RNA–Protein interactions for RNA: ENST00000339859.8

USP54-201, Transcript of ubiquitin specific peptidase 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP54, Length 6,247 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-201ENST00000339859 LINC00312Q9Y6C7 94 aa8.62□□□□□ -1.03
USP54-201ENST00000339859 PF4P02776 101 aa8.62□□□□□ -1.03
USP54-201ENST00000339859 MGST1P10620 155 aaKnown RBP8.62□□□□□ -1.03
USP54-201ENST00000339859 HTR2BP41595 481 aa8.62□□□□□ -1.03
USP54-201ENST00000339859 LYZP61626 148 aa8.62□□□□□ -1.03
USP54-201ENST00000339859 PXDC1Q5TGL8 231 aa8.62□□□□□ -1.03
USP54-201ENST00000339859 OR4C13Q8NGP0 309 aa8.62□□□□□ -1.03
USP54-201ENST00000339859 ST8SIA2Q92186 375 aa8.62□□□□□ -1.03
USP54-201ENST00000339859 MDFIC2A0A1B0GVS7 189 aa8.62□□□□□ -1.03
USP54-201ENST00000339859 AGAP20933 346 aa8.62□□□□□ -1.03
USP54-201ENST00000339859 UNQ5815/PRO19632Q6UWF5 114 aa8.62□□□□□ -1.03
USP54-201ENST00000339859 PRORYQ9H606 182 aa8.62□□□□□ -1.03
USP54-201ENST00000339859 MLXQ9UH92 298 aa8.62□□□□□ -1.03
USP54-201ENST00000339859 FAM122CQ6P4D5 195 aa8.62□□□□□ -1.03
USP54-201ENST00000339859 P2RX4Q99571 388 aa8.62□□□□□ -1.03
USP54-201ENST00000339859 CCDC88CQ9P219 2028 aa8.62□□□□□ -1.03
USP54-201ENST00000339859 OR13C7P0DN81 318 aa8.61□□□□□ -1.03
USP54-201ENST00000339859 ID1P41134 155 aa8.61□□□□□ -1.03
USP54-201ENST00000339859 NPBWR2P48146 333 aa8.61□□□□□ -1.03
USP54-201ENST00000339859 ZNRF1Q8ND25 227 aa8.61□□□□□ -1.03
USP54-201ENST00000339859 SLC2A9Q9NRM0 540 aa8.61□□□□□ -1.03
USP54-201ENST00000339859 A0A1B0GU03 582 aa8.61□□□□□ -1.03
USP54-201ENST00000339859 H2AFB1P0C5Y9 115 aa8.61□□□□□ -1.03
USP54-201ENST00000339859 LOXL3P58215 753 aa8.61□□□□□ -1.03
USP54-201ENST00000339859 UBE2G2P60604 165 aa8.61□□□□□ -1.03
USP54-201ENST00000339859 HMGN3Q15651 99 aa8.61□□□□□ -1.03
USP54-201ENST00000339859 DPM3Q9P2X0 92 aa8.61□□□□□ -1.03
USP54-201ENST00000339859 IGHV3-72A0A0B4J1Y9 119 aa8.61□□□□□ -1.03
USP54-201ENST00000339859 POM121CA8CG34 1229 aa8.61□□□□□ -1.03
USP54-201ENST00000339859 KCNAB3O43448 404 aa8.61□□□□□ -1.03
USP54-201ENST00000339859 PSG2P11465 335 aa8.61□□□□□ -1.03
USP54-201ENST00000339859 ZNF835Q9Y2P0 537 aa8.61□□□□□ -1.03
USP54-201ENST00000339859 XKRY2A2RUG3 117 aa8.61□□□□□ -1.03
USP54-201ENST00000339859 WNT5AP41221 380 aa8.61□□□□□ -1.03
USP54-201ENST00000339859 RAG2P55895 527 aa8.61□□□□□ -1.03
USP54-201ENST00000339859 FAM216BQ8N7L0 139 aa8.61□□□□□ -1.03
USP54-201ENST00000339859 DTD1Q8TEA8 209 aa8.61□□□□□ -1.03
USP54-201ENST00000339859 SFT2D1Q8WV19 159 aa8.61□□□□□ -1.03
USP54-201ENST00000339859 J3QR06 171 aa8.61□□□□□ -1.03
USP54-201ENST00000339859 CORTO00230 105 aa8.61□□□□□ -1.03
USP54-201ENST00000339859 CHST1O43916 411 aa8.61□□□□□ -1.03
USP54-201ENST00000339859 PGA5P0DJD9 388 aa8.61□□□□□ -1.03
USP54-201ENST00000339859 DHRS2Q13268 280 aa8.61□□□□□ -1.03
USP54-201ENST00000339859 TMEM104Q8NE00 496 aa8.61□□□□□ -1.03
USP54-201ENST00000339859 NABP1Q96AH0 204 aa8.61□□□□□ -1.03
USP54-201ENST00000339859 OR51I2Q9H344 312 aa8.61□□□□□ -1.03
USP54-201ENST00000339859 OPN4Q9UHM6 478 aa8.61□□□□□ -1.03
USP54-201ENST00000339859 TIMM8BQ9Y5J9 83 aaPredicted RBP8.61□□□□□ -1.03
USP54-201ENST00000339859 B4DSR2 109 aa8.6□□□□□ -1.03
USP54-201ENST00000339859 SCTP09683 121 aa8.6□□□□□ -1.03
USP54-201ENST00000339859 ABHD14BQ96IU4 210 aa8.6□□□□□ -1.03
USP54-201ENST00000339859 EP400Q96L91 3159 aa8.6□□□□□ -1.03
USP54-201ENST00000339859 COMPP49747 757 aaPredicted RBP8.6□□□□□ -1.03
USP54-201ENST00000339859 MPPED2Q15777 294 aa8.6□□□□□ -1.03
USP54-201ENST00000339859 DRAXINQ8NBI3 349 aaPredicted RBP8.6□□□□□ -1.03
USP54-201ENST00000339859 ZNF436-AS1Q8NC38 126 aaPredicted RBP8.6□□□□□ -1.03
USP54-201ENST00000339859 SLX1AQ9BQ83 275 aa8.6□□□□□ -1.03
USP54-201ENST00000339859 NUP214P35658 2090 aaPredicted RBP8.6□□□□□ -1.03
USP54-201ENST00000339859 HOXD11P31277 338 aaPredicted RBP8.6□□□□□ -1.03
USP54-201ENST00000339859 ATP5G2Q06055 141 aa8.6□□□□□ -1.03
USP54-201ENST00000339859 ZNF260Q3ZCT1 412 aa8.6□□□□□ -1.03
USP54-201ENST00000339859 VAX1Q5SQQ9 334 aa8.6□□□□□ -1.03
USP54-201ENST00000339859 PPP1R1CQ8WVI7 109 aa8.6□□□□□ -1.03
USP54-201ENST00000339859 CLDN16Q9Y5I7 305 aa8.6□□□□□ -1.03
USP54-201ENST00000339859 TRAV20A0A0B4J274 112 aa8.6□□□□□ -1.03
USP54-201ENST00000339859 H0Y980 276 aa8.6□□□□□ -1.03
USP54-201ENST00000339859 H3BP45 60 aa8.6□□□□□ -1.03
USP54-201ENST00000339859 RHBDL1O75783 438 aa8.6□□□□□ -1.03
USP54-201ENST00000339859 TAGLN2P37802 199 aaKnown RBP8.6□□□□□ -1.03
USP54-201ENST00000339859 IGSF11Q5DX21 431 aa8.6□□□□□ -1.03
USP54-201ENST00000339859 FAM201AQ5SY85 155 aa8.6□□□□□ -1.03
USP54-201ENST00000339859 ABHD1Q96SE0 405 aa8.6□□□□□ -1.03
USP54-201ENST00000339859 ZNF14P17017 642 aaPredicted RBP8.6□□□□□ -1.03
USP54-201ENST00000339859 WT1P19544 449 aaPredicted RBP8.6□□□□□ -1.03
USP54-201ENST00000339859 CCL1P22362 96 aa8.6□□□□□ -1.03
USP54-201ENST00000339859 DVL1P1P54792 670 aaPredicted RBP8.6□□□□□ -1.03
USP54-201ENST00000339859 FLI1Q01543 452 aaPredicted RBP8.6□□□□□ -1.03
USP54-201ENST00000339859 LINC01356Q8N9X3 169 aa8.6□□□□□ -1.03
USP54-201ENST00000339859 OR1B1Q8NGR6 318 aa8.6□□□□□ -1.03
USP54-201ENST00000339859 OR1A1Q9P1Q5 309 aa8.6□□□□□ -1.03
USP54-201ENST00000339859 KBTBD11-OT1A0A1B0GTJ5 212 aa8.59□□□□□ -1.03
USP54-201ENST00000339859 M0QZK8 103 aa8.59□□□□□ -1.03
USP54-201ENST00000339859 PFDN5Q99471 154 aa8.59□□□□□ -1.03
USP54-201ENST00000339859 PROK2Q9HC23 129 aa8.59□□□□□ -1.03
USP54-201ENST00000339859 SYNGR2O43760 224 aa8.59□□□□□ -1.03
USP54-201ENST00000339859 ACAA1P09110 424 aaPredicted RBP8.59□□□□□ -1.03
USP54-201ENST00000339859 RAB5CP51148 216 aa8.59□□□□□ -1.03
USP54-201ENST00000339859 WDR82Q6UXN9 313 aa8.59□□□□□ -1.03
USP54-201ENST00000339859 OR4X2Q8NGF9 303 aa8.59□□□□□ -1.03
USP54-201ENST00000339859 YIPF5Q969M3 257 aa8.59□□□□□ -1.03
USP54-201ENST00000339859 MRGPRFQ96AM1 343 aa8.59□□□□□ -1.03
USP54-201ENST00000339859 TLNRD1Q9H1K6 362 aa8.59□□□□□ -1.03
USP54-201ENST00000339859 SLC45A2Q9UMX9 530 aa8.59□□□□□ -1.03
USP54-201ENST00000339859 KLF2Q9Y5W3 355 aaPredicted RBP8.59□□□□□ -1.03
USP54-201ENST00000339859 POMT1Q9Y6A1 747 aa8.59□□□□□ -1.03
USP54-201ENST00000339859 COL4A3Q01955 1670 aa8.59□□□□□ -1.03
USP54-201ENST00000339859 BOLA2-SMG1P6H3BVE0 249 aa8.59□□□□□ -1.03
USP54-201ENST00000339859 AKR1C3P42330 323 aa8.59□□□□□ -1.03
USP54-201ENST00000339859 RPL8P62917 257 aaKnown RBP8.59□□□□□ -1.03
USP54-201ENST00000339859 FGFBP3Q8TAT2 258 aa8.59□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 88.8 ms