RNA–Protein interactions for RNA: ENST00000640036.1

SCN1A-218, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,131 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-218ENST00000640036 TSPOP30536 169 aa4.36□□□□□ -1.71
SCN1A-218ENST00000640036 RPS19P39019 145 aaKnown RBP4.36□□□□□ -1.71
SCN1A-218ENST00000640036 BTG1P62324 171 aa4.36□□□□□ -1.71
SCN1A-218ENST00000640036 COLCA1Q6ZS62 124 aa4.36□□□□□ -1.71
SCN1A-218ENST00000640036 ZNF683Q8IZ20 524 aa4.36□□□□□ -1.71
SCN1A-218ENST00000640036 OR8G5Q8NG78 346 aa4.36□□□□□ -1.71
SCN1A-218ENST00000640036 OR10P1Q8NGE3 313 aa4.36□□□□□ -1.71
SCN1A-218ENST00000640036 NUDT11Q96G61 164 aa4.36□□□□□ -1.71
SCN1A-218ENST00000640036 VGLL1Q99990 258 aa4.36□□□□□ -1.71
SCN1A-218ENST00000640036 TYROBPO43914 113 aa4.36□□□□□ -1.71
SCN1A-218ENST00000640036 SBK3P0C264 359 aa4.36□□□□□ -1.71
SCN1A-218ENST00000640036 CT62P0C5K7 136 aa4.36□□□□□ -1.71
SCN1A-218ENST00000640036 HIST1H1EP10412 219 aaKnown RBP4.36□□□□□ -1.71
SCN1A-218ENST00000640036 COX5AP20674 150 aa4.36□□□□□ -1.71
SCN1A-218ENST00000640036 RAB32Q13637 225 aa4.36□□□□□ -1.71
SCN1A-218ENST00000640036 SPCS2Q15005 226 aa4.36□□□□□ -1.71
SCN1A-218ENST00000640036 OLIG3Q7RTU3 272 aa4.36□□□□□ -1.71
SCN1A-218ENST00000640036 OR2T35Q8NGX2 323 aa4.36□□□□□ -1.71
SCN1A-218ENST00000640036 ARL2-SNX15V9GYD0 113 aa4.36□□□□□ -1.71
SCN1A-218ENST00000640036 NCOA6Q14686 2063 aaPredicted RBP4.36□□□□□ -1.71
SCN1A-218ENST00000640036 IGF2RP11717 2491 aa4.36□□□□□ -1.71
SCN1A-218ENST00000640036 C17orf100A8MU93 164 aa4.36□□□□□ -1.71
SCN1A-218ENST00000640036 UMAD1C9J7I0 102 aa4.36□□□□□ -1.71
SCN1A-218ENST00000640036 ARPC5O15511 151 aa4.36□□□□□ -1.71
SCN1A-218ENST00000640036 GPX2P18283 190 aa4.36□□□□□ -1.71
SCN1A-218ENST00000640036 COL8A1P27658 744 aa4.36□□□□□ -1.71
SCN1A-218ENST00000640036 OR2G6Q5TZ20 316 aa4.36□□□□□ -1.71
SCN1A-218ENST00000640036 FAM71F2Q6NXP2 309 aa4.36□□□□□ -1.71
SCN1A-218ENST00000640036 NFAM1Q8NET5 270 aaPredicted RBP4.36□□□□□ -1.71
SCN1A-218ENST00000640036 RAB24Q969Q5 203 aa4.36□□□□□ -1.71
SCN1A-218ENST00000640036 VWCEQ96DN2 955 aa4.36□□□□□ -1.71
SCN1A-218ENST00000640036 REG4Q9BYZ8 158 aa4.36□□□□□ -1.71
SCN1A-218ENST00000640036 SLC6A13Q9NSD5 602 aa4.36□□□□□ -1.71
SCN1A-218ENST00000640036 ANKHD1Q8IWZ3 2542 aaKnown RBP4.35□□□□□ -1.71
SCN1A-218ENST00000640036 MEX3AA1L020 520 aaKnown RBP4.35□□□□□ -1.71
SCN1A-218ENST00000640036 CA11O75493 328 aa4.35□□□□□ -1.71
SCN1A-218ENST00000640036 IGHV3-13P01766 116 aa4.35□□□□□ -1.71
SCN1A-218ENST00000640036 IGHV3-7P01780 117 aa4.35□□□□□ -1.71
SCN1A-218ENST00000640036 TRGV3P03979 118 aa4.35□□□□□ -1.71
SCN1A-218ENST00000640036 RPS25P62851 125 aaKnown RBP4.35□□□□□ -1.71
SCN1A-218ENST00000640036 DMRTC1Q5HYR2 192 aa4.35□□□□□ -1.71
SCN1A-218ENST00000640036 NCCRP1Q6ZVX7 275 aaPredicted RBP4.35□□□□□ -1.71
SCN1A-218ENST00000640036 C18orf12Q96KH6 178 aa4.35□□□□□ -1.71
SCN1A-218ENST00000640036 C20orf27Q9GZN8 174 aa4.35□□□□□ -1.71
SCN1A-218ENST00000640036 MRPS18CQ9Y3D5 142 aaKnown RBP4.35□□□□□ -1.71
SCN1A-218ENST00000640036 ANKRD20A5PA0PJZ0 165 aa4.35□□□□□ -1.71
SCN1A-218ENST00000640036 CHST1O43916 411 aa4.35□□□□□ -1.71
SCN1A-218ENST00000640036 MUC1P15941 1255 aaPredicted RBP4.35□□□□□ -1.71
SCN1A-218ENST00000640036 AGAP20933 346 aa4.35□□□□□ -1.71
SCN1A-218ENST00000640036 COMPP49747 757 aaPredicted RBP4.35□□□□□ -1.71
SCN1A-218ENST00000640036 RELQ04864 619 aaPredicted RBP4.35□□□□□ -1.71
SCN1A-218ENST00000640036 CBLN3Q6UW01 205 aa4.35□□□□□ -1.71
SCN1A-218ENST00000640036 C9orf106Q8NAJ2 232 aa4.35□□□□□ -1.71
SCN1A-218ENST00000640036 GTF3AQ92664 365 aaKnown RBP4.35□□□□□ -1.71
SCN1A-218ENST00000640036 GHSRQ92847 366 aa4.35□□□□□ -1.71
SCN1A-218ENST00000640036 FCRL1Q96LA6 429 aa4.35□□□□□ -1.71
SCN1A-218ENST00000640036 WDR13Q9H1Z4 485 aa4.35□□□□□ -1.71
SCN1A-218ENST00000640036 VSIG4Q9Y279 399 aa4.35□□□□□ -1.71
SCN1A-218ENST00000640036 RAB29O14966 203 aa4.35□□□□□ -1.71
SCN1A-218ENST00000640036 FOXL2P58012 376 aa4.35□□□□□ -1.71
SCN1A-218ENST00000640036 LRRC75BQ2VPJ9 315 aa4.35□□□□□ -1.71
SCN1A-218ENST00000640036 STAC2Q6ZMT1 411 aa4.35□□□□□ -1.71
SCN1A-218ENST00000640036 LINC00299Q6ZSB3 139 aa4.35□□□□□ -1.71
SCN1A-218ENST00000640036 PNKDQ8N490 385 aa4.35□□□□□ -1.71
SCN1A-218ENST00000640036 AMER3Q8N944 861 aa4.35□□□□□ -1.71
SCN1A-218ENST00000640036 OR52N4Q8NGI2 321 aa4.35□□□□□ -1.71
SCN1A-218ENST00000640036 YIPF5Q969M3 257 aa4.35□□□□□ -1.71
SCN1A-218ENST00000640036 FAM3DQ96BQ1 224 aa4.35□□□□□ -1.71
SCN1A-218ENST00000640036 MRPL37Q9BZE1 423 aaKnown RBP4.35□□□□□ -1.71
SCN1A-218ENST00000640036 PSPNO60542 156 aa4.35□□□□□ -1.71
SCN1A-218ENST00000640036 NGFRP08138 427 aa4.35□□□□□ -1.71
SCN1A-218ENST00000640036 WNT3P56703 355 aa4.35□□□□□ -1.71
SCN1A-218ENST00000640036 PJVKQ0ZLH3 352 aa4.35□□□□□ -1.71
SCN1A-218ENST00000640036 TMEM30BQ3MIR4 351 aa4.35□□□□□ -1.71
SCN1A-218ENST00000640036 TMUB2Q71RG4 321 aa4.35□□□□□ -1.71
SCN1A-218ENST00000640036 DTX2Q86UW9 622 aa4.35□□□□□ -1.71
SCN1A-218ENST00000640036 OR5M8Q8NGP6 311 aa4.35□□□□□ -1.71
SCN1A-218ENST00000640036 OR4A5Q8NH83 315 aa4.35□□□□□ -1.71
SCN1A-218ENST00000640036 EEF1AKMT3Q96AZ1 226 aa4.35□□□□□ -1.71
SCN1A-218ENST00000640036 SCARF2Q96GP6 870 aaPredicted RBP4.35□□□□□ -1.71
SCN1A-218ENST00000640036 PLAC1Q9HBJ0 212 aa4.35□□□□□ -1.71
SCN1A-218ENST00000640036 NRIP3Q9NQ35 241 aa4.35□□□□□ -1.71
SCN1A-218ENST00000640036 MED9Q9NWA0 146 aa4.35□□□□□ -1.71
SCN1A-218ENST00000640036 RASL12Q9NYN1 266 aa4.35□□□□□ -1.71
SCN1A-218ENST00000640036 FN1P02751 2386 aaKnown RBP4.35□□□□□ -1.71
SCN1A-218ENST00000640036 PSMB11A5LHX3 300 aa4.35□□□□□ -1.71
SCN1A-218ENST00000640036 H0Y980 276 aa4.35□□□□□ -1.71
SCN1A-218ENST00000640036 ST8SIA3O43173 380 aa4.35□□□□□ -1.71
SCN1A-218ENST00000640036 NUDT3O95989 172 aa4.35□□□□□ -1.71
SCN1A-218ENST00000640036 HPXP02790 462 aa4.35□□□□□ -1.71
SCN1A-218ENST00000640036 SHC1P29353 583 aa4.35□□□□□ -1.71
SCN1A-218ENST00000640036 PRRC2AP48634 2157 aaKnown RBP4.35□□□□□ -1.71
SCN1A-218ENST00000640036 PRSS12P56730 875 aa4.35□□□□□ -1.71
SCN1A-218ENST00000640036 BAK1Q16611 211 aa4.35□□□□□ -1.71
SCN1A-218ENST00000640036 H3F3CQ6NXT2 135 aa4.35□□□□□ -1.71
SCN1A-218ENST00000640036 TBPL2Q6SJ96 375 aa4.35□□□□□ -1.71
SCN1A-218ENST00000640036 C6orf201Q7Z4U5 140 aa4.35□□□□□ -1.71
SCN1A-218ENST00000640036 LYG2Q86SG7 212 aa4.35□□□□□ -1.71
SCN1A-218ENST00000640036 OR4B1Q8NGF8 309 aa4.35□□□□□ -1.71
SCN1A-218ENST00000640036 ITLN2Q8WWU7 325 aaPredicted RBP4.35□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 58.6 ms