RNA–Protein interactions for RNA: ENST00000392004.7

COL6A3-205, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 4,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-205ENST00000392004 SVIPQ8NHG7 77 aa8.75□□□□□ -1.01
COL6A3-205ENST00000392004 TAF9BQ9HBM6 251 aa8.75□□□□□ -1.01
COL6A3-205ENST00000392004 MIOXQ9UGB7 285 aa8.75□□□□□ -1.01
COL6A3-205ENST00000392004 TMEM30CPA0ZSE6 113 aa8.75□□□□□ -1.01
COL6A3-205ENST00000392004 C17orf100A8MU93 164 aa8.75□□□□□ -1.01
COL6A3-205ENST00000392004 IGHMP01871 453 aa8.75□□□□□ -1.01
COL6A3-205ENST00000392004 PET100P0DJ07 73 aa8.75□□□□□ -1.01
COL6A3-205ENST00000392004 ZNF133P52736 654 aaPredicted RBP8.75□□□□□ -1.01
COL6A3-205ENST00000392004 ADORA2A-AS1P86434 159 aa8.75□□□□□ -1.01
COL6A3-205ENST00000392004 HGFACQ04756 655 aa8.75□□□□□ -1.01
COL6A3-205ENST00000392004 FHL1Q13642 323 aa8.75□□□□□ -1.01
COL6A3-205ENST00000392004 ZNF525Q8N782 197 aa8.75□□□□□ -1.01
COL6A3-205ENST00000392004 WDR31Q8NA23 367 aa8.75□□□□□ -1.01
COL6A3-205ENST00000392004 MRPL24Q96A35 216 aaKnown RBP8.75□□□□□ -1.01
COL6A3-205ENST00000392004 RPEQ96AT9 228 aa8.75□□□□□ -1.01
COL6A3-205ENST00000392004 POM121Q96HA1 1249 aa8.75□□□□□ -1.01
COL6A3-205ENST00000392004 MEGF10Q96KG7 1140 aa8.75□□□□□ -1.01
COL6A3-205ENST00000392004 ZNF107Q9UII5 783 aaPredicted RBP8.75□□□□□ -1.01
COL6A3-205ENST00000392004 PDCD6O75340 191 aa8.74□□□□□ -1.01
COL6A3-205ENST00000392004 SNRNP70P08621 437 aaKnown RBP8.74□□□□□ -1.01
COL6A3-205ENST00000392004 CEBPGP53567 150 aa8.74□□□□□ -1.01
COL6A3-205ENST00000392004 SRSF4Q08170 494 aaKnown RBP8.74□□□□□ -1.01
COL6A3-205ENST00000392004 FABP9Q0Z7S8 132 aa8.74□□□□□ -1.01
COL6A3-205ENST00000392004 LPAR3Q9UBY5 353 aa8.74□□□□□ -1.01
COL6A3-205ENST00000392004 A0A0U1RQV5 110 aa8.74□□□□□ -1.01
COL6A3-205ENST00000392004 RAB2AP61019 212 aa8.74□□□□□ -1.01
COL6A3-205ENST00000392004 SAT2Q96F10 170 aaPredicted RBP8.74□□□□□ -1.01
COL6A3-205ENST00000392004 TMEM106BQ9NUM4 274 aa8.74□□□□□ -1.01
COL6A3-205ENST00000392004 RCC2Q9P258 522 aaKnown RBP8.74□□□□□ -1.01
COL6A3-205ENST00000392004 KIR2DS1A0A191URI9 304 aa8.74□□□□□ -1.01
COL6A3-205ENST00000392004 NPIPB13A6NJU9 1138 aa8.74□□□□□ -1.01
COL6A3-205ENST00000392004 NPIPB4C9JG80 1138 aa8.74□□□□□ -1.01
COL6A3-205ENST00000392004 E7EQL1 145 aa8.74□□□□□ -1.01
COL6A3-205ENST00000392004 MUC1P15941 1255 aaPredicted RBP8.74□□□□□ -1.01
COL6A3-205ENST00000392004 KIR2DS4P43632 304 aa8.74□□□□□ -1.01
COL6A3-205ENST00000392004 KIR2DS1Q14954 304 aa8.74□□□□□ -1.01
COL6A3-205ENST00000392004 HMGN3Q15651 99 aa8.74□□□□□ -1.01
COL6A3-205ENST00000392004 ZNF600Q6ZNG1 722 aa8.74□□□□□ -1.01
COL6A3-205ENST00000392004 RNF144BQ7Z419 303 aa8.74□□□□□ -1.01
COL6A3-205ENST00000392004 FAM219AQ8IW50 185 aa8.74□□□□□ -1.01
COL6A3-205ENST00000392004 OR13C8Q8NGS7 320 aa8.74□□□□□ -1.01
COL6A3-205ENST00000392004 MARCH1Q8TCQ1 289 aa8.74□□□□□ -1.01
COL6A3-205ENST00000392004 HS3ST6Q96QI5 342 aa8.74□□□□□ -1.01
COL6A3-205ENST00000392004 OR51M1Q9H341 326 aa8.74□□□□□ -1.01
COL6A3-205ENST00000392004 ZNF665Q9H7R5 613 aa8.74□□□□□ -1.01
COL6A3-205ENST00000392004 KPTNQ9Y664 436 aa8.74□□□□□ -1.01
COL6A3-205ENST00000392004 hADV38S2A0JD32 116 aa8.73□□□□□ -1.01
COL6A3-205ENST00000392004 CEBPZOSA8MTT3 80 aa8.73□□□□□ -1.01
COL6A3-205ENST00000392004 DUS4LO95620 317 aaKnown RBP8.73□□□□□ -1.01
COL6A3-205ENST00000392004 KRASP01116 189 aa8.73□□□□□ -1.01
COL6A3-205ENST00000392004 CD74P04233 296 aa8.73□□□□□ -1.01
COL6A3-205ENST00000392004 CEACAM8P31997 349 aaPredicted RBP8.73□□□□□ -1.01
COL6A3-205ENST00000392004 PPP1CCP36873 323 aaKnown RBP8.73□□□□□ -1.01
COL6A3-205ENST00000392004 AKR1C3P42330 323 aa8.73□□□□□ -1.01
COL6A3-205ENST00000392004 GLIPR1P48060 266 aa8.73□□□□□ -1.01
COL6A3-205ENST00000392004 MOGAT2Q3SYC2 334 aa8.73□□□□□ -1.01
COL6A3-205ENST00000392004 Q3ZCU0 254 aa8.73□□□□□ -1.01
COL6A3-205ENST00000392004 TEX30Q5JUR7 227 aa8.73□□□□□ -1.01
COL6A3-205ENST00000392004 C1orf162Q8NEQ5 155 aaPredicted RBP8.73□□□□□ -1.01
COL6A3-205ENST00000392004 LY6EQ16553 131 aa8.73□□□□□ -1.01
COL6A3-205ENST00000392004 C21orf62-AS1Q17RA5 79 aa8.73□□□□□ -1.01
COL6A3-205ENST00000392004 SUMF2Q8NBJ7 301 aa8.73□□□□□ -1.01
COL6A3-205ENST00000392004 OR4A4PQ8NGN8 299 aa8.73□□□□□ -1.01
COL6A3-205ENST00000392004 LOC400499M0QZD8 3231 aa8.73□□□□□ -1.01
COL6A3-205ENST00000392004 HAX1O00165 279 aa8.73□□□□□ -1.01
COL6A3-205ENST00000392004 OR2H2O95918 312 aa8.73□□□□□ -1.01
COL6A3-205ENST00000392004 MT-ND4LP03901 98 aa8.73□□□□□ -1.01
COL6A3-205ENST00000392004 MMP7P09237 267 aaPredicted RBP8.73□□□□□ -1.01
COL6A3-205ENST00000392004 HLA-GP17693 338 aa8.73□□□□□ -1.01
COL6A3-205ENST00000392004 HABP2Q14520 560 aaPredicted RBP8.73□□□□□ -1.01
COL6A3-205ENST00000392004 C10orf91Q5T1B1 145 aa8.73□□□□□ -1.01
COL6A3-205ENST00000392004 UBAC2Q8NBM4 344 aa8.73□□□□□ -1.01
COL6A3-205ENST00000392004 REPIN1Q9BWE0 567 aaKnown RBP8.73□□□□□ -1.01
COL6A3-205ENST00000392004 YAE1D1Q9NRH1 226 aa8.73□□□□□ -1.01
COL6A3-205ENST00000392004 PRR13Q9NZ81 148 aa8.73□□□□□ -1.01
COL6A3-205ENST00000392004 hCG_38984A0A1B0GV85 526 aa8.72□□□□□ -1.01
COL6A3-205ENST00000392004 GATCO43716 136 aaKnown RBP8.72□□□□□ -1.01
COL6A3-205ENST00000392004 TAS2R46P59540 309 aa8.72□□□□□ -1.01
COL6A3-205ENST00000392004 USF2Q15853 346 aaPredicted RBP8.72□□□□□ -1.01
COL6A3-205ENST00000392004 SSX2Q16385 188 aa8.72□□□□□ -1.01
COL6A3-205ENST00000392004 Q8IYB0 196 aa8.72□□□□□ -1.01
COL6A3-205ENST00000392004 PFDN5Q99471 154 aa8.72□□□□□ -1.01
COL6A3-205ENST00000392004 LIME1Q9H400 295 aa8.72□□□□□ -1.01
COL6A3-205ENST00000392004 RAB9BQ9NP90 201 aa8.72□□□□□ -1.01
COL6A3-205ENST00000392004 F8VVB4 439 aa8.72□□□□□ -1.01
COL6A3-205ENST00000392004 F8VWA3 439 aa8.72□□□□□ -1.01
COL6A3-205ENST00000392004 FBXO24O75426 580 aa8.72□□□□□ -1.01
COL6A3-205ENST00000392004 YIF1AO95070 293 aa8.72□□□□□ -1.01
COL6A3-205ENST00000392004 ZNF735P0CB33 412 aa8.72□□□□□ -1.01
COL6A3-205ENST00000392004 HIST1H1DP16402 221 aaKnown RBP8.72□□□□□ -1.01
COL6A3-205ENST00000392004 CD24P25063 80 aa8.72□□□□□ -1.01
COL6A3-205ENST00000392004 PAX6P26367 422 aa8.72□□□□□ -1.01
COL6A3-205ENST00000392004 F2RL1P55085 397 aa8.72□□□□□ -1.01
COL6A3-205ENST00000392004 DLX1P56177 255 aa8.72□□□□□ -1.01
COL6A3-205ENST00000392004 SPINK9Q5DT21 86 aa8.72□□□□□ -1.01
COL6A3-205ENST00000392004 LYZL4Q96KX0 146 aa8.72□□□□□ -1.01
COL6A3-205ENST00000392004 S1PR3Q99500 378 aa8.72□□□□□ -1.01
COL6A3-205ENST00000392004 PIMREGQ9BSJ6 248 aa8.72□□□□□ -1.01
COL6A3-205ENST00000392004 SMIM3Q9BZL3 60 aa8.72□□□□□ -1.01
COL6A3-205ENST00000392004 RYDENQ9NUL5 291 aaKnown RBP8.72□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms