RNA–Protein interactions for RNA: ENST00000295550.8

COL6A3-201, Transcript of collagen type VI alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL6A3, Length 10,749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-201ENST00000295550 OR8B3Q8NGG8 313 aa8.65□□□□□ -1.02
COL6A3-201ENST00000295550 OR1P1Q8NH06 330 aa8.65□□□□□ -1.02
COL6A3-201ENST00000295550 CXCL13O43927 109 aa8.65□□□□□ -1.02
COL6A3-201ENST00000295550 RCC1P18754 421 aaPredicted RBP8.65□□□□□ -1.02
COL6A3-201ENST00000295550 PRSS8Q16651 343 aa8.65□□□□□ -1.02
COL6A3-201ENST00000295550 ERASQ7Z444 233 aa8.65□□□□□ -1.02
COL6A3-201ENST00000295550 FOXJ2Q9P0K8 574 aa8.65□□□□□ -1.02
COL6A3-201ENST00000295550 ST6GALNAC2Q9UJ37 374 aa8.65□□□□□ -1.02
COL6A3-201ENST00000295550 ZNF324O75467 553 aaPredicted RBP8.65□□□□□ -1.02
COL6A3-201ENST00000295550 CD74P04233 296 aa8.65□□□□□ -1.02
COL6A3-201ENST00000295550 PTP4A1Q93096 173 aa8.65□□□□□ -1.02
COL6A3-201ENST00000295550 MRPL16Q9NX20 251 aaKnown RBP8.65□□□□□ -1.02
COL6A3-201ENST00000295550 SYNGR2O43760 224 aa8.65□□□□□ -1.02
COL6A3-201ENST00000295550 IGHV3-13P01766 116 aa8.65□□□□□ -1.02
COL6A3-201ENST00000295550 IGHV3-7P01780 117 aa8.65□□□□□ -1.02
COL6A3-201ENST00000295550 C1QCP02747 245 aa8.65□□□□□ -1.02
COL6A3-201ENST00000295550 LGALS7P47929 136 aa8.65□□□□□ -1.02
COL6A3-201ENST00000295550 NRTNQ99748 197 aa8.65□□□□□ -1.02
COL6A3-201ENST00000295550 CXorf65A6NEN9 183 aa8.65□□□□□ -1.02
COL6A3-201ENST00000295550 PAGE4O60829 102 aa8.65□□□□□ -1.02
COL6A3-201ENST00000295550 SMAD4Q13485 552 aaKnown RBP8.65□□□□□ -1.02
COL6A3-201ENST00000295550 SLC25A34Q6PIV7 304 aa8.65□□□□□ -1.02
COL6A3-201ENST00000295550 SARAFQ96BY9 339 aa8.65□□□□□ -1.02
COL6A3-201ENST00000295550 ZNF576Q9H609 170 aa8.65□□□□□ -1.02
COL6A3-201ENST00000295550 SOD3P08294 240 aa8.65□□□□□ -1.02
COL6A3-201ENST00000295550 PLA2G2FQ9BZM2 168 aa8.65□□□□□ -1.02
COL6A3-201ENST00000295550 IGKV1-8A0A0C4DH67 115 aa8.65□□□□□ -1.03
COL6A3-201ENST00000295550 TNXAQ16473 311 aa8.65□□□□□ -1.03
COL6A3-201ENST00000295550 IFI6P09912 130 aa8.65□□□□□ -1.03
COL6A3-201ENST00000295550 FAM169BQ8N8A8 192 aa8.65□□□□□ -1.03
COL6A3-201ENST00000295550 STXBP6Q8NFX7 210 aa8.65□□□□□ -1.03
COL6A3-201ENST00000295550 OR5M9Q8NGP3 310 aa8.65□□□□□ -1.03
COL6A3-201ENST00000295550 NKX2-6A6NCS4 301 aa8.65□□□□□ -1.03
COL6A3-201ENST00000295550 PTP4A3O75365 173 aa8.65□□□□□ -1.03
COL6A3-201ENST00000295550 MFRPQ9BY79 579 aa8.65□□□□□ -1.03
COL6A3-201ENST00000295550 CBLN4Q9NTU7 201 aa8.65□□□□□ -1.03
COL6A3-201ENST00000295550 MTCH2Q9Y6C9 303 aa8.65□□□□□ -1.03
COL6A3-201ENST00000295550 LINC01565O15544 149 aa8.64□□□□□ -1.03
COL6A3-201ENST00000295550 PPIHO43447 177 aaKnown RBP8.64□□□□□ -1.03
COL6A3-201ENST00000295550 DNAL4O96015 105 aa8.64□□□□□ -1.03
COL6A3-201ENST00000295550 PEBP1P30086 187 aaKnown RBP8.64□□□□□ -1.03
COL6A3-201ENST00000295550 HFEQ30201 348 aa8.64□□□□□ -1.03
COL6A3-201ENST00000295550 ZNF418Q8TF45 676 aaPredicted RBP8.64□□□□□ -1.03
COL6A3-201ENST00000295550 CDC42EP3Q9UKI2 254 aa8.64□□□□□ -1.03
COL6A3-201ENST00000295550 RAXQ9Y2V3 346 aa8.64□□□□□ -1.03
COL6A3-201ENST00000295550 PPP1CCP36873 323 aaKnown RBP8.64□□□□□ -1.03
COL6A3-201ENST00000295550 MPLP40238 635 aa8.64□□□□□ -1.03
COL6A3-201ENST00000295550 ZNF83P51522 516 aa8.64□□□□□ -1.03
COL6A3-201ENST00000295550 EPPINO95925 133 aa8.64□□□□□ -1.03
COL6A3-201ENST00000295550 MT-CO3P00414 261 aa8.64□□□□□ -1.03
COL6A3-201ENST00000295550 OR13G1Q8NGZ3 307 aa8.64□□□□□ -1.03
COL6A3-201ENST00000295550 ZNF519Q8TB69 540 aa8.64□□□□□ -1.03
COL6A3-201ENST00000295550 ASCL3Q9NQ33 180 aa8.64□□□□□ -1.03
COL6A3-201ENST00000295550 A0A1B0GU03 582 aa8.64□□□□□ -1.03
COL6A3-201ENST00000295550 OR4C45A6NMZ5 311 aa8.64□□□□□ -1.03
COL6A3-201ENST00000295550 AMY1AP04745 511 aa8.64□□□□□ -1.03
COL6A3-201ENST00000295550 MUC1P15941 1255 aaPredicted RBP8.64□□□□□ -1.03
COL6A3-201ENST00000295550 OTX1P32242 354 aaPredicted RBP8.64□□□□□ -1.03
COL6A3-201ENST00000295550 PSG6Q00889 435 aa8.64□□□□□ -1.03
COL6A3-201ENST00000295550 ADAD2Q8NCV1 583 aaKnown RBP8.64□□□□□ -1.03
COL6A3-201ENST00000295550 TMSB15BA0A087X1C1 80 aa8.64□□□□□ -1.03
COL6A3-201ENST00000295550 DHHO43323 396 aa8.64□□□□□ -1.03
COL6A3-201ENST00000295550 FUT5Q11128 374 aa8.64□□□□□ -1.03
COL6A3-201ENST00000295550 OR4C13Q8NGP0 309 aa8.64□□□□□ -1.03
COL6A3-201ENST00000295550 WDR13Q9H1Z4 485 aa8.64□□□□□ -1.03
COL6A3-201ENST00000295550 MRPS16Q9Y3D3 137 aaKnown RBP8.64□□□□□ -1.03
COL6A3-201ENST00000295550 EIF3GO75821 320 aaKnown RBP eCLIP8.64□□□□□ -1.03
COL6A3-201ENST00000295550 KIR3DL2P43630 455 aa8.64□□□□□ -1.03
COL6A3-201ENST00000295550 SPANXN1Q5VSR9 72 aa8.64□□□□□ -1.03
COL6A3-201ENST00000295550 FAM219AQ8IW50 185 aa8.64□□□□□ -1.03
COL6A3-201ENST00000295550 TMEM183AQ8IXX5 376 aa8.64□□□□□ -1.03
COL6A3-201ENST00000295550 TICRRQ7Z2Z1 1910 aa8.64□□□□□ -1.03
COL6A3-201ENST00000295550 KBTBD11O94819 623 aa8.64□□□□□ -1.03
COL6A3-201ENST00000295550 OR8I2Q8N0Y5 310 aa8.64□□□□□ -1.03
COL6A3-201ENST00000295550 GAPTQ8N292 157 aa8.64□□□□□ -1.03
COL6A3-201ENST00000295550 VSTM2AQ8TAG5 236 aa8.64□□□□□ -1.03
COL6A3-201ENST00000295550 MRGPRFQ96AM1 343 aa8.64□□□□□ -1.03
COL6A3-201ENST00000295550 SMDT1Q9H4I9 107 aa8.64□□□□□ -1.03
COL6A3-201ENST00000295550 BEX4Q9NWD9 120 aaPredicted RBP8.64□□□□□ -1.03
COL6A3-201ENST00000295550 COX7A1P24310 79 aa8.64□□□□□ -1.03
COL6A3-201ENST00000295550 PMELP40967 661 aa8.64□□□□□ -1.03
COL6A3-201ENST00000295550 TMEM50BP56557 158 aa8.64□□□□□ -1.03
COL6A3-201ENST00000295550 MRPL30Q8TCC3 161 aaKnown RBP8.64□□□□□ -1.03
COL6A3-201ENST00000295550 hADV38S2A0JD32 116 aa8.63□□□□□ -1.03
COL6A3-201ENST00000295550 SHISA8B8ZZ34 492 aa8.63□□□□□ -1.03
COL6A3-201ENST00000295550 FAM157AC9JC47 383 aa8.63□□□□□ -1.03
COL6A3-201ENST00000295550 C3orf80F5H4A9 247 aa8.63□□□□□ -1.03
COL6A3-201ENST00000295550 PHF7Q9BWX1 381 aaPredicted RBP8.63□□□□□ -1.03
COL6A3-201ENST00000295550 HLA-DQA1P01909 254 aa8.63□□□□□ -1.03
COL6A3-201ENST00000295550 KLK2P20151 261 aa8.63□□□□□ -1.03
COL6A3-201ENST00000295550 FZD5Q13467 585 aa8.63□□□□□ -1.03
COL6A3-201ENST00000295550 PMCHL1Q16048 86 aa8.63□□□□□ -1.03
COL6A3-201ENST00000295550 CADM4Q8NFZ8 388 aa8.63□□□□□ -1.03
COL6A3-201ENST00000295550 OR4X1Q8NH49 305 aa8.63□□□□□ -1.03
COL6A3-201ENST00000295550 LRRC29Q8WV35 223 aa8.63□□□□□ -1.03
COL6A3-201ENST00000295550 MEX3AA1L020 520 aaKnown RBP8.63□□□□□ -1.03
COL6A3-201ENST00000295550 KCNAB3O43448 404 aa8.63□□□□□ -1.03
COL6A3-201ENST00000295550 PNPLA5Q7Z6Z6 429 aaPredicted RBP8.63□□□□□ -1.03
COL6A3-201ENST00000295550 CFHR5Q9BXR6 569 aa8.63□□□□□ -1.03
COL6A3-201ENST00000295550 FAM206AQ9NX38 181 aa8.63□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms