RNA–Protein interactions for RNA: ENST00000409326.6

PTCD3-202, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 4

Gene PTCD3, Length 522 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-202ENST00000409326 SOX6P35712 828 aa16.35■□□□□ 0.21
PTCD3-202ENST00000409326 ZNF137PP52743 207 aa16.35■□□□□ 0.21
PTCD3-202ENST00000409326 ACTG1P63261 375 aa16.35■□□□□ 0.21
PTCD3-202ENST00000409326 TMEM69Q5SWH9 247 aa16.35■□□□□ 0.21
PTCD3-202ENST00000409326 DYNC2LI1Q8TCX1 351 aa16.35■□□□□ 0.21
PTCD3-202ENST00000409326 MAFIPQ8WZ33 124 aa16.35■□□□□ 0.21
PTCD3-202ENST00000409326 CABLES2Q9BTV7 478 aa16.35■□□□□ 0.21
PTCD3-202ENST00000409326 AUNIPQ9H7T9 357 aa16.35■□□□□ 0.21
PTCD3-202ENST00000409326 SLC23A1Q9UHI7 598 aa16.35■□□□□ 0.21
PTCD3-202ENST00000409326 IGKV1-6A0A0C4DH72 117 aa16.34■□□□□ 0.21
PTCD3-202ENST00000409326 HSD17B6O14756 317 aa16.34■□□□□ 0.21
PTCD3-202ENST00000409326 SSX5O60225 188 aa16.34■□□□□ 0.21
PTCD3-202ENST00000409326 DIRAS3O95661 229 aa16.34■□□□□ 0.21
PTCD3-202ENST00000409326 MNDAP41218 407 aa16.34■□□□□ 0.21
PTCD3-202ENST00000409326 RAB7AP51149 207 aa16.34■□□□□ 0.21
PTCD3-202ENST00000409326 RAB13P51153 203 aa16.34■□□□□ 0.21
PTCD3-202ENST00000409326 DIAPH2-AS1Q14236 149 aa16.34■□□□□ 0.21
PTCD3-202ENST00000409326 HERPUD1Q15011 391 aa16.34■□□□□ 0.21
PTCD3-202ENST00000409326 LY6EQ16553 131 aa16.34■□□□□ 0.21
PTCD3-202ENST00000409326 LIAT1Q6ZQX7 453 aa16.34■□□□□ 0.21
PTCD3-202ENST00000409326 ST6GALNAC6Q969X2 333 aa16.34■□□□□ 0.21
PTCD3-202ENST00000409326 RBM38Q9H0Z9 239 aaKnown RBP16.34■□□□□ 0.21
PTCD3-202ENST00000409326 CCDC59Q9P031 241 aaKnown RBP16.34■□□□□ 0.21
PTCD3-202ENST00000409326 OR1A1Q9P1Q5 309 aa16.34■□□□□ 0.21
PTCD3-202ENST00000409326 TCF19Q9Y242 345 aa16.34■□□□□ 0.21
PTCD3-202ENST00000409326 A0A1W2PPI3 338 aa16.33■□□□□ 0.2
PTCD3-202ENST00000409326 HSPA12AO43301 675 aa16.33■□□□□ 0.2
PTCD3-202ENST00000409326 HPGDSO60760 199 aa16.33■□□□□ 0.2
PTCD3-202ENST00000409326 GSTT2P0CG29 244 aa16.33■□□□□ 0.2
PTCD3-202ENST00000409326 GSTT2BP0CG30 244 aa16.33■□□□□ 0.2
PTCD3-202ENST00000409326 HKR1P10072 659 aa16.33■□□□□ 0.2
PTCD3-202ENST00000409326 BRS3P32247 399 aa16.33■□□□□ 0.2
PTCD3-202ENST00000409326 TAS2R20P59543 309 aa16.33■□□□□ 0.2
PTCD3-202ENST00000409326 ZNF816Q0VGE8 651 aaPredicted RBP16.33■□□□□ 0.2
PTCD3-202ENST00000409326 OR8H3Q8N146 312 aa16.33■□□□□ 0.2
PTCD3-202ENST00000409326 OR2AK2Q8NG84 335 aa16.33■□□□□ 0.2
PTCD3-202ENST00000409326 IGKV1D-8A0A087WSZ0 117 aa16.32■□□□□ 0.2
PTCD3-202ENST00000409326 ITGB1BP1O14713 200 aa16.32■□□□□ 0.2
PTCD3-202ENST00000409326 CRYBA1P05813 215 aa16.32■□□□□ 0.2
PTCD3-202ENST00000409326 ELK1P19419 428 aa16.32■□□□□ 0.2
PTCD3-202ENST00000409326 LYG1Q8N1E2 194 aa16.32■□□□□ 0.2
PTCD3-202ENST00000409326 DTX3Q8N9I9 347 aa16.32■□□□□ 0.2
PTCD3-202ENST00000409326 EDARADDQ8WWZ3 215 aa16.32■□□□□ 0.2
PTCD3-202ENST00000409326 ST6GALNAC5Q9BVH7 336 aa16.32■□□□□ 0.2
PTCD3-202ENST00000409326 TOLLIPQ9H0E2 274 aa16.32■□□□□ 0.2
PTCD3-202ENST00000409326 IFI27L2Q9H2X8 130 aa16.32■□□□□ 0.2
PTCD3-202ENST00000409326 PITPNC1Q9UKF7 332 aa16.32■□□□□ 0.2
PTCD3-202ENST00000409326 TMEM89A2RUT3 159 aa16.31■□□□□ 0.2
PTCD3-202ENST00000409326 A6NDX4 124 aa16.31■□□□□ 0.2
PTCD3-202ENST00000409326 CCDC160A6NGH7 325 aa16.31■□□□□ 0.2
PTCD3-202ENST00000409326 GAPDHP04406 335 aaKnown RBP16.31■□□□□ 0.2
PTCD3-202ENST00000409326 PTHLHP12272 177 aa16.31■□□□□ 0.2
PTCD3-202ENST00000409326 CEACAM6P40199 344 aa16.31■□□□□ 0.2
PTCD3-202ENST00000409326 IGSF11Q5DX21 431 aa16.31■□□□□ 0.2
PTCD3-202ENST00000409326 DHRS7BQ6IAN0 325 aaPredicted RBP16.31■□□□□ 0.2
PTCD3-202ENST00000409326 ODF3L1Q8IXM7 274 aa16.31■□□□□ 0.2
PTCD3-202ENST00000409326 RTN4IP1Q8WWV3 396 aaPredicted RBP16.31■□□□□ 0.2
PTCD3-202ENST00000409326 PARP12Q9H0J9 701 aaKnown RBP16.31■□□□□ 0.2
PTCD3-202ENST00000409326 RAB18Q9NP72 206 aa16.31■□□□□ 0.2
PTCD3-202ENST00000409326 C1RLQ9NZP8 487 aa16.31■□□□□ 0.2
PTCD3-202ENST00000409326 TRBV6-7A0A0A0MS04 114 aa16.3■□□□□ 0.2
PTCD3-202ENST00000409326 IGHV1-3A0A0C4DH29 117 aa16.3■□□□□ 0.2
PTCD3-202ENST00000409326 SMIM31A0A1B0GVY4 71 aa16.3■□□□□ 0.2
PTCD3-202ENST00000409326 TIMM23O14925 209 aa16.3■□□□□ 0.2
PTCD3-202ENST00000409326 BET1O15155 118 aa16.3■□□□□ 0.2
PTCD3-202ENST00000409326 ST8SIA5O15466 376 aa16.3■□□□□ 0.2
PTCD3-202ENST00000409326 TXNL1O43396 289 aa16.3■□□□□ 0.2
PTCD3-202ENST00000409326 LPLP06858 475 aa16.3■□□□□ 0.2
PTCD3-202ENST00000409326 REG1BP48304 166 aa16.3■□□□□ 0.2
PTCD3-202ENST00000409326 CCBE1Q6UXH8 406 aaPredicted RBP16.3■□□□□ 0.2
PTCD3-202ENST00000409326 OR10J5Q8NHC4 309 aa16.3■□□□□ 0.2
PTCD3-202ENST00000409326 CFHR4Q92496 578 aa16.3■□□□□ 0.2
PTCD3-202ENST00000409326 GCDHQ92947 438 aaPredicted RBP16.3■□□□□ 0.2
PTCD3-202ENST00000409326 RDH8Q9NYR8 311 aa16.3■□□□□ 0.2
PTCD3-202ENST00000409326 RSL24D1Q9UHA3 163 aaKnown RBP16.3■□□□□ 0.2
PTCD3-202ENST00000409326 FAM90A9PA6NNJ1 464 aa16.29■□□□□ 0.2
PTCD3-202ENST00000409326 FAM25AB3EWG3 89 aa16.29■□□□□ 0.2
PTCD3-202ENST00000409326 FAM25CB3EWG5 89 aa16.29■□□□□ 0.2
PTCD3-202ENST00000409326 FAM25GB3EWG6 89 aa16.29■□□□□ 0.2
PTCD3-202ENST00000409326 ZNF701M0R085 212 aaPredicted RBP16.29■□□□□ 0.2
PTCD3-202ENST00000409326 LANCL1O43813 399 aa16.29■□□□□ 0.2
PTCD3-202ENST00000409326 CHST1O43916 411 aa16.29■□□□□ 0.2
PTCD3-202ENST00000409326 CD24P25063 80 aa16.29■□□□□ 0.2
PTCD3-202ENST00000409326 CBX5P45973 191 aa16.29■□□□□ 0.2
PTCD3-202ENST00000409326 RELBQ01201 579 aa16.29■□□□□ 0.2
PTCD3-202ENST00000409326 HABP2Q14520 560 aaPredicted RBP16.29■□□□□ 0.2
PTCD3-202ENST00000409326 TMEM219Q86XT9 240 aa16.29■□□□□ 0.2
PTCD3-202ENST00000409326 TGIF2LXQ8IUE1 241 aa16.29■□□□□ 0.2
PTCD3-202ENST00000409326 DRAM1Q8N682 238 aa16.29■□□□□ 0.2
PTCD3-202ENST00000409326 OR56B4Q8NH76 319 aa16.29■□□□□ 0.2
PTCD3-202ENST00000409326 TAF15Q92804 592 aaKnown RBP eCLIP16.29■□□□□ 0.2
PTCD3-202ENST00000409326 AGMATQ9BSE5 352 aa16.29■□□□□ 0.2
PTCD3-202ENST00000409326 C11orf54Q9H0W9 315 aaPredicted RBP16.29■□□□□ 0.2
PTCD3-202ENST00000409326 ANXA10Q9UJ72 324 aa16.29■□□□□ 0.2
PTCD3-202ENST00000409326 SAA2-SAA4A0A096LPE2 208 aa16.28■□□□□ 0.2
PTCD3-202ENST00000409326 NDUFA7O95182 113 aa16.28■□□□□ 0.2
PTCD3-202ENST00000409326 HLA-DQB1P01920 261 aa16.28■□□□□ 0.2
PTCD3-202ENST00000409326 SAA2P0DJI9 122 aaPredicted RBP16.28■□□□□ 0.2
PTCD3-202ENST00000409326 COMPP49747 757 aaPredicted RBP16.28■□□□□ 0.2
PTCD3-202ENST00000409326 FAM71F2Q6NXP2 309 aa16.28■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms