RNA–Protein interactions for RNA: ENST00000304636.7

COL3A1-201, Transcript of collagen type III alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL3A1, Length 5,543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-201ENST00000304636 MS4A18H0YCH9 400 aa11.14□□□□□ -0.63
COL3A1-201ENST00000304636 PGLYRP1O75594 196 aaPredicted RBP11.14□□□□□ -0.63
COL3A1-201ENST00000304636 HPRT1P00492 218 aa11.14□□□□□ -0.63
COL3A1-201ENST00000304636 MS4A18Q3C1V0 323 aa11.14□□□□□ -0.63
COL3A1-201ENST00000304636 OR4X1Q8NH49 305 aa11.14□□□□□ -0.63
COL3A1-201ENST00000304636 APOBEC4Q8WW27 367 aaKnown RBP11.14□□□□□ -0.63
COL3A1-201ENST00000304636 UQCR10Q9UDW1 63 aa11.14□□□□□ -0.63
COL3A1-201ENST00000304636 TINAGQ9UJW2 476 aa11.14□□□□□ -0.63
COL3A1-201ENST00000304636 LHFPL6Q9Y693 200 aa11.14□□□□□ -0.63
COL3A1-201ENST00000304636 MYO7AQ13402 2215 aa11.14□□□□□ -0.63
COL3A1-201ENST00000304636 FAM90A26D6RGX4 464 aa11.14□□□□□ -0.63
COL3A1-201ENST00000304636 IGHMP01871 453 aa11.14□□□□□ -0.63
COL3A1-201ENST00000304636 SCTP09683 121 aa11.14□□□□□ -0.63
COL3A1-201ENST00000304636 SPINK14Q6IE38 97 aa11.14□□□□□ -0.63
COL3A1-201ENST00000304636 THYN1Q9P016 225 aa11.14□□□□□ -0.63
COL3A1-201ENST00000304636 PXMP4Q9Y6I8 212 aa11.14□□□□□ -0.63
COL3A1-201ENST00000304636 TNKS1BP1Q9C0C2 1729 aaKnown RBP11.14□□□□□ -0.63
COL3A1-201ENST00000304636 LNP1A1A4G5 178 aa11.13□□□□□ -0.63
COL3A1-201ENST00000304636 HIST1H1BP16401 226 aaKnown RBP11.13□□□□□ -0.63
COL3A1-201ENST00000304636 NCBP2LA6PVI3 153 aaKnown RBP11.13□□□□□ -0.63
COL3A1-201ENST00000304636 UCP3P55916 312 aa11.13□□□□□ -0.63
COL3A1-201ENST00000304636 PSG4Q00888 419 aa11.13□□□□□ -0.63
COL3A1-201ENST00000304636 ATRAIDQ6UW56 229 aa11.13□□□□□ -0.63
COL3A1-201ENST00000304636 OR8G5Q8NG78 346 aa11.13□□□□□ -0.63
COL3A1-201ENST00000304636 A0A1B0GV90 55 aa11.13□□□□□ -0.63
COL3A1-201ENST00000304636 DHRS7CA6NNS2 312 aa11.13□□□□□ -0.63
COL3A1-201ENST00000304636 WDR25Q64LD2 544 aaPredicted RBP11.13□□□□□ -0.63
COL3A1-201ENST00000304636 TMEM116Q8NCL8 245 aa11.13□□□□□ -0.63
COL3A1-201ENST00000304636 GPR146Q96CH1 333 aa11.13□□□□□ -0.63
COL3A1-201ENST00000304636 Q96M66 194 aa11.13□□□□□ -0.63
COL3A1-201ENST00000304636 AMMECR1Q9Y4X0 333 aaPredicted RBP11.13□□□□□ -0.63
COL3A1-201ENST00000304636 ACP1P24666 158 aa11.13□□□□□ -0.63
COL3A1-201ENST00000304636 FHITP49789 147 aa11.13□□□□□ -0.63
COL3A1-201ENST00000304636 TNXAQ16473 311 aa11.13□□□□□ -0.63
COL3A1-201ENST00000304636 C2orf68Q2NKX9 166 aa11.13□□□□□ -0.63
COL3A1-201ENST00000304636 OR2I1PQ8NGU4 316 aa11.13□□□□□ -0.63
COL3A1-201ENST00000304636 A0A1W2PQF6 199 aa11.13□□□□□ -0.63
COL3A1-201ENST00000304636 AGAP20933 346 aa11.13□□□□□ -0.63
COL3A1-201ENST00000304636 ZNF506Q5JVG8 444 aa11.13□□□□□ -0.63
COL3A1-201ENST00000304636 TMEM183AQ8IXX5 376 aa11.13□□□□□ -0.63
COL3A1-201ENST00000304636 WDR54Q9H977 334 aa11.13□□□□□ -0.63
COL3A1-201ENST00000304636 MYO16Q9Y6X6 1858 aa11.12□□□□□ -0.63
COL3A1-201ENST00000304636 HLA-DQA1P01909 254 aa11.12□□□□□ -0.63
COL3A1-201ENST00000304636 HBZP02008 142 aa11.12□□□□□ -0.63
COL3A1-201ENST00000304636 CRYABP02511 175 aaKnown RBP11.12□□□□□ -0.63
COL3A1-201ENST00000304636 MFAP2P55001 183 aa11.12□□□□□ -0.63
COL3A1-201ENST00000304636 MARS2Q96GW9 593 aaKnown RBP11.12□□□□□ -0.63
COL3A1-201ENST00000304636 RBKSQ9H477 322 aa11.12□□□□□ -0.63
COL3A1-201ENST00000304636 F5P12259 2224 aa11.12□□□□□ -0.63
COL3A1-201ENST00000304636 AESQ08117 197 aa11.12□□□□□ -0.63
COL3A1-201ENST00000304636 GAMTQ14353 236 aa11.12□□□□□ -0.63
COL3A1-201ENST00000304636 GABRA6Q16445 453 aa11.12□□□□□ -0.63
COL3A1-201ENST00000304636 RNF222A6NCQ9 220 aa11.12□□□□□ -0.63
COL3A1-201ENST00000304636 OR52L2PQ8NGH6 319 aa11.12□□□□□ -0.63
COL3A1-201ENST00000304636 OR4C12Q96R67 309 aa11.12□□□□□ -0.63
COL3A1-201ENST00000304636 MRPL18Q9H0U6 180 aaKnown RBP11.12□□□□□ -0.63
COL3A1-201ENST00000304636 C5orf67F2Z3F1 127 aa11.12□□□□□ -0.63
COL3A1-201ENST00000304636 HOXB1P14653 301 aaPredicted RBP11.12□□□□□ -0.63
COL3A1-201ENST00000304636 SMIM8Q96KF7 97 aa11.12□□□□□ -0.63
COL3A1-201ENST00000304636 SAP30LQ9HAJ7 183 aa11.12□□□□□ -0.63
COL3A1-201ENST00000304636 WNT16Q9UBV4 365 aa11.12□□□□□ -0.63
COL3A1-201ENST00000304636 CDC42EP3Q9UKI2 254 aa11.12□□□□□ -0.63
COL3A1-201ENST00000304636 J3QR06 171 aa11.11□□□□□ -0.63
COL3A1-201ENST00000304636 DOLPP1Q86YN1 238 aa11.11□□□□□ -0.63
COL3A1-201ENST00000304636 OR1L1Q8NH94 360 aa11.11□□□□□ -0.63
COL3A1-201ENST00000304636 ZNF488Q96MN9 340 aa11.11□□□□□ -0.63
COL3A1-201ENST00000304636 ARRDC1-AS1Q9H2J1 176 aa11.11□□□□□ -0.63
COL3A1-201ENST00000304636 ONECUT1Q9UBC0 465 aa11.11□□□□□ -0.63
COL3A1-201ENST00000304636 TCFL5Q9UL49 500 aa11.11□□□□□ -0.63
COL3A1-201ENST00000304636 NEUROG3Q9Y4Z2 214 aa11.11□□□□□ -0.63
COL3A1-201ENST00000304636 STRCP1A6NGW2 1772 aa11.11□□□□□ -0.63
COL3A1-201ENST00000304636 TRAV14DV4A0A0A6YYC5 116 aa11.11□□□□□ -0.63
COL3A1-201ENST00000304636 RHBDL1O75783 438 aa11.11□□□□□ -0.63
COL3A1-201ENST00000304636 OR4A47Q6IF82 309 aa11.11□□□□□ -0.63
COL3A1-201ENST00000304636 ZNF645Q8N7E2 425 aa11.11□□□□□ -0.63
COL3A1-201ENST00000304636 RBBP6Q7Z6E9 1792 aaKnown RBP11.11□□□□□ -0.63
COL3A1-201ENST00000304636 ADAM11O75078 769 aa11.11□□□□□ -0.63
COL3A1-201ENST00000304636 MELTFP08582 738 aa11.11□□□□□ -0.63
COL3A1-201ENST00000304636 MESP2Q0VG99 397 aa11.11□□□□□ -0.63
COL3A1-201ENST00000304636 SLC25A40Q8TBP6 338 aa11.11□□□□□ -0.63
COL3A1-201ENST00000304636 ZFP30Q9Y2G7 519 aa11.11□□□□□ -0.63
COL3A1-201ENST00000304636 OR51B2Q9Y5P1 312 aa11.11□□□□□ -0.63
COL3A1-201ENST00000304636 TRAV38-1A0A0B4J264 116 aa11.11□□□□□ -0.63
COL3A1-201ENST00000304636 A0A0J9YW62 118 aa11.11□□□□□ -0.63
COL3A1-201ENST00000304636 KBTBD11O94819 623 aa11.11□□□□□ -0.63
COL3A1-201ENST00000304636 STAG3L2P0CL84 134 aa11.11□□□□□ -0.63
COL3A1-201ENST00000304636 RPL7P18124 248 aaKnown RBP11.11□□□□□ -0.63
COL3A1-201ENST00000304636 CHCHD2P9Q5T1J5 151 aaPredicted RBP11.11□□□□□ -0.63
COL3A1-201ENST00000304636 IBA57Q5T440 356 aaKnown RBP11.11□□□□□ -0.63
COL3A1-201ENST00000304636 OR1L8Q8NGR8 309 aa11.11□□□□□ -0.63
COL3A1-201ENST00000304636 TP53RKQ96S44 253 aa11.11□□□□□ -0.63
COL3A1-201ENST00000304636 MSGN1A6NI15 193 aa11.1□□□□□ -0.63
COL3A1-201ENST00000304636 HINT1P49773 126 aaPredicted RBP11.1□□□□□ -0.63
COL3A1-201ENST00000304636 DHRS13Q6UX07 377 aa11.1□□□□□ -0.63
COL3A1-201ENST00000304636 NR2C2APQ86WQ0 139 aa11.1□□□□□ -0.63
COL3A1-201ENST00000304636 OR8I2Q8N0Y5 310 aa11.1□□□□□ -0.63
COL3A1-201ENST00000304636 FLYWCH2Q96CP2 140 aaKnown RBP11.1□□□□□ -0.63
COL3A1-201ENST00000304636 MAGEA5P43359 124 aa11.1□□□□□ -0.63
COL3A1-201ENST00000304636 GNB2P62879 340 aa11.1□□□□□ -0.63
COL3A1-201ENST00000304636 CT55Q8WUE5 264 aa11.1□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms