RNA–Protein interactions for RNA: ENST00000347401.7

COL6A3-202, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,625 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-202ENST00000347401 SKP2Q13309 424 aa11.7□□□□□ -0.54
COL6A3-202ENST00000347401 PPP1R3EQ9H7J1 279 aa11.7□□□□□ -0.54
COL6A3-202ENST00000347401 TICRRQ7Z2Z1 1910 aa11.7□□□□□ -0.54
COL6A3-202ENST00000347401 ARHGAP21Q5T5U3 1957 aa11.7□□□□□ -0.54
COL6A3-202ENST00000347401 OR4C45A6NMZ5 311 aa11.7□□□□□ -0.54
COL6A3-202ENST00000347401 RECKO95980 971 aa11.7□□□□□ -0.54
COL6A3-202ENST00000347401 AGAP20933 346 aa11.7□□□□□ -0.54
COL6A3-202ENST00000347401 RNF186Q9NXI6 227 aa11.7□□□□□ -0.54
COL6A3-202ENST00000347401 FRRS1LQ9P0K9 344 aa11.7□□□□□ -0.54
COL6A3-202ENST00000347401 CLDN16Q9Y5I7 305 aa11.7□□□□□ -0.54
COL6A3-202ENST00000347401 PLA2G10O15496 165 aa11.7□□□□□ -0.54
COL6A3-202ENST00000347401 SYNGR1O43759 233 aa11.7□□□□□ -0.54
COL6A3-202ENST00000347401 ATP6V0CP27449 155 aa11.7□□□□□ -0.54
COL6A3-202ENST00000347401 UBALD2Q8IYN6 164 aa11.7□□□□□ -0.54
COL6A3-202ENST00000347401 OR13H1Q8NG92 308 aa11.7□□□□□ -0.54
COL6A3-202ENST00000347401 CA5BP1Q8WTZ4 195 aa11.7□□□□□ -0.54
COL6A3-202ENST00000347401 SAMD13Q5VXD3 122 aa11.7□□□□□ -0.54
COL6A3-202ENST00000347401 HSF4Q9ULV5 492 aa11.7□□□□□ -0.54
COL6A3-202ENST00000347401 PLCE1Q9P212 2302 aa11.69□□□□□ -0.54
COL6A3-202ENST00000347401 DANCRP0C864 163 aa11.69□□□□□ -0.54
COL6A3-202ENST00000347401 CKS2P33552 79 aa11.69□□□□□ -0.54
COL6A3-202ENST00000347401 FOXF1Q12946 379 aa11.69□□□□□ -0.54
COL6A3-202ENST00000347401 RBKSQ9H477 322 aa11.69□□□□□ -0.54
COL6A3-202ENST00000347401 COL18A1P39060 1754 aa11.69□□□□□ -0.54
COL6A3-202ENST00000347401 SLC25A17O43808 307 aa11.69□□□□□ -0.54
COL6A3-202ENST00000347401 MPLP40238 635 aa11.69□□□□□ -0.54
COL6A3-202ENST00000347401 LYZP61626 148 aa11.69□□□□□ -0.54
COL6A3-202ENST00000347401 MRPL58Q14197 206 aaKnown RBP11.69□□□□□ -0.54
COL6A3-202ENST00000347401 Q6AWC8 147 aa11.69□□□□□ -0.54
COL6A3-202ENST00000347401 ZNF296Q8WUU4 475 aaPredicted RBP11.69□□□□□ -0.54
COL6A3-202ENST00000347401 PAXXQ9BUH6 204 aa11.69□□□□□ -0.54
COL6A3-202ENST00000347401 SCNM1Q9BWG6 230 aa11.69□□□□□ -0.54
COL6A3-202ENST00000347401 TNCP24821 2201 aa11.69□□□□□ -0.54
COL6A3-202ENST00000347401 TRAV17A0A0B4J275 112 aa11.69□□□□□ -0.54
COL6A3-202ENST00000347401 IFNL4K9M1U5 179 aa11.69□□□□□ -0.54
COL6A3-202ENST00000347401 ZNF250P15622 560 aa11.69□□□□□ -0.54
COL6A3-202ENST00000347401 RARRES2Q99969 163 aa11.69□□□□□ -0.54
COL6A3-202ENST00000347401 PLXNB3Q9ULL4 1909 aa11.69□□□□□ -0.54
COL6A3-202ENST00000347401 B4E171 279 aa11.69□□□□□ -0.54
COL6A3-202ENST00000347401 GUCA2BQ16661 112 aa11.69□□□□□ -0.54
COL6A3-202ENST00000347401 KLHDC9Q8NEP7 349 aa11.69□□□□□ -0.54
COL6A3-202ENST00000347401 OR8B12Q8NGG6 310 aa11.69□□□□□ -0.54
COL6A3-202ENST00000347401 QTRT1Q9BXR0 403 aaKnown RBP11.69□□□□□ -0.54
COL6A3-202ENST00000347401 RAXQ9Y2V3 346 aa11.69□□□□□ -0.54
COL6A3-202ENST00000347401 PRR14LQ5THK1 2151 aa11.69□□□□□ -0.54
COL6A3-202ENST00000347401 ZSWIM8A7E2V4 1837 aa11.69□□□□□ -0.54
COL6A3-202ENST00000347401 HPRT1P00492 218 aa11.69□□□□□ -0.54
COL6A3-202ENST00000347401 NKG7Q16617 165 aa11.69□□□□□ -0.54
COL6A3-202ENST00000347401 MSRB3Q8IXL7 192 aa11.69□□□□□ -0.54
COL6A3-202ENST00000347401 FADS6Q8N9I5 356 aa11.69□□□□□ -0.54
COL6A3-202ENST00000347401 SPANXN1Q5VSR9 72 aa11.69□□□□□ -0.54
COL6A3-202ENST00000347401 SPAG8Q99932 426 aaPredicted RBP11.69□□□□□ -0.54
COL6A3-202ENST00000347401 MRPL32Q9BYC8 188 aaKnown RBP11.69□□□□□ -0.54
COL6A3-202ENST00000347401 PTP4A3O75365 173 aa11.69□□□□□ -0.54
COL6A3-202ENST00000347401 CD8AP01732 235 aa11.69□□□□□ -0.54
COL6A3-202ENST00000347401 SFTPA2Q8IWL1 248 aa11.69□□□□□ -0.54
COL6A3-202ENST00000347401 SFTPA1Q8IWL2 248 aa11.69□□□□□ -0.54
COL6A3-202ENST00000347401 TMEM222Q9H0R3 208 aa11.69□□□□□ -0.54
COL6A3-202ENST00000347401 SLC26A1Q9H2B4 701 aa11.69□□□□□ -0.54
COL6A3-202ENST00000347401 TNFRSF12AQ9NP84 129 aa11.69□□□□□ -0.54
COL6A3-202ENST00000347401 TM4SF4P48230 202 aa11.68□□□□□ -0.54
COL6A3-202ENST00000347401 SPNS3Q6ZMD2 512 aa11.68□□□□□ -0.54
COL6A3-202ENST00000347401 ZNF665Q9H7R5 613 aa11.68□□□□□ -0.54
COL6A3-202ENST00000347401 MSL2Q9HCI7 577 aa11.68□□□□□ -0.54
COL6A3-202ENST00000347401 JKAMPQ9P055 326 aa11.68□□□□□ -0.54
COL6A3-202ENST00000347401 ZNF79Q15937 498 aa11.68□□□□□ -0.54
COL6A3-202ENST00000347401 PPP1CCP36873 323 aaKnown RBP11.68□□□□□ -0.54
COL6A3-202ENST00000347401 LTBP4Q8N2S1 1624 aa11.68□□□□□ -0.54
COL6A3-202ENST00000347401 MKRN2OSH3BPM6 223 aa11.68□□□□□ -0.54
COL6A3-202ENST00000347401 UBE2L6O14933 153 aa11.68□□□□□ -0.54
COL6A3-202ENST00000347401 RNF133Q8WVZ7 376 aa11.68□□□□□ -0.54
COL6A3-202ENST00000347401 MRPL24Q96A35 216 aaKnown RBP11.68□□□□□ -0.54
COL6A3-202ENST00000347401 FLYWCH2Q96CP2 140 aaKnown RBP11.68□□□□□ -0.54
COL6A3-202ENST00000347401 A0A1W2PQM1 296 aa11.68□□□□□ -0.54
COL6A3-202ENST00000347401 IGHV3-9P01782 118 aa11.68□□□□□ -0.54
COL6A3-202ENST00000347401 ZNF880Q6PDB4 577 aa11.68□□□□□ -0.54
COL6A3-202ENST00000347401 LILRA3Q8N6C8 439 aaPredicted RBP11.68□□□□□ -0.54
COL6A3-202ENST00000347401 PAGE4O60829 102 aa11.68□□□□□ -0.54
COL6A3-202ENST00000347401 RELQ04864 619 aaPredicted RBP11.68□□□□□ -0.54
COL6A3-202ENST00000347401 C19orf54Q5BKX5 351 aa11.68□□□□□ -0.54
COL6A3-202ENST00000347401 ONECUT1Q9UBC0 465 aa11.68□□□□□ -0.54
COL6A3-202ENST00000347401 HIGD1AQ9Y241 93 aa11.67□□□□□ -0.54
COL6A3-202ENST00000347401 CARHSP1Q9Y2V2 147 aaKnown RBP11.67□□□□□ -0.54
COL6A3-202ENST00000347401 FFAR1O14842 300 aa11.67□□□□□ -0.54
COL6A3-202ENST00000347401 CTLA4P16410 223 aa11.67□□□□□ -0.54
COL6A3-202ENST00000347401 LRRC75BQ2VPJ9 315 aa11.67□□□□□ -0.54
COL6A3-202ENST00000347401 HIKESHIQ53FT3 197 aa11.67□□□□□ -0.54
COL6A3-202ENST00000347401 TEX29Q8N6K0 151 aa11.67□□□□□ -0.54
COL6A3-202ENST00000347401 CADM4Q8NFZ8 388 aa11.67□□□□□ -0.54
COL6A3-202ENST00000347401 EIF3GO75821 320 aaKnown RBP eCLIP11.67□□□□□ -0.54
COL6A3-202ENST00000347401 TRGC2P03986 189 aa11.67□□□□□ -0.54
COL6A3-202ENST00000347401 PSG9Q00887 426 aa11.67□□□□□ -0.54
COL6A3-202ENST00000347401 ATOH1Q92858 354 aaPredicted RBP11.67□□□□□ -0.54
COL6A3-202ENST00000347401 LINC01549A6NIU2 74 aa11.67□□□□□ -0.54
COL6A3-202ENST00000347401 ZNF660Q6AZW8 331 aaPredicted RBP11.67□□□□□ -0.54
COL6A3-202ENST00000347401 RFLNAQ6ZTI6 216 aa11.67□□□□□ -0.54
COL6A3-202ENST00000347401 GAPTQ8N292 157 aa11.67□□□□□ -0.54
COL6A3-202ENST00000347401 TRGV5A0A0B4J1U4 118 aa11.67□□□□□ -0.54
COL6A3-202ENST00000347401 ZNF729A6NN14 1252 aaPredicted RBP11.67□□□□□ -0.54
COL6A3-202ENST00000347401 CDX4O14627 284 aaPredicted RBP11.67□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 49.3 ms