL6A3-206ENST00000409809 Q5PR19 223 aa11.32□□□□□ -0.6
COL6A3-206ENST00000409809 SRSF4Q08170 494 aaKnown RBP11.32□□□□□ -0.6
COL6A3-206ENST00000409809 S100A7L2Q5SY68 101 aa11.32□□□□□ -0.6
COL6A3-206ENST00000409809 VHLLQ6RSH7 139 aa11.32□□□□□ -0.6
COL6A3-206ENST00000409809 POU2F2P09086 479 aa11.32□□□□□ -0.6
COL6A3-206ENST00000409809 GAGE2BQ13066 116 aa11.32□□□□□ -0.6
COL6A3-206ENST00000409809 GAGE2EQ4V326 116 aa11.32□□□□□ -0.6
COL6A3-206ENST00000409809 DIRC2Q96SL1 478 aa11.32□□□□□ -0.6
COL6A3-206ENST00000409809 SCNM1Q9BWG6 230 aa11.32□□□□□ -0.6
COL6A3-206ENST00000409809 GAGE2DQ9UEU5 116 aa11.32□□□□□ -0.6
COL6A3-206ENST00000409809 MRM2Q9UI43 246 aaKnown RBP11.32□□□□□ -0.6
COL6A3-206ENST00000409809 CAPZBP47756 277 aa11.32□□□□□ -0.6
COL6A3-206ENST00000409809 CT83Q5H943 113 aa11.32□□□□□ -0.6
COL6A3-206ENST00000409809 STPG3Q8N7X2 389 aa11.32□□□□□ -0.6
COL6A3-206ENST00000409809 SDHCQ99643 169 aaPredicted RBP11.32□□□□□ -0.6
COL6A3-206ENST00000409809 TPSD1Q9BZJ3 242 aa11.32□□□□□ -0.6
COL6A3-206ENST00000409809 SPRY1O43609 319 aaPredicted RBP11.32□□□□□ -0.6
COL6A3-206ENST00000409809 INSM1Q01101 510 aaPredicted RBP11.32□□□□□ -0.6
COL6A3-206ENST00000409809 AGERQ15109 404 aa11.32□□□□□ -0.6
COL6A3-206ENST00000409809 ACER2Q5QJU3 275 aa11.32□□□□□ -0.6
COL6A3-206ENST00000409809 CYP2G1PQ6ZSU1 146 aa11.32□□□□□ -0.6
COL6A3-206ENST00000409809 SARAFQ96BY9 339 aa11.32□□□□□ -0.6
COL6A3-206ENST00000409809 A0A0U1RQV5 110 aa11.31□□□□□ -0.6
COL6A3-206ENST00000409809 B4GALT1P15291 398 aa11.31□□□□□ -0.6
COL6A3-206ENST00000409809 GALNSP34059 522 aa11.31□□□□□ -0.6
COL6A3-206ENST00000409809 ID1P41134 155 aa11.31□□□□□ -0.6
COL6A3-206ENST00000409809 Q8WTZ3 238 aa11.31□□□□□ -0.6
COL6A3-206ENST00000409809 KIR2DL4Q99706 377 aa11.31□□□□□ -0.6
COL6A3-206ENST00000409809 AKIRIN1Q9H9L7 192 aaPredicted RBP11.31□□□□□ -0.6
COL6A3-206ENST00000409809 TMEM189A5PLL7 270 aa11.31□□□□□ -0.6
COL6A3-206ENST00000409809 ALG1L2C9J202 215 aa11.31□□□□□ -0.6
COL6A3-206ENST00000409809 IGLV3-27P01718 113 aa11.31□□□□□ -0.6
COL6A3-206ENST00000409809 CLLU1OSQ5K130 101 aa11.31□□□□□ -0.6
COL6A3-206ENST00000409809 LDLRAD2Q5SZI1 272 aa11.31□□□□□ -0.6
COL6A3-206ENST00000409809 WDR31Q8NA23 367 aa11.31□□□□□ -0.6
COL6A3-206ENST00000409809 SMIM8Q96KF7 97 aa11.31□□□□□ -0.6
COL6A3-206ENST00000409809 MEX3AA1L020 520 aaKnown RBP11.31□□□□□ -0.6
COL6A3-206ENST00000409809 LYZP61626 148 aa11.31□□□□□ -0.6
COL6A3-206ENST00000409809 HIGD1AQ9Y241 93 aa11.31□□□□□ -0.6
COL6A3-206ENST00000409809 CRXO43186 299 aaPredicted RBP11.31□□□□□ -0.6
COL6A3-206ENST00000409809 PPP1CCP36873 323 aaKnown RBP11.31□□□□□ -0.6
COL6A3-206ENST00000409809 ZNF77Q15935 545 aa11.31□□□□□ -0.6
COL6A3-206ENST00000409809 PROCRQ9UNN8 238 aa11.31□□□□□ -0.6
COL6A3-206ENST00000409809 GJB3O75712 270 aa11.31□□□□□ -0.6
COL6A3-206ENST00000409809 NDUFB4O95168 129 aa11.31□□□□□ -0.6
COL6A3-206ENST00000409809 ORM2P19652 201 aa11.31□□□□□ -0.6
COL6A3-206ENST00000409809 MPLP40238 635 aa11.31□□□□□ -0.6
COL6A3-206ENST00000409809 LGALS7P47929 136 aa11.31□□□□□ -0.6
COL6A3-206ENST00000409809 EMDP50402 254 aa11.31□□□□□ -0.6
COL6A3-206ENST00000409809 ANKRD34AQ69YU3 496 aa11.31□□□□□ -0.6
COL6A3-206ENST00000409809 OR10AC1Q8NH08 325 aa11.31□□□□□ -0.6
COL6A3-206ENST00000409809 ZNF296Q8WUU4 475 aaPredicted RBP11.31□□□□□ -0.6
COL6A3-206ENST00000409809 RNF122Q9H9V4 155 aa11.31□□□□□ -0.6
COL6A3-206ENST00000409809 TNRC6AQ8NDV7 1962 aaKnown RBP11.31□□□□□ -0.6
COL6A3-206ENST00000409809 PSG9Q00887 426 aa11.31□□□□□ -0.6
COL6A3-206ENST00000409809 GAPTQ8N292 157 aa11.31□□□□□ -0.6
COL6A3-206ENST00000409809 NKX2-6A6NCS4 301 aa11.31□□□□□ -0.6
COL6A3-206ENST00000409809 KCNMB1Q16558 191 aa11.31□□□□□ -0.6
COL6A3-206ENST00000409809 HKR1P10072 659 aa11.3□□□□□ -0.6
COL6A3-206ENST00000409809 OR2K2Q8NGT1 345 aa11.3□□□□□ -0.6
COL6A3-206ENST00000409809 IGLV3-16A0A075B6K0 115 aa11.3□□□□□ -0.6
COL6A3-206ENST00000409809 GPX4P36969 197 aaPredicted RBP11.3□□□□□ -0.6
COL6A3-206ENST00000409809 PMVKQ15126 192 aa11.3□□□□□ -0.6
COL6A3-206ENST00000409809 MMD2Q8IY49 270 aa11.3□□□□□ -0.6
COL6A3-206ENST00000409809 LRRC75BQ2VPJ9 315 aa11.3□□□□□ -0.6
COL6A3-206ENST00000409809 PLPPR1Q8TBJ4 325 aa11.3□□□□□ -0.6
COL6A3-206ENST00000409809 MS4A6AQ9H2W1 248 aa11.3□□□□□ -0.6
COL6A3-206ENST00000409809 FRRS1LQ9P0K9 344 aa11.3□□□□□ -0.6
COL6A3-206ENST00000409809 NDUFB3O43676 98 aa11.3□□□□□ -0.6
COL6A3-206ENST00000409809 F12P00748 615 aaPredicted RBP11.3□□□□□ -0.6
COL6A3-206ENST00000409809 C19orf54Q5BKX5 351 aa11.3□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms