RNA–Protein interactions for RNA: ENST00000339394.6

SDC3-202, Transcript of syndecan 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC3, Length 1,580 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-202ENST00000339394 RDH8Q9NYR8 311 aa18.02■□□□□ 0.48
SDC3-202ENST00000339394 MXRA5Q9NR99 2828 aa18.02■□□□□ 0.48
SDC3-202ENST00000339394 PMP2P02689 132 aa18.01■□□□□ 0.47
SDC3-202ENST00000339394 HRH1P35367 487 aa18.01■□□□□ 0.47
SDC3-202ENST00000339394 SAA4P35542 130 aa18.01■□□□□ 0.47
SDC3-202ENST00000339394 TAS2R46P59540 309 aa18.01■□□□□ 0.47
SDC3-202ENST00000339394 CDK10Q15131 360 aa18.01■□□□□ 0.47
SDC3-202ENST00000339394 HLA-DRB5Q30154 266 aa18.01■□□□□ 0.47
SDC3-202ENST00000339394 MIDNQ504T8 468 aa18.01■□□□□ 0.47
SDC3-202ENST00000339394 LY6G6FQ5SQ64 297 aa18.01■□□□□ 0.47
SDC3-202ENST00000339394 SLC25A48Q6ZT89 311 aaKnown RBP18.01■□□□□ 0.47
SDC3-202ENST00000339394 OVCH2Q7RTZ1 564 aa18.01■□□□□ 0.47
SDC3-202ENST00000339394 GDPD1Q8N9F7 314 aa18.01■□□□□ 0.47
SDC3-202ENST00000339394 C8orf31Q8N9H6 132 aa18.01■□□□□ 0.47
SDC3-202ENST00000339394 OR2AK2Q8NG84 335 aa18.01■□□□□ 0.47
SDC3-202ENST00000339394 S100ZQ8WXG8 99 aa18.01■□□□□ 0.47
SDC3-202ENST00000339394 C22orf15Q8WYQ4 148 aa18.01■□□□□ 0.47
SDC3-202ENST00000339394 SDHCQ99643 169 aaPredicted RBP18.01■□□□□ 0.47
SDC3-202ENST00000339394 TOLLIPQ9H0E2 274 aa18.01■□□□□ 0.47
SDC3-202ENST00000339394 ZNF69Q9UC07 566 aa18.01■□□□□ 0.47
SDC3-202ENST00000339394 SOX21Q9Y651 276 aaPredicted RBP18.01■□□□□ 0.47
SDC3-202ENST00000339394 NSD1Q96L73 2696 aaPredicted RBP18.01■□□□□ 0.47
SDC3-202ENST00000339394 TEP1Q99973 2627 aaKnown RBP18■□□□□ 0.47
SDC3-202ENST00000339394 ZNF736B4DX44 427 aaPredicted RBP18■□□□□ 0.47
SDC3-202ENST00000339394 CD3DP04234 171 aa18■□□□□ 0.47
SDC3-202ENST00000339394 OR5H8P0DN80 308 aa18■□□□□ 0.47
SDC3-202ENST00000339394 NFYAP23511 347 aaPredicted RBP18■□□□□ 0.47
SDC3-202ENST00000339394 OR3A3P47888 321 aa18■□□□□ 0.47
SDC3-202ENST00000339394 LGALS4P56470 323 aa18■□□□□ 0.47
SDC3-202ENST00000339394 LDLRAD2Q5SZI1 272 aa18■□□□□ 0.47
SDC3-202ENST00000339394 LHFPL4Q7Z7J7 247 aa18■□□□□ 0.47
SDC3-202ENST00000339394 LINC00311Q8N616 119 aa18■□□□□ 0.47
SDC3-202ENST00000339394 OR5H2Q8NGV7 314 aa18■□□□□ 0.47
SDC3-202ENST00000339394 CUBNO60494 3623 aa18■□□□□ 0.47
SDC3-202ENST00000339394 H1FOOQ8IZA3 346 aaPredicted RBP18■□□□□ 0.47
SDC3-202ENST00000339394 TMEM229BQ8NBD8 167 aa18■□□□□ 0.47
SDC3-202ENST00000339394 OR10X1Q8NGY0 326 aa18■□□□□ 0.47
SDC3-202ENST00000339394 C17orf50Q8WW18 174 aa18■□□□□ 0.47
SDC3-202ENST00000339394 TRIM63Q969Q1 353 aa18■□□□□ 0.47
SDC3-202ENST00000339394 ABHD14AQ9BUJ0 271 aa18■□□□□ 0.47
SDC3-202ENST00000339394 MS4A7Q9GZW8 240 aaPredicted RBP18■□□□□ 0.47
SDC3-202ENST00000339394 C11orf54Q9H0W9 315 aaPredicted RBP18■□□□□ 0.47
SDC3-202ENST00000339394 TAS2R8Q9NYW2 309 aa18■□□□□ 0.47
SDC3-202ENST00000339394 EHFQ9NZC4 300 aa18■□□□□ 0.47
SDC3-202ENST00000339394 ZNF107Q9UII5 783 aaPredicted RBP18■□□□□ 0.47
SDC3-202ENST00000339394 BUB1B-PAK6H3BSN5 160 aa17.99■□□□□ 0.47
SDC3-202ENST00000339394 HTR1DP28221 377 aa17.99■□□□□ 0.47
SDC3-202ENST00000339394 TAS2R19P59542 299 aa17.99■□□□□ 0.47
SDC3-202ENST00000339394 BAK1Q16611 211 aa17.99■□□□□ 0.47
SDC3-202ENST00000339394 C9orf139Q6ZV77 190 aa17.99■□□□□ 0.47
SDC3-202ENST00000339394 BCL6BQ8N143 479 aaPredicted RBP17.99■□□□□ 0.47
SDC3-202ENST00000339394 EDARADDQ8WWZ3 215 aa17.99■□□□□ 0.47
SDC3-202ENST00000339394 AJUBAQ96IF1 538 aa17.99■□□□□ 0.47
SDC3-202ENST00000339394 AGMATQ9BSE5 352 aa17.99■□□□□ 0.47
SDC3-202ENST00000339394 CSF1P09603 554 aa17.98■□□□□ 0.47
SDC3-202ENST00000339394 SRD5A1P18405 259 aa17.98■□□□□ 0.47
SDC3-202ENST00000339394 EPHA1P21709 976 aa17.98■□□□□ 0.47
SDC3-202ENST00000339394 FCGR2CP31995 323 aa17.98■□□□□ 0.47
SDC3-202ENST00000339394 DYRK1AQ13627 763 aa17.98■□□□□ 0.47
SDC3-202ENST00000339394 TBL2Q9Y4P3 447 aaKnown RBP17.98■□□□□ 0.47
SDC3-202ENST00000339394 A0A0U1RQK1 487 aa17.97■□□□□ 0.47
SDC3-202ENST00000339394 M0QYG6 137 aa17.97■□□□□ 0.47
SDC3-202ENST00000339394 ITGB1BP1O14713 200 aa17.97■□□□□ 0.47
SDC3-202ENST00000339394 ST8SIA5O15466 376 aa17.97■□□□□ 0.47
SDC3-202ENST00000339394 ACTBL2Q562R1 376 aa17.97■□□□□ 0.47
SDC3-202ENST00000339394 MINOS1Q5TGZ0 78 aa17.97■□□□□ 0.47
SDC3-202ENST00000339394 CREB3L1Q96BA8 519 aa17.97■□□□□ 0.47
SDC3-202ENST00000339394 DPM3Q9P2X0 92 aa17.97■□□□□ 0.47
SDC3-202ENST00000339394 MINOS1-NBL1R4GNA1 71 aa17.97■□□□□ 0.47
SDC3-202ENST00000339394 FN1P02751 2386 aaKnown RBP17.97■□□□□ 0.47
SDC3-202ENST00000339394 NAV3Q8IVL0 2385 aa17.97■□□□□ 0.47
SDC3-202ENST00000339394 ANKRD20A5PA0PJZ0 165 aa17.96■□□□□ 0.47
SDC3-202ENST00000339394 CRLF1O75462 422 aa17.96■□□□□ 0.47
SDC3-202ENST00000339394 TUSC2O75896 110 aa17.96■□□□□ 0.47
SDC3-202ENST00000339394 CD74P04233 296 aa17.96■□□□□ 0.47
SDC3-202ENST00000339394 OR8U9P0C7N5 309 aa17.96■□□□□ 0.47
SDC3-202ENST00000339394 TBPP20226 339 aa17.96■□□□□ 0.47
SDC3-202ENST00000339394 LSAMPQ13449 338 aa17.96■□□□□ 0.47
SDC3-202ENST00000339394 VAX1Q5SQQ9 334 aa17.96■□□□□ 0.47
SDC3-202ENST00000339394 STEAP1BQ6NZ63 245 aa17.96■□□□□ 0.47
SDC3-202ENST00000339394 DHRS11Q6UWP2 260 aa17.96■□□□□ 0.47
SDC3-202ENST00000339394 LYG1Q8N1E2 194 aa17.96■□□□□ 0.47
SDC3-202ENST00000339394 OR4D10Q8NGI6 311 aa17.96■□□□□ 0.47
SDC3-202ENST00000339394 OR8U1Q8NH10 309 aa17.96■□□□□ 0.47
SDC3-202ENST00000339394 GIMAP1Q8WWP7 306 aa17.96■□□□□ 0.47
SDC3-202ENST00000339394 WDR12Q9GZL7 423 aaKnown RBP17.96■□□□□ 0.47
SDC3-202ENST00000339394 TINAGL1Q9GZM7 467 aaPredicted RBP17.96■□□□□ 0.47
SDC3-202ENST00000339394 IFI27L2Q9H2X8 130 aa17.96■□□□□ 0.47
SDC3-202ENST00000339394 OR2W1Q9Y3N9 320 aa17.96■□□□□ 0.47
SDC3-202ENST00000339394 AMMECR1Q9Y4X0 333 aaPredicted RBP17.96■□□□□ 0.47
SDC3-202ENST00000339394 LEUTXA8MZ59 168 aa17.96■□□□□ 0.46
SDC3-202ENST00000339394 LY6LH3BQJ8 138 aa17.96■□□□□ 0.46
SDC3-202ENST00000339394 PAX6P26367 422 aa17.96■□□□□ 0.46
SDC3-202ENST00000339394 RAB7AP51149 207 aa17.96■□□□□ 0.46
SDC3-202ENST00000339394 PPP5CP53041 499 aa17.96■□□□□ 0.46
SDC3-202ENST00000339394 RNASE10Q5GAN6 216 aaKnown RBP17.96■□□□□ 0.46
SDC3-202ENST00000339394 ZNF660Q6AZW8 331 aaPredicted RBP17.96■□□□□ 0.46
SDC3-202ENST00000339394 ODF3L1Q8IXM7 274 aa17.96■□□□□ 0.46
SDC3-202ENST00000339394 MALSU1Q96EH3 234 aa17.96■□□□□ 0.46
SDC3-202ENST00000339394 RNF150Q9ULK6 438 aa17.96■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms