RNA–Protein interactions for RNA: ENST00000274030.10

USP53-201, Transcript of ubiquitin specific peptidase 53, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP53, Length 5,936 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-201ENST00000274030 CD82P27701 267 aa9.93□□□□□ -0.82
USP53-201ENST00000274030 LIMS1P48059 325 aa9.93□□□□□ -0.82
USP53-201ENST00000274030 ELOBQ15370 118 aa9.93□□□□□ -0.82
USP53-201ENST00000274030 CLPPQ16740 277 aaPredicted RBP9.93□□□□□ -0.82
USP53-201ENST00000274030 SNAI3Q3KNW1 292 aa9.93□□□□□ -0.82
USP53-201ENST00000274030 MRGPRGQ86SM5 289 aa9.93□□□□□ -0.82
USP53-201ENST00000274030 ZMAT5Q9UDW3 170 aaKnown RBP9.93□□□□□ -0.82
USP53-201ENST00000274030 ELF5Q9UKW6 265 aaPredicted RBP9.93□□□□□ -0.82
USP53-201ENST00000274030 HLA-DQB1P01920 261 aa9.92□□□□□ -0.82
USP53-201ENST00000274030 NGFRP08138 427 aa9.92□□□□□ -0.82
USP53-201ENST00000274030 ANAPC16Q96DE5 110 aa9.92□□□□□ -0.82
USP53-201ENST00000274030 ZNF714Q96N38 554 aa9.92□□□□□ -0.82
USP53-201ENST00000274030 MRPS18AQ9NVS2 196 aaKnown RBP9.92□□□□□ -0.82
USP53-201ENST00000274030 KCNE5Q9UJ90 142 aa9.92□□□□□ -0.82
USP53-201ENST00000274030 HS3ST3B1Q9Y662 390 aa9.92□□□□□ -0.82
USP53-201ENST00000274030 TRBV23-1A0A0A0MS06 115 aa9.92□□□□□ -0.82
USP53-201ENST00000274030 LOXL3P58215 753 aa9.92□□□□□ -0.82
USP53-201ENST00000274030 ZP4Q12836 540 aa9.92□□□□□ -0.82
USP53-201ENST00000274030 C16orf82Q7Z2V1 217 aa9.92□□□□□ -0.82
USP53-201ENST00000274030 DOLPP1Q86YN1 238 aa9.92□□□□□ -0.82
USP53-201ENST00000274030 LEAP2Q969E1 77 aa9.92□□□□□ -0.82
USP53-201ENST00000274030 CHODLQ9H9P2 273 aa9.92□□□□□ -0.82
USP53-201ENST00000274030 SCN2AQ99250 2005 aa9.92□□□□□ -0.82
USP53-201ENST00000274030 GREM1O60565 184 aa9.92□□□□□ -0.82
USP53-201ENST00000274030 CXorf1O96002 111 aa9.92□□□□□ -0.82
USP53-201ENST00000274030 RIGQ13278 110 aa9.92□□□□□ -0.82
USP53-201ENST00000274030 SNRNP40Q96DI7 357 aaKnown RBP9.92□□□□□ -0.82
USP53-201ENST00000274030 PACRGQ96M98 296 aaPredicted RBP9.92□□□□□ -0.82
USP53-201ENST00000274030 RSPO4Q2I0M5 234 aaPredicted RBP9.92□□□□□ -0.82
USP53-201ENST00000274030 SLC25A53Q5H9E4 307 aa9.92□□□□□ -0.82
USP53-201ENST00000274030 ZNF841Q6ZN19 808 aa9.92□□□□□ -0.82
USP53-201ENST00000274030 ANGPTL4Q9BY76 406 aa9.92□□□□□ -0.82
USP53-201ENST00000274030 PPP1R3EQ9H7J1 279 aa9.92□□□□□ -0.82
USP53-201ENST00000274030 LYRM2Q9NU23 88 aaPredicted RBP9.92□□□□□ -0.82
USP53-201ENST00000274030 TMEM74BQ9NUR3 256 aa9.92□□□□□ -0.82
USP53-201ENST00000274030 NAT2P11245 290 aa9.92□□□□□ -0.82
USP53-201ENST00000274030 ZNF107Q9UII5 783 aaPredicted RBP9.92□□□□□ -0.82
USP53-201ENST00000274030 CTXND1A0A1B0GTU2 59 aa9.91□□□□□ -0.82
USP53-201ENST00000274030 SMPD2O60906 423 aa9.91□□□□□ -0.82
USP53-201ENST00000274030 COL4A1P02462 1669 aa9.91□□□□□ -0.82
USP53-201ENST00000274030 A0A0U1RQV5 110 aa9.91□□□□□ -0.82
USP53-201ENST00000274030 OR10J1P30954 320 aa9.91□□□□□ -0.82
USP53-201ENST00000274030 MEOX2P50222 304 aa9.91□□□□□ -0.82
USP53-201ENST00000274030 ZBTB34Q8NCN2 500 aa9.91□□□□□ -0.82
USP53-201ENST00000274030 GUCD1Q96NT3 240 aa9.91□□□□□ -0.82
USP53-201ENST00000274030 TNFSF18Q9UNG2 199 aa9.91□□□□□ -0.82
USP53-201ENST00000274030 EP300Q09472 2414 aaPredicted RBP9.91□□□□□ -0.82
USP53-201ENST00000274030 MPV17P39210 176 aa9.91□□□□□ -0.82
