RNA–Protein interactions for RNA: ENST00000637038.1

SCN1A-214, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,268 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-214ENST00000637038 SOX15O60248 233 aa3.42□□□□□ -1.86
SCN1A-214ENST00000637038 UCP1P25874 307 aa3.42□□□□□ -1.86
SCN1A-214ENST00000637038 CDX1P47902 265 aaPredicted RBP3.42□□□□□ -1.86
SCN1A-214ENST00000637038 RAB11AP62491 216 aa3.42□□□□□ -1.86
SCN1A-214ENST00000637038 SERF2P84101 59 aa3.42□□□□□ -1.86
SCN1A-214ENST00000637038 NHLH2Q02577 135 aa3.42□□□□□ -1.86
SCN1A-214ENST00000637038 CATR1Q13166 79 aa3.42□□□□□ -1.86
SCN1A-214ENST00000637038 SNAI3Q3KNW1 292 aa3.42□□□□□ -1.86
SCN1A-214ENST00000637038 PIGYQ3MUY2 71 aa3.42□□□□□ -1.86
SCN1A-214ENST00000637038 TSPO2Q5TGU0 170 aa3.42□□□□□ -1.86
SCN1A-214ENST00000637038 THNSL2Q86YJ6 484 aa3.42□□□□□ -1.86
SCN1A-214ENST00000637038 SELENOHQ8IZQ5 122 aaKnown RBP3.42□□□□□ -1.86
SCN1A-214ENST00000637038 TMEM217Q8N7C4 229 aa3.42□□□□□ -1.86
SCN1A-214ENST00000637038 BHLHE23Q8NDY6 225 aa3.42□□□□□ -1.86
SCN1A-214ENST00000637038 ISOC2Q96AB3 205 aa3.42□□□□□ -1.86
SCN1A-214ENST00000637038 TMEM45BQ96B21 275 aa3.42□□□□□ -1.86
SCN1A-214ENST00000637038 FBXO17Q96EF6 278 aa3.42□□□□□ -1.86
SCN1A-214ENST00000637038 GNRHR2Q96P88 292 aa3.42□□□□□ -1.86
SCN1A-214ENST00000637038 SMOC1Q9H4F8 434 aa3.42□□□□□ -1.86
SCN1A-214ENST00000637038 GPR35Q9HC97 309 aa3.42□□□□□ -1.86
SCN1A-214ENST00000637038 ERRFI1Q9UJM3 462 aaPredicted RBP3.42□□□□□ -1.86
SCN1A-214ENST00000637038 MPC1Q9Y5U8 109 aa3.42□□□□□ -1.86
SCN1A-214ENST00000637038 TRAV1-1A0A0B4J248 108 aa3.42□□□□□ -1.86
SCN1A-214ENST00000637038 A0A1B0GV90 55 aa3.42□□□□□ -1.86
SCN1A-214ENST00000637038 PATE3B3GLJ2 98 aa3.42□□□□□ -1.86
SCN1A-214ENST00000637038 RAMP1O60894 148 aa3.42□□□□□ -1.86
SCN1A-214ENST00000637038 IFNA10P01566 189 aa3.42□□□□□ -1.86
SCN1A-214ENST00000637038 ARG1P05089 322 aa3.42□□□□□ -1.86
SCN1A-214ENST00000637038 FBP1P09467 338 aa3.42□□□□□ -1.86
SCN1A-214ENST00000637038 CCL3P10147 92 aa3.42□□□□□ -1.86
SCN1A-214ENST00000637038 CCNOP22674 350 aa3.42□□□□□ -1.86
SCN1A-214ENST00000637038 PSMB3P49720 205 aa3.42□□□□□ -1.86
SCN1A-214ENST00000637038 DLK1P80370 383 aa3.42□□□□□ -1.86
SCN1A-214ENST00000637038 PRDX4Q13162 271 aa3.42□□□□□ -1.86
SCN1A-214ENST00000637038 ATP6V1FQ16864 119 aa3.42□□□□□ -1.86
SCN1A-214ENST00000637038 MRPL14Q6P1L8 145 aaKnown RBP3.42□□□□□ -1.86
SCN1A-214ENST00000637038 KCNIP4Q6PIL6 250 aa3.42□□□□□ -1.86
SCN1A-214ENST00000637038 DTD1Q8TEA8 209 aa3.42□□□□□ -1.86
SCN1A-214ENST00000637038 PSMG3Q9BT73 122 aaPredicted RBP3.42□□□□□ -1.86
SCN1A-214ENST00000637038 Q9N2K0 584 aa3.42□□□□□ -1.86
SCN1A-214ENST00000637038 SLC7A10Q9NS82 523 aa3.42□□□□□ -1.86
SCN1A-214ENST00000637038 GNG13Q9P2W3 67 aa3.42□□□□□ -1.86
SCN1A-214ENST00000637038 TCFL5Q9UL49 500 aa3.42□□□□□ -1.86
SCN1A-214ENST00000637038 POLDIP2Q9Y2S7 368 aa3.42□□□□□ -1.86
SCN1A-214ENST00000637038 MRPS18CQ9Y3D5 142 aaKnown RBP3.42□□□□□ -1.86
SCN1A-214ENST00000637038 LAMA5O15230 3695 aa3.42□□□□□ -1.86
SCN1A-214ENST00000637038 CEP250Q9BV73 2442 aa3.42□□□□□ -1.86
SCN1A-214ENST00000637038 IGKV1D-8A0A087WSZ0 117 aa3.41□□□□□ -1.86
SCN1A-214ENST00000637038 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP3.41□□□□□ -1.86
SCN1A-214ENST00000637038 C17orf112F2Z3M2 114 aa3.41□□□□□ -1.86
SCN1A-214ENST00000637038 HMGB3O15347 200 aaKnown RBP3.41□□□□□ -1.86
SCN1A-214ENST00000637038 CYB5BO43169 146 aa3.41□□□□□ -1.86
SCN1A-214ENST00000637038 PTBP3O95758 552 aaKnown RBP3.41□□□□□ -1.86
SCN1A-214ENST00000637038 HLA-HP01893 362 aa3.41□□□□□ -1.86
SCN1A-214ENST00000637038 HOXA5P20719 270 aa3.41□□□□□ -1.86
SCN1A-214ENST00000637038 OTX2P32243 289 aa3.41□□□□□ -1.86
SCN1A-214ENST00000637038 MAS1LP35410 378 aa3.41□□□□□ -1.86
SCN1A-214ENST00000637038 PPP1CCP36873 323 aaKnown RBP3.41□□□□□ -1.86
SCN1A-214ENST00000637038 GLIPR1P48060 266 aa3.41□□□□□ -1.86
SCN1A-214ENST00000637038 CYB561P49447 251 aa3.41□□□□□ -1.86
SCN1A-214ENST00000637038 RPS23P62266 143 aaKnown RBP3.41□□□□□ -1.86
SCN1A-214ENST00000637038 GNG3P63215 75 aa3.41□□□□□ -1.86
SCN1A-214ENST00000637038 HTD2P86397 168 aa3.41□□□□□ -1.86
SCN1A-214ENST00000637038 PSG4Q00888 419 aa3.41□□□□□ -1.86
SCN1A-214ENST00000637038 ACSF3Q4G176 576 aaPredicted RBP3.41□□□□□ -1.86
SCN1A-214ENST00000637038 P4HA3Q7Z4N8 544 aa3.41□□□□□ -1.86
SCN1A-214ENST00000637038 MRGPRGQ86SM5 289 aa3.41□□□□□ -1.86
SCN1A-214ENST00000637038 YRDCQ86U90 279 aaKnown RBP3.41□□□□□ -1.86
SCN1A-214ENST00000637038 GAPTQ8N292 157 aa3.41□□□□□ -1.86
SCN1A-214ENST00000637038 OR5A2Q8NGI9 324 aa3.41□□□□□ -1.86
SCN1A-214ENST00000637038 OR52M1Q8NGK5 317 aa3.41□□□□□ -1.86
SCN1A-214ENST00000637038 LSM10Q969L4 123 aaKnown RBP3.41□□□□□ -1.86
SCN1A-214ENST00000637038 FAM210BQ96KR6 192 aa3.41□□□□□ -1.86
SCN1A-214ENST00000637038 CIB3Q96Q77 187 aaPredicted RBP3.41□□□□□ -1.86
SCN1A-214ENST00000637038 ALKBH3Q96Q83 286 aaPredicted RBP3.41□□□□□ -1.86
SCN1A-214ENST00000637038 RTL8AQ9BWD3 113 aa3.41□□□□□ -1.86
SCN1A-214ENST00000637038 MAGT1Q9H0U3 335 aa3.41□□□□□ -1.86
SCN1A-214ENST00000637038 OR51B6Q9H340 312 aa3.41□□□□□ -1.86
SCN1A-214ENST00000637038 CALHM2Q9HA72 323 aa3.41□□□□□ -1.86
SCN1A-214ENST00000637038 SEBOXQ9HB31 216 aaPredicted RBP3.41□□□□□ -1.86
SCN1A-214ENST00000637038 WFDC1Q9HC57 220 aa3.41□□□□□ -1.86
SCN1A-214ENST00000637038 SLC39A9Q9NUM3 307 aa3.41□□□□□ -1.86
SCN1A-214ENST00000637038 UFSP2Q9NUQ7 469 aa3.41□□□□□ -1.86
SCN1A-214ENST00000637038 PSENENQ9NZ42 101 aa3.41□□□□□ -1.86
SCN1A-214ENST00000637038 CISD1Q9NZ45 108 aaKnown RBP3.41□□□□□ -1.86
SCN1A-214ENST00000637038 LIPGQ9Y5X9 500 aa3.41□□□□□ -1.86
SCN1A-214ENST00000637038 ATP23Q9Y6H3 246 aa3.41□□□□□ -1.86
SCN1A-214ENST00000637038 EPG5Q9HCE0 2579 aa3.41□□□□□ -1.86
SCN1A-214ENST00000637038 TDRD6O60522 2096 aaKnown RBP3.41□□□□□ -1.86
SCN1A-214ENST00000637038 IGSF23A1L1A6 192 aa3.41□□□□□ -1.86
SCN1A-214ENST00000637038 FAM90A26D6RGX4 464 aa3.41□□□□□ -1.86
SCN1A-214ENST00000637038 G3V3Y1 287 aa3.41□□□□□ -1.86
SCN1A-214ENST00000637038 CHST1O43916 411 aa3.41□□□□□ -1.86
SCN1A-214ENST00000637038 CST7O76096 145 aa3.41□□□□□ -1.86
SCN1A-214ENST00000637038 CYB5R3P00387 301 aaPredicted RBP3.41□□□□□ -1.86
SCN1A-214ENST00000637038 SRP19P09132 144 aaKnown RBP3.41□□□□□ -1.86
SCN1A-214ENST00000637038 OR8U8P0C7N1 319 aa3.41□□□□□ -1.86
SCN1A-214ENST00000637038 GLI4P10075 376 aa3.41□□□□□ -1.86
SCN1A-214ENST00000637038 BCL2P10415 239 aa3.41□□□□□ -1.86
SCN1A-214ENST00000637038 DAOP14920 347 aa3.41□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms