RNA–Protein interactions for RNA: ENST00000343916.7

COL9A3-201, Transcript of collagen type IX alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A3, Length 2,485 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-201ENST00000343916 SARAFQ96BY9 339 aa16.31■□□□□ 0.2
COL9A3-201ENST00000343916 EGLN1Q9GZT9 426 aa16.31■□□□□ 0.2
COL9A3-201ENST00000343916 OPN3Q9H1Y3 402 aaPredicted RBP16.31■□□□□ 0.2
COL9A3-201ENST00000343916 A0A1W2PPH5 198 aa16.3■□□□□ 0.2
COL9A3-201ENST00000343916 C7orf77A4D0Y5 90 aa16.3■□□□□ 0.2
COL9A3-201ENST00000343916 KIAA1324LA8MWY0 1029 aaPredicted RBP16.3■□□□□ 0.2
COL9A3-201ENST00000343916 LMO1P25800 156 aa16.3■□□□□ 0.2
COL9A3-201ENST00000343916 AESQ08117 197 aa16.3■□□□□ 0.2
COL9A3-201ENST00000343916 TMEM267Q0VDI3 215 aaPredicted RBP16.3■□□□□ 0.2
COL9A3-201ENST00000343916 Q6ZR03 302 aa16.3■□□□□ 0.2
COL9A3-201ENST00000343916 OR1L1Q8NH94 360 aa16.3■□□□□ 0.2
COL9A3-201ENST00000343916 RNF150Q9ULK6 438 aa16.3■□□□□ 0.2
COL9A3-201ENST00000343916 WIPI2Q9Y4P8 454 aa16.3■□□□□ 0.2
COL9A3-201ENST00000343916 TIMM8AO60220 97 aaPredicted RBP16.3■□□□□ 0.2
COL9A3-201ENST00000343916 IGKV1-5P01602 117 aa16.3■□□□□ 0.2
COL9A3-201ENST00000343916 CCL20P78556 96 aa16.3■□□□□ 0.2
COL9A3-201ENST00000343916 HMGN3Q15651 99 aa16.3■□□□□ 0.2
COL9A3-201ENST00000343916 ACSF3Q4G176 576 aaPredicted RBP16.3■□□□□ 0.2
COL9A3-201ENST00000343916 ZNF585BQ52M93 769 aa16.3■□□□□ 0.2
COL9A3-201ENST00000343916 ALKBH2Q6NS38 261 aa16.3■□□□□ 0.2
COL9A3-201ENST00000343916 DRAM1Q8N682 238 aa16.3■□□□□ 0.2
COL9A3-201ENST00000343916 ZNF610Q8N9Z0 462 aa16.3■□□□□ 0.2
COL9A3-201ENST00000343916 BCL2L14Q9BZR8 327 aa16.3■□□□□ 0.2
COL9A3-201ENST00000343916 HES4Q9HCC6 221 aa16.3■□□□□ 0.2
COL9A3-201ENST00000343916 CADP27708 2225 aa16.3■□□□□ 0.2
COL9A3-201ENST00000343916 RIF1Q5UIP0 2472 aaKnown RBP16.29■□□□□ 0.2
COL9A3-201ENST00000343916 A0A1B0GU03 582 aa16.29■□□□□ 0.2
COL9A3-201ENST00000343916 hCG_1809904A0A1W2PP81 198 aa16.29■□□□□ 0.2
COL9A3-201ENST00000343916 A0A1W2PR64 198 aa16.29■□□□□ 0.2
COL9A3-201ENST00000343916 A0A1W2PRV1 198 aa16.29■□□□□ 0.2
COL9A3-201ENST00000343916 TMEM210A6NLX4 147 aa16.29■□□□□ 0.2
COL9A3-201ENST00000343916 OR3A1P47881 315 aa16.29■□□□□ 0.2
COL9A3-201ENST00000343916 RARRES2Q99969 163 aa16.29■□□□□ 0.2
COL9A3-201ENST00000343916 DKK4Q9UBT3 224 aa16.29■□□□□ 0.2
COL9A3-201ENST00000343916 IAPPP10997 89 aa16.29■□□□□ 0.2
COL9A3-201ENST00000343916 PAX6P26367 422 aa16.29■□□□□ 0.2
COL9A3-201ENST00000343916 USF3Q68DE3 2245 aa16.29■□□□□ 0.2
COL9A3-201ENST00000343916 COMMD1Q8N668 190 aa16.29■□□□□ 0.2
COL9A3-201ENST00000343916 TPRX1Q8N7U7 411 aa16.29■□□□□ 0.2
COL9A3-201ENST00000343916 BAXQ07812 192 aa16.28■□□□□ 0.2
COL9A3-201ENST00000343916 FABP9Q0Z7S8 132 aa16.28■□□□□ 0.2
COL9A3-201ENST00000343916 UBE2CO00762 179 aa16.28■□□□□ 0.2
COL9A3-201ENST00000343916 TNFSF13O75888 250 aa16.28■□□□□ 0.2
COL9A3-201ENST00000343916 MT-ND4LP03901 98 aa16.28■□□□□ 0.2
COL9A3-201ENST00000343916 S100A9P06702 114 aaKnown RBP16.28■□□□□ 0.2
COL9A3-201ENST00000343916 FABP1P07148 127 aa16.28■□□□□ 0.2
COL9A3-201ENST00000343916 MMP9P14780 707 aa16.28■□□□□ 0.2
COL9A3-201ENST00000343916 METRNQ9UJH8 293 aa16.28■□□□□ 0.2
COL9A3-201ENST00000343916 C12orf77C9JDV5 145 aa16.27■□□□□ 0.2
COL9A3-201ENST00000343916 PTBP3O95758 552 aaKnown RBP16.27■□□□□ 0.2
COL9A3-201ENST00000343916 ARG1P05089 322 aa16.27■□□□□ 0.2
COL9A3-201ENST00000343916 SMIM6P0DI80 62 aa16.27■□□□□ 0.2
COL9A3-201ENST00000343916 FIP1L1Q6UN15 594 aaKnown RBP16.27■□□□□ 0.2
COL9A3-201ENST00000343916 WDR82Q6UXN9 313 aa16.27■□□□□ 0.2
COL9A3-201ENST00000343916 OR52L2PQ8NGH6 319 aa16.27■□□□□ 0.2
COL9A3-201ENST00000343916 NIT2Q9NQR4 276 aa16.27■□□□□ 0.2
COL9A3-201ENST00000343916 OR13C7P0DN81 318 aa16.27■□□□□ 0.19
COL9A3-201ENST00000343916 OR2B11Q5JQS5 317 aa16.27■□□□□ 0.19
COL9A3-201ENST00000343916 STX12Q86Y82 276 aa16.27■□□□□ 0.19
COL9A3-201ENST00000343916 ATP5SQ99766 215 aa16.27■□□□□ 0.19
COL9A3-201ENST00000343916 PLSCR4Q9NRQ2 329 aa16.27■□□□□ 0.19
COL9A3-201ENST00000343916 LIN7CQ9NUP9 197 aaKnown RBP16.27■□□□□ 0.19
COL9A3-201ENST00000343916 ZNF292O60281 2723 aa16.27■□□□□ 0.19
COL9A3-201ENST00000343916 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP16.26■□□□□ 0.19
COL9A3-201ENST00000343916 TMEM30CPA0ZSE6 113 aa16.26■□□□□ 0.19
COL9A3-201ENST00000343916 TXNL1O43396 289 aa16.26■□□□□ 0.19
COL9A3-201ENST00000343916 AGAP20933 346 aa16.26■□□□□ 0.19
COL9A3-201ENST00000343916 GABRA2P47869 451 aa16.26■□□□□ 0.19
COL9A3-201ENST00000343916 ACP7Q6ZNF0 438 aa16.26■□□□□ 0.19
COL9A3-201ENST00000343916 ZNF561Q8N587 486 aa16.26■□□□□ 0.19
COL9A3-201ENST00000343916 FAM24BQ8N5W8 94 aa16.26■□□□□ 0.19
COL9A3-201ENST00000343916 MRGPRDQ8TDS7 321 aa16.26■□□□□ 0.19
COL9A3-201ENST00000343916 GALMQ96C23 342 aa16.26■□□□□ 0.19
COL9A3-201ENST00000343916 STARD4Q96DR4 205 aa16.26■□□□□ 0.19
COL9A3-201ENST00000343916 COQ2Q96H96 371 aa16.26■□□□□ 0.19
COL9A3-201ENST00000343916 OR2D2Q9H210 308 aa16.26■□□□□ 0.19
COL9A3-201ENST00000343916 CXXC4Q9H2H0 198 aa16.26■□□□□ 0.19
COL9A3-201ENST00000343916 KCNIP1Q9NZI2 227 aa16.26■□□□□ 0.19
COL9A3-201ENST00000343916 MAP1BP46821 2468 aaKnown RBP16.26■□□□□ 0.19
COL9A3-201ENST00000343916 RP1L1Q8IWN7 2480 aaPredicted RBP16.26■□□□□ 0.19
COL9A3-201ENST00000343916 CHD3Q12873 2000 aaKnown RBP16.26■□□□□ 0.19
COL9A3-201ENST00000343916 IGHV1-18A0A0C4DH31 117 aa16.26■□□□□ 0.19
COL9A3-201ENST00000343916 C1QTNF9BB2RNN3 333 aa16.26■□□□□ 0.19
COL9A3-201ENST00000343916 RAMP3O60896 148 aa16.26■□□□□ 0.19
COL9A3-201ENST00000343916 SLC25A6P12236 298 aa16.26■□□□□ 0.19
COL9A3-201ENST00000343916 OR2B8PP59922 312 aa16.26■□□□□ 0.19
COL9A3-201ENST00000343916 RPL23AP62750 156 aaKnown RBP16.26■□□□□ 0.19
COL9A3-201ENST00000343916 RNF212Q495C1 297 aa16.26■□□□□ 0.19
COL9A3-201ENST00000343916 SPSB3Q6PJ21 355 aa16.26■□□□□ 0.19
COL9A3-201ENST00000343916 SEM1Q6ZVN7 128 aa16.26■□□□□ 0.19
COL9A3-201ENST00000343916 ZNF808Q8N4W9 903 aaPredicted RBP16.26■□□□□ 0.19
COL9A3-201ENST00000343916 C1orf162Q8NEQ5 155 aaPredicted RBP16.26■□□□□ 0.19
COL9A3-201ENST00000343916 CD300LFQ8TDQ1 290 aa16.26■□□□□ 0.19
COL9A3-201ENST00000343916 LSM10Q969L4 123 aaKnown RBP16.26■□□□□ 0.19
COL9A3-201ENST00000343916 GSN-AS1Q9NRJ2 163 aa16.26■□□□□ 0.19
COL9A3-201ENST00000343916 IGHV2OR16-5A0A0B4J2B6 119 aa16.25■□□□□ 0.19
COL9A3-201ENST00000343916 A0A1W2PPE2 198 aa16.25■□□□□ 0.19
COL9A3-201ENST00000343916 UMAD1C9J7I0 102 aa16.25■□□□□ 0.19
COL9A3-201ENST00000343916 SYNGR2O43760 224 aa16.25■□□□□ 0.19
COL9A3-201ENST00000343916 S100A8P05109 93 aa16.25■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms