RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 JMJD7P0C870 316 aa4.08□□□□□ -1.76
SCN1A-220ENST00000641603 FAM157CP0CG43 387 aa4.08□□□□□ -1.76
SCN1A-220ENST00000641603 COL8A1P27658 744 aa4.08□□□□□ -1.76
SCN1A-220ENST00000641603 PPP1CCP36873 323 aaKnown RBP4.08□□□□□ -1.76
SCN1A-220ENST00000641603 DNM1P46Q6ZS02 220 aa4.08□□□□□ -1.76
SCN1A-220ENST00000641603 OR11H1Q8NG94 326 aa4.08□□□□□ -1.76
SCN1A-220ENST00000641603 OR11H2Q8NH07 326 aa4.08□□□□□ -1.76
SCN1A-220ENST00000641603 ZNF519Q8TB69 540 aa4.08□□□□□ -1.76
SCN1A-220ENST00000641603 COX11Q9Y6N1 276 aa4.08□□□□□ -1.76
SCN1A-220ENST00000641603 TRAV8-7A0A075B6U6 113 aa4.08□□□□□ -1.76
SCN1A-220ENST00000641603 SERTM2A0A1B0GWG4 89 aa4.08□□□□□ -1.76
SCN1A-220ENST00000641603 GHRHP01286 108 aa4.08□□□□□ -1.76
SCN1A-220ENST00000641603 FOLR3P41439 243 aa4.08□□□□□ -1.76
SCN1A-220ENST00000641603 TNFRSF4P43489 277 aa4.08□□□□□ -1.76
SCN1A-220ENST00000641603 SEC13P55735 322 aa4.08□□□□□ -1.76
SCN1A-220ENST00000641603 MGAT2Q10469 447 aa4.08□□□□□ -1.76
SCN1A-220ENST00000641603 ZNF611Q8N823 705 aa4.08□□□□□ -1.76
SCN1A-220ENST00000641603 TMEM186Q96B77 213 aa4.08□□□□□ -1.76
SCN1A-220ENST00000641603 NKX2-6A6NCS4 301 aa4.08□□□□□ -1.76
SCN1A-220ENST00000641603 PSMB5P28074 263 aa4.08□□□□□ -1.76
SCN1A-220ENST00000641603 A0A0G2JMM0 328 aa4.08□□□□□ -1.76
SCN1A-220ENST00000641603 A0A1W2PPB8 328 aa4.08□□□□□ -1.76
SCN1A-220ENST00000641603 KIR3DP1A8MWS1 328 aa4.08□□□□□ -1.76
SCN1A-220ENST00000641603 C9JCJ5 164 aa4.08□□□□□ -1.76
SCN1A-220ENST00000641603 RPL36A-HNRNPH2H7BZ11 118 aa4.08□□□□□ -1.76
SCN1A-220ENST00000641603 ATG4DQ86TL0 474 aaPredicted RBP4.08□□□□□ -1.76
SCN1A-220ENST00000641603 ZNF835Q9Y2P0 537 aa4.08□□□□□ -1.76
SCN1A-220ENST00000641603 RP1L1Q8IWN7 2480 aaPredicted RBP4.08□□□□□ -1.76
SCN1A-220ENST00000641603 SRIP30626 198 aa4.08□□□□□ -1.76
SCN1A-220ENST00000641603 NOGQ13253 232 aa4.08□□□□□ -1.76
SCN1A-220ENST00000641603 CLEC12BQ2HXU8 276 aa4.08□□□□□ -1.76
SCN1A-220ENST00000641603 RFLNAQ6ZTI6 216 aa4.08□□□□□ -1.76
SCN1A-220ENST00000641603 MRPL13Q9BYD1 178 aaKnown RBP4.08□□□□□ -1.76
SCN1A-220ENST00000641603 MRPL16Q9NX20 251 aaKnown RBP4.08□□□□□ -1.76
SCN1A-220ENST00000641603 FAM90A9PA6NNJ1 464 aa4.08□□□□□ -1.76
SCN1A-220ENST00000641603 K7N7A8 449 aa4.08□□□□□ -1.76
SCN1A-220ENST00000641603 LRRC75BQ2VPJ9 315 aa4.08□□□□□ -1.76
SCN1A-220ENST00000641603 BIVMQ86UB2 503 aa4.08□□□□□ -1.76
SCN1A-220ENST00000641603 ADAD2Q8NCV1 583 aaKnown RBP4.08□□□□□ -1.76
SCN1A-220ENST00000641603 NRSN2Q9GZP1 204 aa4.08□□□□□ -1.76
SCN1A-220ENST00000641603 MEGF9Q9H1U4 602 aa4.08□□□□□ -1.76
SCN1A-220ENST00000641603 C5orf66Q9H5L9 145 aa4.08□□□□□ -1.76
SCN1A-220ENST00000641603 GPR27Q9NS67 375 aa4.08□□□□□ -1.76
SCN1A-220ENST00000641603 PHLPP1O60346 1717 aa4.08□□□□□ -1.76
SCN1A-220ENST00000641603 NHSL1Q5SYE7 1610 aa4.08□□□□□ -1.76
SCN1A-220ENST00000641603 OR4C46A6NHA9 309 aa4.08□□□□□ -1.76
SCN1A-220ENST00000641603 CER1O95813 267 aa4.08□□□□□ -1.76
SCN1A-220ENST00000641603 OR9G9P0C7N8 305 aa4.08□□□□□ -1.76
SCN1A-220ENST00000641603 SSR4P51571 173 aa4.08□□□□□ -1.76
SCN1A-220ENST00000641603 LYZL2Q7Z4W2 148 aa4.08□□□□□ -1.76
