RNA–Protein interactions for RNA: ENST00000338585.6

MCF2-201, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene MCF2, Length 2,826 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-201ENST00000338585 TRAV14DV4A0A0A6YYC5 116 aa3.42□□□□□ -1.86
MCF2-201ENST00000338585 C3orf85A0A1B0GTC6 90 aa3.42□□□□□ -1.86
MCF2-201ENST00000338585 A0A1W2PPE3 182 aa3.42□□□□□ -1.86
MCF2-201ENST00000338585 A1L4Q6 167 aa3.42□□□□□ -1.86
MCF2-201ENST00000338585 C5orf51A6NDU8 294 aa3.42□□□□□ -1.86
MCF2-201ENST00000338585 DVL1O14640 695 aa3.42□□□□□ -1.86
MCF2-201ENST00000338585 ST8SIA5O15466 376 aa3.42□□□□□ -1.86
MCF2-201ENST00000338585 SPINT2O43291 252 aa3.42□□□□□ -1.86
MCF2-201ENST00000338585 PGLYRP1O75594 196 aaPredicted RBP3.42□□□□□ -1.86
MCF2-201ENST00000338585 IGHV2-70P01814 119 aa3.42□□□□□ -1.86
MCF2-201ENST00000338585 DAOP14920 347 aa3.42□□□□□ -1.86
MCF2-201ENST00000338585 CCL3L1P16619 93 aa3.42□□□□□ -1.86
MCF2-201ENST00000338585 HLA-GP17693 338 aa3.42□□□□□ -1.86
MCF2-201ENST00000338585 GZMHP20718 246 aa3.42□□□□□ -1.86
MCF2-201ENST00000338585 LOXL3P58215 753 aa3.42□□□□□ -1.86
MCF2-201ENST00000338585 RAP2BP61225 183 aa3.42□□□□□ -1.86
MCF2-201ENST00000338585 TMEM187Q14656 261 aa3.42□□□□□ -1.86
MCF2-201ENST00000338585 LRRC37A5PQ49AS3 106 aa3.42□□□□□ -1.86
MCF2-201ENST00000338585 DRAM1Q8N682 238 aa3.42□□□□□ -1.86
MCF2-201ENST00000338585 DRAXINQ8NBI3 349 aaPredicted RBP3.42□□□□□ -1.86
MCF2-201ENST00000338585 OR5D13Q8NGL4 314 aa3.42□□□□□ -1.86
MCF2-201ENST00000338585 OR51H1Q8NH63 302 aa3.42□□□□□ -1.86
MCF2-201ENST00000338585 COQ8AQ8NI60 647 aa3.42□□□□□ -1.86
MCF2-201ENST00000338585 H1FXQ92522 213 aaKnown RBP3.42□□□□□ -1.86
MCF2-201ENST00000338585 MSI2Q96DH6 328 aaKnown RBP3.42□□□□□ -1.86
MCF2-201ENST00000338585 GALNT14Q96FL9 552 aa3.42□□□□□ -1.86
MCF2-201ENST00000338585 ZNF486Q96H40 463 aaPredicted RBP3.42□□□□□ -1.86
MCF2-201ENST00000338585 ABHD14BQ96IU4 210 aa3.42□□□□□ -1.86
MCF2-201ENST00000338585 OR10C1Q96KK4 312 aa3.42□□□□□ -1.86
MCF2-201ENST00000338585 PDCD10Q9BUL8 212 aa3.42□□□□□ -1.86
MCF2-201ENST00000338585 RAB1BQ9H0U4 201 aa3.42□□□□□ -1.86
MCF2-201ENST00000338585 FAM234AQ9H0X4 552 aa3.42□□□□□ -1.86
MCF2-201ENST00000338585 OR2D2Q9H210 308 aa3.42□□□□□ -1.86
MCF2-201ENST00000338585 OR6C3Q9NZP0 311 aa3.42□□□□□ -1.86
MCF2-201ENST00000338585 GNG12Q9UBI6 72 aa3.42□□□□□ -1.86
MCF2-201ENST00000338585 PSG11Q9UQ72 335 aa3.42□□□□□ -1.86
MCF2-201ENST00000338585 YLPM1P49750 1951 aaKnown RBP3.42□□□□□ -1.86
MCF2-201ENST00000338585 TRGV10A0A0A0MS01 117 aa3.42□□□□□ -1.86
MCF2-201ENST00000338585 A0A0B4J2A0 478 aa3.42□□□□□ -1.86
MCF2-201ENST00000338585 KBTBD11-OT1A0A1B0GTJ5 212 aa3.42□□□□□ -1.86
MCF2-201ENST00000338585 SLC31A2O15432 143 aa3.42□□□□□ -1.86
MCF2-201ENST00000338585 NDUFB3O43676 98 aa3.42□□□□□ -1.86
MCF2-201ENST00000338585 ERP29P30040 261 aaKnown RBP3.42□□□□□ -1.86
MCF2-201ENST00000338585 SMCPP49901 116 aaPredicted RBP3.42□□□□□ -1.86
MCF2-201ENST00000338585 ZNF134P52741 427 aa3.42□□□□□ -1.86
MCF2-201ENST00000338585 LINC00205P59089 165 aa3.42□□□□□ -1.86
MCF2-201ENST00000338585 RND3P61587 244 aa3.42□□□□□ -1.86
MCF2-201ENST00000338585 RPL31P62899 125 aaKnown RBP3.42□□□□□ -1.86
MCF2-201ENST00000338585 PRAMEF5Q5TYX0 476 aa3.42□□□□□ -1.86
MCF2-201ENST00000338585 TMEM200BQ69YZ2 307 aa3.42□□□□□ -1.86
MCF2-201ENST00000338585 LPCAT3Q6P1A2 487 aa3.42□□□□□ -1.86
MCF2-201ENST00000338585 BTNL3Q6UXE8 466 aa3.42□□□□□ -1.86
MCF2-201ENST00000338585 LYZL2Q7Z4W2 148 aa3.42□□□□□ -1.86
MCF2-201ENST00000338585 C9orf62Q8N4C0 152 aa3.42□□□□□ -1.86
MCF2-201ENST00000338585 CCDC71LQ8N9Z2 235 aa3.42□□□□□ -1.86
MCF2-201ENST00000338585 BVESQ8NE79 360 aa3.42□□□□□ -1.86
MCF2-201ENST00000338585 NINJ1Q92982 152 aa3.42□□□□□ -1.86
MCF2-201ENST00000338585 RBMXL1Q96E39 390 aaKnown RBP3.42□□□□□ -1.86
MCF2-201ENST00000338585 AGMATQ9BSE5 352 aa3.42□□□□□ -1.86
MCF2-201ENST00000338585 NARFLQ9H6Q4 476 aa3.42□□□□□ -1.86
MCF2-201ENST00000338585 METTL8Q9H825 291 aaKnown RBP3.42□□□□□ -1.86
MCF2-201ENST00000338585 ZNRD1Q9P1U0 126 aa3.42□□□□□ -1.86
MCF2-201ENST00000338585 CLN8Q9UBY8 286 aa3.42□□□□□ -1.86
MCF2-201ENST00000338585 SHPKQ9UHJ6 478 aa3.42□□□□□ -1.86
MCF2-201ENST00000338585 HSPB11Q9Y547 144 aa3.42□□□□□ -1.86
MCF2-201ENST00000338585 MALRD1Q5VYJ5 2156 aa3.42□□□□□ -1.86
MCF2-201ENST00000338585 KMT2BQ9UMN6 2715 aaPredicted RBP3.41□□□□□ -1.86
MCF2-201ENST00000338585 LRRK2Q5S007 2527 aa3.41□□□□□ -1.86
MCF2-201ENST00000338585 CHD6Q8TD26 2715 aa3.41□□□□□ -1.86
MCF2-201ENST00000338585 FXYD6-FXYD2A0A087WZ82 144 aa3.41□□□□□ -1.86
MCF2-201ENST00000338585 F2RL2O00254 374 aa3.41□□□□□ -1.86
MCF2-201ENST00000338585 PPIHO43447 177 aaKnown RBP3.41□□□□□ -1.86
MCF2-201ENST00000338585 KCNAB3O43448 404 aa3.41□□□□□ -1.86
MCF2-201ENST00000338585 CLDN1O95832 211 aa3.41□□□□□ -1.86
MCF2-201ENST00000338585 NFYBP25208 207 aa3.41□□□□□ -1.86
MCF2-201ENST00000338585 SSTR2P30874 369 aa3.41□□□□□ -1.86
MCF2-201ENST00000338585 HTD2P86397 168 aa3.41□□□□□ -1.86
MCF2-201ENST00000338585 IFITM2Q01629 132 aa3.41□□□□□ -1.86
MCF2-201ENST00000338585 SRSF4Q08170 494 aaKnown RBP3.41□□□□□ -1.86
MCF2-201ENST00000338585 MORN2Q502X0 79 aa3.41□□□□□ -1.86
MCF2-201ENST00000338585 TMEM268Q5VZI3 342 aa3.41□□□□□ -1.86
MCF2-201ENST00000338585 GGNBP1Q5YKI7 109 aa3.41□□□□□ -1.86
MCF2-201ENST00000338585 TRAT1Q6PIZ9 186 aa3.41□□□□□ -1.86
MCF2-201ENST00000338585 GSG1LQ6UXU4 331 aa3.41□□□□□ -1.86
MCF2-201ENST00000338585 LIAT1Q6ZQX7 453 aa3.41□□□□□ -1.86
MCF2-201ENST00000338585 CMTM1Q8IZ96 169 aa3.41□□□□□ -1.86
MCF2-201ENST00000338585 SLC35G3Q8N808 338 aa3.41□□□□□ -1.86
MCF2-201ENST00000338585 PPP1R1CQ8WVI7 109 aa3.41□□□□□ -1.86
MCF2-201ENST00000338585 C18orf12Q96KH6 178 aa3.41□□□□□ -1.86
MCF2-201ENST00000338585 HYLS1Q96M11 299 aa3.41□□□□□ -1.86
MCF2-201ENST00000338585 SUCNR1Q9BXA5 334 aa3.41□□□□□ -1.86
MCF2-201ENST00000338585 TOLLIPQ9H0E2 274 aa3.41□□□□□ -1.86
MCF2-201ENST00000338585 TMEM222Q9H0R3 208 aa3.41□□□□□ -1.86
MCF2-201ENST00000338585 NCOR1P1Q9H4R4 102 aa3.41□□□□□ -1.86
MCF2-201ENST00000338585 RANBP3Q9H6Z4 567 aaPredicted RBP3.41□□□□□ -1.86
MCF2-201ENST00000338585 RAB18Q9NP72 206 aa3.41□□□□□ -1.86
MCF2-201ENST00000338585 KAAG1Q9UBP8 84 aa3.41□□□□□ -1.86
MCF2-201ENST00000338585 KCNIP3Q9Y2W7 256 aa3.41□□□□□ -1.86
MCF2-201ENST00000338585 UBE2J1Q9Y385 318 aaPredicted RBP3.41□□□□□ -1.86
MCF2-201ENST00000338585 hADV38S2A0JD32 116 aa3.41□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms