RNA–Protein interactions for RNA: ENST00000309546.7

LIME1-201, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIME1, Length 1,178 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-201ENST00000309546 RGS11O94810 467 aa15.34■□□□□ 0.05
LIME1-201ENST00000309546 VDAC1P21796 283 aa15.34■□□□□ 0.05
LIME1-201ENST00000309546 SLC6A1P30531 599 aa15.34■□□□□ 0.05
LIME1-201ENST00000309546 MYCNOSP40205 109 aa15.34■□□□□ 0.05
LIME1-201ENST00000309546 KRTAP10-11P60412 298 aa15.34■□□□□ 0.05
LIME1-201ENST00000309546 IRF3Q14653 427 aa15.34■□□□□ 0.05
LIME1-201ENST00000309546 CXorf66Q5JRM2 361 aaPredicted RBP15.34■□□□□ 0.05
LIME1-201ENST00000309546 OR2AK2Q8NG84 335 aa15.34■□□□□ 0.05
LIME1-201ENST00000309546 IL1F10Q8WWZ1 152 aa15.34■□□□□ 0.05
LIME1-201ENST00000309546 GPR61Q9BZJ8 451 aa15.34■□□□□ 0.05
LIME1-201ENST00000309546 ABRACLQ9P1F3 81 aa15.34■□□□□ 0.05
LIME1-201ENST00000309546 SLC22A1O15245 554 aa15.33■□□□□ 0.04
LIME1-201ENST00000309546 YPEL1O60688 119 aa15.33■□□□□ 0.04
LIME1-201ENST00000309546 UCHL1P09936 223 aa15.33■□□□□ 0.04
LIME1-201ENST00000309546 BLVRBP30043 206 aaPredicted RBP15.33■□□□□ 0.04
LIME1-201ENST00000309546 RPS25P62851 125 aaKnown RBP15.33■□□□□ 0.04
LIME1-201ENST00000309546 HTD2P86397 168 aa15.33■□□□□ 0.04
LIME1-201ENST00000309546 P2RY14Q15391 338 aa15.33■□□□□ 0.04
LIME1-201ENST00000309546 HMGN3Q15651 99 aa15.33■□□□□ 0.04
LIME1-201ENST00000309546 DEFB136Q30KP8 78 aa15.33■□□□□ 0.04
LIME1-201ENST00000309546 ODF3L1Q8IXM7 274 aa15.33■□□□□ 0.04
LIME1-201ENST00000309546 SVOPQ8N4V2 548 aa15.33■□□□□ 0.04
LIME1-201ENST00000309546 OR6M1Q8NGM8 313 aa15.33■□□□□ 0.04
LIME1-201ENST00000309546 YPEL2Q96QA6 119 aa15.33■□□□□ 0.04
LIME1-201ENST00000309546 TM2D1Q9BX74 207 aa15.33■□□□□ 0.04
LIME1-201ENST00000309546 PLGRKTQ9HBL7 147 aa15.33■□□□□ 0.04
LIME1-201ENST00000309546 ZNF107Q9UII5 783 aaPredicted RBP15.33■□□□□ 0.04
LIME1-201ENST00000309546 SAA2-SAA4A0A096LPE2 208 aa15.32■□□□□ 0.04
LIME1-201ENST00000309546 WI2-2373I1.2A0A1W2PRP0 233 aa15.32■□□□□ 0.04
LIME1-201ENST00000309546 TMEM14DPA8MWL7 114 aa15.32■□□□□ 0.04
LIME1-201ENST00000309546 RGS10O43665 173 aa15.32■□□□□ 0.04
LIME1-201ENST00000309546 BPNT1O95861 308 aa15.32■□□□□ 0.04
LIME1-201ENST00000309546 SAA2P0DJI9 122 aaPredicted RBP15.32■□□□□ 0.04
LIME1-201ENST00000309546 OR3A3P47888 321 aa15.32■□□□□ 0.04
LIME1-201ENST00000309546 ACTBP60709 375 aa15.32■□□□□ 0.04
LIME1-201ENST00000309546 DEFB121Q5J5C9 76 aa15.32■□□□□ 0.04
LIME1-201ENST00000309546 RAX2Q96IS3 184 aa15.32■□□□□ 0.04
LIME1-201ENST00000309546 P2RX4Q99571 388 aa15.32■□□□□ 0.04
LIME1-201ENST00000309546 NABP2Q9BQ15 211 aa15.32■□□□□ 0.04
LIME1-201ENST00000309546 MCRIP2Q9BUT9 160 aaKnown RBP15.32■□□□□ 0.04
LIME1-201ENST00000309546 CCDC90BQ9GZT6 254 aa15.32■□□□□ 0.04
LIME1-201ENST00000309546 PLEKHJ1Q9NW61 149 aa15.32■□□□□ 0.04
LIME1-201ENST00000309546 STEAP1Q9UHE8 339 aa15.32■□□□□ 0.04
LIME1-201ENST00000309546 LRRC42Q9Y546 428 aa15.32■□□□□ 0.04
LIME1-201ENST00000309546 A0A0A6YYD4 124 aa15.31■□□□□ 0.04
LIME1-201ENST00000309546 ST8SIA5O15466 376 aa15.31■□□□□ 0.04
LIME1-201ENST00000309546 CNTFRP26992 372 aa15.31■□□□□ 0.04
LIME1-201ENST00000309546 FOXE3Q13461 319 aa15.31■□□□□ 0.04
LIME1-201ENST00000309546 ZNF251Q9BRH9 671 aa15.31■□□□□ 0.04
LIME1-201ENST00000309546 AK6Q9Y3D8 172 aaKnown RBP15.31■□□□□ 0.04
LIME1-201ENST00000309546 CCL24O00175 119 aa15.3■□□□□ 0.04
LIME1-201ENST00000309546 ELANEP08246 267 aa15.3■□□□□ 0.04
LIME1-201ENST00000309546 ARSBP15848 533 aa15.3■□□□□ 0.04
LIME1-201ENST00000309546 QRFPP83859 136 aa15.3■□□□□ 0.04
LIME1-201ENST00000309546 CFHR3Q02985 330 aa15.3■□□□□ 0.04
LIME1-201ENST00000309546 EGFEM1PQ0D2K5 195 aa15.3■□□□□ 0.04
LIME1-201ENST00000309546 ZNF833PQ6ZTB9 187 aa15.3■□□□□ 0.04
LIME1-201ENST00000309546 MOB1BQ7L9L4 216 aa15.3■□□□□ 0.04
LIME1-201ENST00000309546 OR8U1Q8NH10 309 aa15.3■□□□□ 0.04
LIME1-201ENST00000309546 RITA1Q96K30 269 aa15.3■□□□□ 0.04
LIME1-201ENST00000309546 KCTD7Q96MP8 289 aa15.3■□□□□ 0.04
LIME1-201ENST00000309546 GFI1Q99684 422 aa15.3■□□□□ 0.04
LIME1-201ENST00000309546 URM1Q9BTM9 101 aaKnown RBP15.3■□□□□ 0.04
LIME1-201ENST00000309546 IFI27L2Q9H2X8 130 aa15.3■□□□□ 0.04
LIME1-201ENST00000309546 DUSP21Q9H596 190 aa15.3■□□□□ 0.04
LIME1-201ENST00000309546 NBR2O15453 112 aa15.29■□□□□ 0.04
LIME1-201ENST00000309546 SOCS1O15524 211 aa15.29■□□□□ 0.04
LIME1-201ENST00000309546 NAPSAO96009 420 aa15.29■□□□□ 0.04
LIME1-201ENST00000309546 TPBGQ13641 420 aa15.29■□□□□ 0.04
LIME1-201ENST00000309546 TRAM1Q15629 374 aa15.29■□□□□ 0.04
LIME1-201ENST00000309546 RAB11BQ15907 218 aa15.29■□□□□ 0.04
LIME1-201ENST00000309546 LY6G6FQ5SQ64 297 aa15.29■□□□□ 0.04
LIME1-201ENST00000309546 TMEM91Q6ZNR0 172 aa15.29■□□□□ 0.04
LIME1-201ENST00000309546 HDHD3Q9BSH5 251 aaPredicted RBP15.29■□□□□ 0.04
LIME1-201ENST00000309546 LPAR5Q9H1C0 372 aa15.29■□□□□ 0.04
LIME1-201ENST00000309546 PARP11Q9NR21 331 aa15.29■□□□□ 0.04
LIME1-201ENST00000309546 AK3Q9UIJ7 227 aa15.29■□□□□ 0.04
LIME1-201ENST00000309546 SLC17A2O00624 439 aa15.28■□□□□ 0.04
LIME1-201ENST00000309546 ATP6V0E1O15342 81 aa15.28■□□□□ 0.04
LIME1-201ENST00000309546 ARL6IP5O75915 188 aa15.28■□□□□ 0.04
LIME1-201ENST00000309546 IGHG4P01861 327 aa15.28■□□□□ 0.04
LIME1-201ENST00000309546 IGF1P05019 195 aa15.28■□□□□ 0.04
LIME1-201ENST00000309546 OR5H8P0DN80 308 aa15.28■□□□□ 0.04
LIME1-201ENST00000309546 MAP2K4P45985 399 aa15.28■□□□□ 0.04
LIME1-201ENST00000309546 CDX1P47902 265 aaPredicted RBP15.28■□□□□ 0.04
LIME1-201ENST00000309546 MLLT11Q13015 90 aaPredicted RBP15.28■□□□□ 0.04
LIME1-201ENST00000309546 RPL39P5Q59GN2 51 aa15.28■□□□□ 0.04
LIME1-201ENST00000309546 ZNF880Q6PDB4 577 aa15.28■□□□□ 0.04
LIME1-201ENST00000309546 FAM131AQ6UXB0 335 aa15.28■□□□□ 0.04
LIME1-201ENST00000309546 ANKRD60Q9BZ19 345 aa15.28■□□□□ 0.04
LIME1-201ENST00000309546 PIPOXQ9P0Z9 390 aa15.28■□□□□ 0.04
LIME1-201ENST00000309546 KIAA1456Q9P272 454 aa15.28■□□□□ 0.04
LIME1-201ENST00000309546 SLC23A1Q9UHI7 598 aa15.28■□□□□ 0.04
LIME1-201ENST00000309546 WSB1Q9Y6I7 421 aa15.28■□□□□ 0.04
LIME1-201ENST00000309546 CD37P11049 281 aa15.27■□□□□ 0.04
LIME1-201ENST00000309546 CPEP16870 476 aa15.27■□□□□ 0.04
LIME1-201ENST00000309546 CRHBPP24387 322 aa15.27■□□□□ 0.04
LIME1-201ENST00000309546 PSMA1P25786 263 aaKnown RBP15.27■□□□□ 0.04
LIME1-201ENST00000309546 CALRP27797 417 aaKnown RBP15.27■□□□□ 0.04
LIME1-201ENST00000309546 CLDN12P56749 244 aa15.27■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms