RNA–Protein interactions for RNA: ENST00000394943.7

LIMA1-202, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-202ENST00000394943 BATF2Q8N1L9 274 aa5.65□□□□□ -1.51
LIMA1-202ENST00000394943 DYNAPQ8N1N2 210 aa5.65□□□□□ -1.51
LIMA1-202ENST00000394943 ZNF645Q8N7E2 425 aa5.65□□□□□ -1.51
LIMA1-202ENST00000394943 RTN4IP1Q8WWV3 396 aaPredicted RBP5.65□□□□□ -1.51
LIMA1-202ENST00000394943 ARL11Q969Q4 196 aa5.65□□□□□ -1.51
LIMA1-202ENST00000394943 DPM3Q9P2X0 92 aa5.65□□□□□ -1.51
LIMA1-202ENST00000394943 ZNF69Q9UC07 566 aa5.65□□□□□ -1.51
LIMA1-202ENST00000394943 PSG11Q9UQ72 335 aa5.65□□□□□ -1.51
LIMA1-202ENST00000394943 LEUTXA8MZ59 168 aa5.64□□□□□ -1.51
LIMA1-202ENST00000394943 ARHGDIBP52566 201 aa5.64□□□□□ -1.51
LIMA1-202ENST00000394943 ARF6P62330 175 aa5.64□□□□□ -1.51
LIMA1-202ENST00000394943 MEF2DQ14814 521 aa5.64□□□□□ -1.51
LIMA1-202ENST00000394943 MRGPRG-AS1Q2M3A8 158 aa5.64□□□□□ -1.51
LIMA1-202ENST00000394943 PDLIM3Q53GG5 364 aaPredicted RBP5.64□□□□□ -1.51
LIMA1-202ENST00000394943 ZNF66Q6ZN08 573 aa5.64□□□□□ -1.51
LIMA1-202ENST00000394943 BEST4Q8NFU0 473 aa5.64□□□□□ -1.51
LIMA1-202ENST00000394943 OR8H1Q8NGG4 311 aa5.64□□□□□ -1.51
LIMA1-202ENST00000394943 OR4K15Q8NH41 348 aa5.64□□□□□ -1.51
LIMA1-202ENST00000394943 ABHD14AQ9BUJ0 271 aa5.64□□□□□ -1.51
LIMA1-202ENST00000394943 ITGB1BP2Q9UKP3 347 aa5.64□□□□□ -1.51
LIMA1-202ENST00000394943 DOCK11Q5JSL3 2073 aa5.64□□□□□ -1.51
LIMA1-202ENST00000394943 HIVEP1P15822 2718 aa5.64□□□□□ -1.51
LIMA1-202ENST00000394943 A0A1W2PQ09 198 aa5.64□□□□□ -1.51
LIMA1-202ENST00000394943 SMIM30A4D0T7 59 aa5.64□□□□□ -1.51
LIMA1-202ENST00000394943 NAP1L6A6NFF2 107 aa5.64□□□□□ -1.51
LIMA1-202ENST00000394943 RBBP9O75884 186 aa5.64□□□□□ -1.51
LIMA1-202ENST00000394943 P0C879 139 aa5.64□□□□□ -1.51
LIMA1-202ENST00000394943 BTCP35070 178 aa5.64□□□□□ -1.51
LIMA1-202ENST00000394943 TAS2R19P59542 299 aa5.64□□□□□ -1.51
LIMA1-202ENST00000394943 GNG2P59768 71 aa5.64□□□□□ -1.51
LIMA1-202ENST00000394943 BRICD5Q6PL45 260 aa5.64□□□□□ -1.51
LIMA1-202ENST00000394943 MAPK1IP1LQ8NDC0 245 aa5.64□□□□□ -1.51
LIMA1-202ENST00000394943 OR52I2Q8NH67 350 aa5.64□□□□□ -1.51
LIMA1-202ENST00000394943 NUDCD2Q8WVJ2 157 aa5.64□□□□□ -1.51
LIMA1-202ENST00000394943 NABP2Q9BQ15 211 aa5.64□□□□□ -1.51
LIMA1-202ENST00000394943 C11orf54Q9H0W9 315 aaPredicted RBP5.64□□□□□ -1.51
LIMA1-202ENST00000394943 PALMDQ9NP74 551 aa5.64□□□□□ -1.51
LIMA1-202ENST00000394943 PLSCR3Q9NRY6 295 aa5.64□□□□□ -1.51
LIMA1-202ENST00000394943 SLC31A2O15432 143 aa5.64□□□□□ -1.51
LIMA1-202ENST00000394943 SPDEFO95238 335 aa5.64□□□□□ -1.51
LIMA1-202ENST00000394943 EPHA1P21709 976 aa5.64□□□□□ -1.51
LIMA1-202ENST00000394943 SAA4P35542 130 aa5.64□□□□□ -1.51
LIMA1-202ENST00000394943 PPP5CP53041 499 aa5.64□□□□□ -1.51
LIMA1-202ENST00000394943 SNU13P55769 128 aaKnown RBP5.64□□□□□ -1.51
LIMA1-202ENST00000394943 EDDM3BP56851 147 aa5.64□□□□□ -1.51
LIMA1-202ENST00000394943 CCDC144NLQ6NUI1 221 aa5.64□□□□□ -1.51
LIMA1-202ENST00000394943 TPRX1Q8N7U7 411 aa5.64□□□□□ -1.51
LIMA1-202ENST00000394943 FCAMRQ8WWV6 532 aa5.64□□□□□ -1.51
LIMA1-202ENST00000394943 H1FXQ92522 213 aaKnown RBP5.64□□□□□ -1.51
LIMA1-202ENST00000394943 BORCS5Q969J3 196 aa5.64□□□□□ -1.51
LIMA1-202ENST00000394943 ONECUT1Q9UBC0 465 aa5.64□□□□□ -1.51
LIMA1-202ENST00000394943 OR5H14A6NHG9 310 aa5.63□□□□□ -1.51
LIMA1-202ENST00000394943 RAB29O14966 203 aa5.63□□□□□ -1.51
LIMA1-202ENST00000394943 TSPAN9O75954 239 aa5.63□□□□□ -1.51
LIMA1-202ENST00000394943 RRASP10301 218 aa5.63□□□□□ -1.51
LIMA1-202ENST00000394943 CEACAM3P40198 252 aa5.63□□□□□ -1.51
LIMA1-202ENST00000394943 BRWD1-AS2P59051 145 aa5.63□□□□□ -1.51
LIMA1-202ENST00000394943 GNMTQ14749 295 aa5.63□□□□□ -1.51
LIMA1-202ENST00000394943 TMEM177Q53S58 311 aa5.63□□□□□ -1.51
LIMA1-202ENST00000394943 ADTRPQ96IZ2 230 aa5.63□□□□□ -1.51
LIMA1-202ENST00000394943 WDR12Q9GZL7 423 aaKnown RBP5.63□□□□□ -1.51
LIMA1-202ENST00000394943 NARFLQ9H6Q4 476 aa5.63□□□□□ -1.51
LIMA1-202ENST00000394943 YAE1D1Q9NRH1 226 aa5.63□□□□□ -1.51
LIMA1-202ENST00000394943 OR1A1Q9P1Q5 309 aa5.63□□□□□ -1.51
LIMA1-202ENST00000394943 TEX15Q9BXT5 2789 aa5.63□□□□□ -1.51
LIMA1-202ENST00000394943 CELSR1Q9NYQ6 3014 aa5.63□□□□□ -1.51
LIMA1-202ENST00000394943 SMAD7O15105 426 aaKnown RBP5.63□□□□□ -1.51
LIMA1-202ENST00000394943 FGF16O43320 207 aa5.63□□□□□ -1.51
LIMA1-202ENST00000394943 HTR1DP28221 377 aa5.63□□□□□ -1.51
LIMA1-202ENST00000394943 TALDO1P37837 337 aa5.63□□□□□ -1.51
LIMA1-202ENST00000394943 DGCR2P98153 550 aa5.63□□□□□ -1.51
LIMA1-202ENST00000394943 EDDM3AQ14507 147 aa5.63□□□□□ -1.51
LIMA1-202ENST00000394943 IGSF11Q5DX21 431 aa5.63□□□□□ -1.51
LIMA1-202ENST00000394943 NKAPLQ5M9Q1 402 aa5.63□□□□□ -1.51
LIMA1-202ENST00000394943 GPR157Q5UAW9 335 aa5.63□□□□□ -1.51
LIMA1-202ENST00000394943 PNKDQ8N490 385 aa5.63□□□□□ -1.51
LIMA1-202ENST00000394943 OR52L2PQ8NGH6 319 aa5.63□□□□□ -1.51
LIMA1-202ENST00000394943 SETD6Q8TBK2 473 aa5.63□□□□□ -1.51
LIMA1-202ENST00000394943 IGHV1-3A0A0C4DH29 117 aa5.63□□□□□ -1.51
LIMA1-202ENST00000394943 TMEM89A2RUT3 159 aa5.63□□□□□ -1.51
LIMA1-202ENST00000394943 ZNF736B4DX44 427 aaPredicted RBP5.63□□□□□ -1.51
LIMA1-202ENST00000394943 CT45A6P0DMU7 189 aa5.63□□□□□ -1.51
LIMA1-202ENST00000394943 CT45A5P0DMU8 189 aa5.63□□□□□ -1.51
LIMA1-202ENST00000394943 CT45A7P0DMV0 189 aa5.63□□□□□ -1.51
LIMA1-202ENST00000394943 IL3RAP26951 378 aa5.63□□□□□ -1.51
LIMA1-202ENST00000394943 KIR2DS2P43631 304 aa5.63□□□□□ -1.51
LIMA1-202ENST00000394943 LRRC75BQ2VPJ9 315 aa5.63□□□□□ -1.51
LIMA1-202ENST00000394943 CHRFAM7AQ494W8 412 aa5.63□□□□□ -1.51
LIMA1-202ENST00000394943 PVRIGQ6DKI7 326 aa5.63□□□□□ -1.51
LIMA1-202ENST00000394943 DHRS7BQ6IAN0 325 aaPredicted RBP5.63□□□□□ -1.51
LIMA1-202ENST00000394943 GVQW1Q8N7I0 195 aa5.63□□□□□ -1.51
LIMA1-202ENST00000394943 LHX4Q969G2 390 aa5.63□□□□□ -1.51
LIMA1-202ENST00000394943 RBM14Q96PK6 669 aaKnown RBP5.63□□□□□ -1.51
LIMA1-202ENST00000394943 ALX4Q9H161 411 aaPredicted RBP5.63□□□□□ -1.51
LIMA1-202ENST00000394943 ESM1Q9NQ30 184 aa5.63□□□□□ -1.51
LIMA1-202ENST00000394943 RDH8Q9NYR8 311 aa5.63□□□□□ -1.51
LIMA1-202ENST00000394943 TCF19Q9Y242 345 aa5.63□□□□□ -1.51
LIMA1-202ENST00000394943 SETXQ7Z333 2677 aaKnown RBP5.63□□□□□ -1.51
LIMA1-202ENST00000394943 TRAV40A0A0B4J280 105 aa5.62□□□□□ -1.51
LIMA1-202ENST00000394943 A0A0U1RQK1 487 aa5.62□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms