RNA–Protein interactions for RNA: ENST00000377348.6

VPS28-202, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS28, Length 1,097 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-202ENST00000377348 LYG1Q8N1E2 194 aa10.71□□□□□ -0.69
VPS28-202ENST00000377348 C3orf56Q8N813 242 aa10.71□□□□□ -0.69
VPS28-202ENST00000377348 DTX3Q8N9I9 347 aa10.71□□□□□ -0.69
VPS28-202ENST00000377348 NUDCD2Q8WVJ2 157 aa10.71□□□□□ -0.69
VPS28-202ENST00000377348 CFHR4Q92496 578 aa10.71□□□□□ -0.69
VPS28-202ENST00000377348 ST6GALNAC6Q969X2 333 aa10.71□□□□□ -0.69
VPS28-202ENST00000377348 BEX1Q9HBH7 125 aa10.71□□□□□ -0.69
VPS28-202ENST00000377348 RAB18Q9NP72 206 aa10.71□□□□□ -0.69
VPS28-202ENST00000377348 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP10.71□□□□□ -0.69
VPS28-202ENST00000377348 PITPNC1Q9UKF7 332 aa10.71□□□□□ -0.69
VPS28-202ENST00000377348 MGAT4AQ9UM21 535 aa10.71□□□□□ -0.69
VPS28-202ENST00000377348 TRAV18A0A075B6X5 111 aa10.7□□□□□ -0.7
VPS28-202ENST00000377348 IGKV1D-8A0A087WSZ0 117 aa10.7□□□□□ -0.7
VPS28-202ENST00000377348 IGHV1-3A0A0C4DH29 117 aa10.7□□□□□ -0.7
VPS28-202ENST00000377348 CLPSL1A2RUU4 121 aa10.7□□□□□ -0.7
VPS28-202ENST00000377348 FAM90A9PA6NNJ1 464 aa10.7□□□□□ -0.7
VPS28-202ENST00000377348 ST8SIA5O15466 376 aa10.7□□□□□ -0.7
VPS28-202ENST00000377348 FABP7O15540 132 aa10.7□□□□□ -0.7
VPS28-202ENST00000377348 HSPA12AO43301 675 aa10.7□□□□□ -0.7
VPS28-202ENST00000377348 SCGNO76038 276 aa10.7□□□□□ -0.7
VPS28-202ENST00000377348 RGS11O94810 467 aa10.7□□□□□ -0.7
VPS28-202ENST00000377348 GAPDHP04406 335 aaKnown RBP10.7□□□□□ -0.7
VPS28-202ENST00000377348 SNRNP70P08621 437 aaKnown RBP10.7□□□□□ -0.7
VPS28-202ENST00000377348 GSTT2P0CG29 244 aa10.7□□□□□ -0.7
VPS28-202ENST00000377348 GSTT2BP0CG30 244 aa10.7□□□□□ -0.7
VPS28-202ENST00000377348 IL3RAP26951 378 aa10.7□□□□□ -0.7
VPS28-202ENST00000377348 TALDO1P37837 337 aa10.7□□□□□ -0.7
VPS28-202ENST00000377348 CEACAM6P40199 344 aa10.7□□□□□ -0.7
VPS28-202ENST00000377348 STEAP3Q658P3 488 aa10.7□□□□□ -0.7
VPS28-202ENST00000377348 CLVS1Q8IUQ0 354 aaPredicted RBP10.7□□□□□ -0.7
VPS28-202ENST00000377348 ODF3L1Q8IXM7 274 aa10.7□□□□□ -0.7
VPS28-202ENST00000377348 OR8H3Q8N146 312 aa10.7□□□□□ -0.7
VPS28-202ENST00000377348 RTN4IP1Q8WWV3 396 aaPredicted RBP10.7□□□□□ -0.7
VPS28-202ENST00000377348 IFI27L2Q9H2X8 130 aa10.7□□□□□ -0.7
VPS28-202ENST00000377348 C16orf95Q9H693 158 aa10.7□□□□□ -0.7
VPS28-202ENST00000377348 RNF114Q9Y508 228 aa10.7□□□□□ -0.7
VPS28-202ENST00000377348 MMP24Q9Y5R2 645 aa10.7□□□□□ -0.7
VPS28-202ENST00000377348 POM121CA8CG34 1229 aa10.69□□□□□ -0.7
VPS28-202ENST00000377348 ZNF736B4DX44 427 aaPredicted RBP10.69□□□□□ -0.7
VPS28-202ENST00000377348 HAX1O00165 279 aa10.69□□□□□ -0.7
VPS28-202ENST00000377348 SSX5O60225 188 aa10.69□□□□□ -0.7
VPS28-202ENST00000377348 TMEM127O75204 238 aa10.69□□□□□ -0.7
VPS28-202ENST00000377348 IGKV1D-33P01593 117 aa10.69□□□□□ -0.7
VPS28-202ENST00000377348 IGKV1-33P01594 117 aa10.69□□□□□ -0.7
VPS28-202ENST00000377348 GSTP1P09211 210 aaKnown RBP10.69□□□□□ -0.7
VPS28-202ENST00000377348 PTHLHP12272 177 aa10.69□□□□□ -0.7
VPS28-202ENST00000377348 OR3A3P47888 321 aa10.69□□□□□ -0.7
VPS28-202ENST00000377348 ZNF137PP52743 207 aa10.69□□□□□ -0.7
VPS28-202ENST00000377348 BLCAPP62952 87 aa10.69□□□□□ -0.7
VPS28-202ENST00000377348 SRSF4Q08170 494 aaKnown RBP10.69□□□□□ -0.7
VPS28-202ENST00000377348 HES1Q14469 280 aa10.69□□□□□ -0.7
VPS28-202ENST00000377348 HABP2Q14520 560 aaPredicted RBP10.69□□□□□ -0.7
VPS28-202ENST00000377348 HNF4GQ14541 408 aa10.69□□□□□ -0.7
VPS28-202ENST00000377348 ARL6IP1Q15041 203 aa10.69□□□□□ -0.7
VPS28-202ENST00000377348 IGSF11Q5DX21 431 aa10.69□□□□□ -0.7
VPS28-202ENST00000377348 UBE2NLQ5JXB2 153 aa10.69□□□□□ -0.7
VPS28-202ENST00000377348 Q6ZS46 218 aa10.69□□□□□ -0.7
VPS28-202ENST00000377348 TGIF2LXQ8IUE1 241 aa10.69□□□□□ -0.7
VPS28-202ENST00000377348 SAMD12Q8N8I0 201 aa10.69□□□□□ -0.7
VPS28-202ENST00000377348 OR2AK2Q8NG84 335 aa10.69□□□□□ -0.7
VPS28-202ENST00000377348 OR4C13Q8NGP0 309 aa10.69□□□□□ -0.7
VPS28-202ENST00000377348 PHF21AQ96BD5 680 aa10.69□□□□□ -0.7
VPS28-202ENST00000377348 SLC25A33Q9BSK2 321 aa10.69□□□□□ -0.7
VPS28-202ENST00000377348 NPFFR1Q9GZQ6 430 aa10.69□□□□□ -0.7
VPS28-202ENST00000377348 DCSTAMPQ9H295 470 aa10.69□□□□□ -0.7
VPS28-202ENST00000377348 COMMD3Q9UBI1 195 aa10.69□□□□□ -0.7
VPS28-202ENST00000377348 SAA2-SAA4A0A096LPE2 208 aa10.68□□□□□ -0.7
VPS28-202ENST00000377348 A0A1B0GUS0 222 aa10.68□□□□□ -0.7
VPS28-202ENST00000377348 SH2D7A6NKC9 451 aaPredicted RBP10.68□□□□□ -0.7
VPS28-202ENST00000377348 BET1O15155 118 aa10.68□□□□□ -0.7
VPS28-202ENST00000377348 FAM106CPP0CH98 169 aa10.68□□□□□ -0.7
VPS28-202ENST00000377348 SAA2P0DJI9 122 aaPredicted RBP10.68□□□□□ -0.7
VPS28-202ENST00000377348 ZBTB25P24278 435 aa10.68□□□□□ -0.7
VPS28-202ENST00000377348 KIR2DS4P43632 304 aa10.68□□□□□ -0.7
VPS28-202ENST00000377348 RPL5P46777 297 aaKnown RBP10.68□□□□□ -0.7
VPS28-202ENST00000377348 GNG2P59768 71 aa10.68□□□□□ -0.7
VPS28-202ENST00000377348 KRTAP10-3P60369 221 aa10.68□□□□□ -0.7
VPS28-202ENST00000377348 KIR2DS1Q14954 304 aa10.68□□□□□ -0.7
VPS28-202ENST00000377348 LY6G6FQ5SQ64 297 aa10.68□□□□□ -0.7
VPS28-202ENST00000377348 THNSL2Q86YJ6 484 aa10.68□□□□□ -0.7
VPS28-202ENST00000377348 OR4A4PQ8NGN8 299 aa10.68□□□□□ -0.7
VPS28-202ENST00000377348 ABHD14BQ96IU4 210 aa10.68□□□□□ -0.7
VPS28-202ENST00000377348 RBM14Q96PK6 669 aaKnown RBP10.68□□□□□ -0.7
VPS28-202ENST00000377348 CABLES2Q9BTV7 478 aa10.68□□□□□ -0.7
VPS28-202ENST00000377348 ZNF747Q9BV97 191 aa10.68□□□□□ -0.7
VPS28-202ENST00000377348 ST6GALNAC5Q9BVH7 336 aa10.68□□□□□ -0.7
VPS28-202ENST00000377348 ABCG5Q9H222 651 aa10.68□□□□□ -0.7
VPS28-202ENST00000377348 ZNF702PQ9H963 129 aa10.68□□□□□ -0.7
VPS28-202ENST00000377348 DIABLOQ9NR28 239 aa10.68□□□□□ -0.7
VPS28-202ENST00000377348 TRRAPQ9Y4A5 3859 aa10.67□□□□□ -0.7
VPS28-202ENST00000377348 LANCL1O43813 399 aa10.67□□□□□ -0.7
VPS28-202ENST00000377348 OR2F2O95006 317 aa10.67□□□□□ -0.7
VPS28-202ENST00000377348 EIF4EP06730 217 aaKnown RBP10.67□□□□□ -0.7
VPS28-202ENST00000377348 TMEM11P17152 192 aa10.67□□□□□ -0.7
VPS28-202ENST00000377348 DTYMKP23919 212 aa10.67□□□□□ -0.7
VPS28-202ENST00000377348 RORCP51449 518 aa10.67□□□□□ -0.7
VPS28-202ENST00000377348 PROK1P58294 105 aa10.67□□□□□ -0.7
VPS28-202ENST00000377348 SPCS2Q15005 226 aa10.67□□□□□ -0.7
VPS28-202ENST00000377348 PNLIPRP3Q17RR3 467 aa10.67□□□□□ -0.7
VPS28-202ENST00000377348 RPL39P5Q59GN2 51 aa10.67□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 48.2 ms