SCN1A-220ENST00000641603 HIST1H4GQ99525 98 aa4.08□□□□□ -1.76
SCN1A-220ENST00000641603 MYADML2A6NDP7 307 aa4.08□□□□□ -1.76
SCN1A-220ENST00000641603 CFAP161Q6P656 301 aa4.08□□□□□ -1.76
SCN1A-220ENST00000641603 PNPLA5Q7Z6Z6 429 aaPredicted RBP4.08□□□□□ -1.76
SCN1A-220ENST00000641603 SPEM1Q8N4L4 309 aa4.08□□□□□ -1.76
SCN1A-220ENST00000641603 PSG11Q9UQ72 335 aa4.08□□□□□ -1.76
SCN1A-220ENST00000641603 A0A1B0GWB2 263 aa4.08□□□□□ -1.76
SCN1A-220ENST00000641603 A0A1W2PPC4 97 aa4.08□□□□□ -1.76
SCN1A-220ENST00000641603 TMEM14DPA8MWL7 114 aa4.08□□□□□ -1.76
SCN1A-220ENST00000641603 CEACAM6P40199 344 aa4.08□□□□□ -1.76
SCN1A-220ENST00000641603 EMP1P54849 157 aa4.08□□□□□ -1.76
SCN1A-220ENST00000641603 RUNX2Q13950 521 aa4.08□□□□□ -1.76
SCN1A-220ENST00000641603 OR10X1Q8NGY0 326 aa4.08□□□□□ -1.76
SCN1A-220ENST00000641603 RCC1LQ96I51 464 aaKnown RBP4.08□□□□□ -1.76
SCN1A-220ENST00000641603 IL36GQ9NZH8 169 aa4.08□□□□□ -1.76
SCN1A-220ENST00000641603 TRAV14DV4A0A0A6YYC5 116 aa4.07□□□□□ -1.76
SCN1A-220ENST00000641603 PLPP3O14495 311 aa4.07□□□□□ -1.76
SCN1A-220ENST00000641603 CA1P00915 261 aaPredicted RBP4.07□□□□□ -1.76
SCN1A-220ENST00000641603 KLK2P20151 261 aa4.07□□□□□ -1.76
SCN1A-220ENST00000641603 LY6G6FQ5SQ64 297 aa4.07□□□□□ -1.76
SCN1A-220ENST00000641603 MARCH3Q86UD3 253 aa4.07□□□□□ -1.76
SCN1A-220ENST00000641603 ARPC1AQ92747 370 aa4.07□□□□□ -1.76
SCN1A-220ENST00000641603 NRN1Q9NPD7 142 aa4.07□□□□□ -1.76
SCN1A-220ENST00000641603 LTBP4Q8N2S1 1624 aa4.07□□□□□ -1.76
SCN1A-220ENST00000641603 UCP2P55851 309 aa4.07□□□□□ -1.76
SCN1A-220ENST00000641603 C16orf52Q8NHV5 167 aa4.07□□□□□ -1.76
SCN1A-220ENST00000641603 GATAD1Q8WUU5 269 aa4.07□□□□□ -1.76
SCN1A-220ENST00000641603 ASB10Q8WXI3 467 aa4.07□□□□□ -1.76
SCN1A-220ENST00000641603 CITED2Q99967 270 aaPredicted RBP4.07□□□□□ -1.76
SCN1A-220ENST00000641603 KLHDC2Q9Y2U9 406 aa4.07□□□□□ -1.76
SCN1A-220ENST00000641603 NUP98P52948 1817 aa4.07□□□□□ -1.76
SCN1A-220ENST00000641603 SIPA1L3O60292 1781 aaPredicted RBP4.07□□□□□ -1.76
SCN1A-220ENST00000641603 GJB3O75712 270 aa4.07□□□□□ -1.76
SCN1A-220ENST00000641603 CAMPP49913 170 aa4.07□□□□□ -1.76
SCN1A-220ENST00000641603 INSL4Q14641 139 aa4.07□□□□□ -1.76
SCN1A-220ENST00000641603 C10orf113Q5VZT2 155 aa4.07□□□□□ -1.76
SCN1A-220ENST00000641603 C20orf141Q9NUB4 165 aa4.07□□□□□ -1.76
SCN1A-220ENST00000641603 TMEM56-RWDD3S4R434 201 aa4.07□□□□□ -1.76
SCN1A-220ENST00000641603 LILRA5A6NI73 299 aa4.07□□□□□ -1.76
SCN1A-220ENST00000641603 B3GALT4O96024 378 aa4.07□□□□□ -1.76
SCN1A-220ENST00000641603 RAB9AP51151 201 aa4.07□□□□□ -1.76
SCN1A-220ENST00000641603 TMEM187Q14656 261 aa4.07□□□□□ -1.76
SCN1A-220ENST00000641603 RGP1Q92546 391 aaPredicted RBP4.07□□□□□ -1.76
SCN1A-220ENST00000641603 NEU1Q99519 415 aa4.07□□□□□ -1.76
SCN1A-220ENST00000641603 BARX1Q9HBU1 254 aaPredicted RBP4.07□□□□□ -1.76
SCN1A-220ENST00000641603 OOEPA6NGQ2 149 aa4.07□□□□□ -1.76
SCN1A-220ENST00000641603 HS3ST1O14792 307 aa4.07□□□□□ -1.76
SCN1A-220ENST00000641603 CD160O95971 181 aa4.07□□□□□ -1.76
SCN1A-220ENST00000641603 SP6Q3SY56 376 aa4.07□□□□□ -1.76
SCN1A-220ENST00000641603 CCSMST1Q4G0I0 132 aa4.07□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 45.9 ms