USP53-201ENST00000274030 FGF12P61328 243 aa9.91□□□□□ -0.82
USP53-201ENST00000274030 PAXXQ9BUH6 204 aa9.91□□□□□ -0.82
USP53-201ENST00000274030 TMEM191AQ9H0A3 160 aa9.91□□□□□ -0.82
USP53-201ENST00000274030 IL17BQ9UHF5 180 aa9.91□□□□□ -0.82
USP53-201ENST00000274030 MFSD2BA6NFX1 497 aa9.91□□□□□ -0.82
USP53-201ENST00000274030 MGST3O14880 152 aa9.91□□□□□ -0.82
USP53-201ENST00000274030 CYB5R3P00387 301 aaPredicted RBP9.91□□□□□ -0.82
USP53-201ENST00000274030 CXCL2P19875 107 aa9.91□□□□□ -0.82
USP53-201ENST00000274030 CEBPEQ15744 281 aa9.91□□□□□ -0.82
USP53-201ENST00000274030 CXorf66Q5JRM2 361 aaPredicted RBP9.91□□□□□ -0.82
USP53-201ENST00000274030 SPANXN1Q5VSR9 72 aa9.91□□□□□ -0.82
USP53-201ENST00000274030 CHAC2Q8WUX2 184 aa9.91□□□□□ -0.82
USP53-201ENST00000274030 KCNK17Q96T54 332 aa9.91□□□□□ -0.82
USP53-201ENST00000274030 CISD1Q9NZ45 108 aaKnown RBP9.91□□□□□ -0.82
USP53-201ENST00000274030 LOC102724200A0A096LPH7 203 aaPredicted RBP9.91□□□□□ -0.82
USP53-201ENST00000274030 C5orf52A6NGY3 159 aa9.91□□□□□ -0.82
USP53-201ENST00000274030 PDE6DO43924 150 aa9.91□□□□□ -0.82
USP53-201ENST00000274030 KHDC3LQ587J8 217 aa9.91□□□□□ -0.82
USP53-201ENST00000274030 RTN4RQ9BZR6 473 aa9.91□□□□□ -0.82
USP53-201ENST00000274030 CNOT1A5YKK6 2376 aaKnown RBP9.9□□□□□ -0.82
USP53-201ENST00000274030 HPRT1P00492 218 aa9.9□□□□□ -0.82
USP53-201ENST00000274030 PGA5P0DJD9 388 aa9.9□□□□□ -0.82
USP53-201ENST00000274030 LINC00596Q86U02 117 aa9.9□□□□□ -0.82
USP53-201ENST00000274030 CYB561D1Q8N8Q1 229 aa9.9□□□□□ -0.82
USP53-201ENST00000274030 MAP1LC3CQ9BXW4 147 aa9.9□□□□□ -0.82
USP53-201ENST00000274030 HIGD1AQ9Y241 93 aa9.9□□□□□ -0.82
USP53-201ENST00000274030 IGKV3D-15A0A087WSY6 115 aa9.9□□□□□ -0.82
USP53-201ENST00000274030 IGKV3-15P01624 115 aa9.9□□□□□ -0.82
USP53-201ENST00000274030 RPL27AP46776 148 aaKnown RBP9.9□□□□□ -0.82
USP53-201ENST00000274030 RPL24P83731 157 aaKnown RBP9.9□□□□□ -0.82
USP53-201ENST00000274030 GABRA6Q16445 453 aa9.9□□□□□ -0.82
USP53-201ENST00000274030 OR5AU1Q8NGC0 362 aa9.9□□□□□ -0.82
USP53-201ENST00000274030 SAP25Q8TEE9 199 aa9.9□□□□□ -0.82
USP53-201ENST00000274030 BET1LQ9NYM9 111 aa9.9□□□□□ -0.82
USP53-201ENST00000274030 PAM16Q9Y3D7 125 aa9.9□□□□□ -0.82
USP53-201ENST00000274030 A0A1W2PQM1 296 aa9.9□□□□□ -0.82
USP53-201ENST00000274030 PF4V1P10720 104 aa9.9□□□□□ -0.82
USP53-201ENST00000274030 FCARP24071 287 aa9.9□□□□□ -0.82
USP53-201ENST00000274030 RHOVQ96L33 236 aa9.9□□□□□ -0.82
USP53-201ENST00000274030 LHFPL6Q9Y693 200 aa9.9□□□□□ -0.82
USP53-201ENST00000274030 PXMP4Q9Y6I8 212 aa9.9□□□□□ -0.82
USP53-201ENST00000274030 CEACAM18A8MTB9 384 aa9.9□□□□□ -0.83
USP53-201ENST00000274030 APCSP02743 223 aa9.9□□□□□ -0.83
USP53-201ENST00000274030 ERGP11308 486 aa9.9□□□□□ -0.83
USP53-201ENST00000274030 ABCA3Q99758 1704 aa9.89□□□□□ -0.83
USP53-201ENST00000274030 IGLV1-36A0A0B4J1U3 117 aa9.89□□□□□ -0.83
USP53-201ENST00000274030 CORTO00230 105 aa9.89□□□□□ -0.83
USP53-201ENST00000274030 HYPMO75409 117 aa9.89□□□□□ -0.83
USP53-201ENST00000274030 SEC11BP0C7V7 166 aa9.89□□□□□ -0.83
USP53-201ENST00000274030 SSTR5P35346 364 aa9.89□□□□□ -0.83
USP53-201ENST00000274030 MFAP2P55001 183 aa9.89□□□□□ -0.83
USP53-201ENST00000274030 ROM1Q03395 351 aa9.89□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms