RNA–Protein interactions for RNA: ENST00000636228.1

CLN3-246, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,224 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-246ENST00000636228 OR11H1Q8NG94 326 aa12.6□□□□□ -0.39
CLN3-246ENST00000636228 OR8H1Q8NGG4 311 aa12.6□□□□□ -0.39
CLN3-246ENST00000636228 OR52L2PQ8NGH6 319 aa12.6□□□□□ -0.39
CLN3-246ENST00000636228 C4orf3Q8WVX3 66 aa12.6□□□□□ -0.39
CLN3-246ENST00000636228 RCC2Q9P258 522 aaKnown RBP12.6□□□□□ -0.39
CLN3-246ENST00000636228 ZNF107Q9UII5 783 aaPredicted RBP12.6□□□□□ -0.39
CLN3-246ENST00000636228 G3V318 75 aa12.59□□□□□ -0.39
CLN3-246ENST00000636228 GPX5O75715 221 aa12.59□□□□□ -0.39
CLN3-246ENST00000636228 MAS1P04201 325 aa12.59□□□□□ -0.39
CLN3-246ENST00000636228 IGF1P05019 195 aa12.59□□□□□ -0.39
CLN3-246ENST00000636228 PSMB8P28062 276 aa12.59□□□□□ -0.39
CLN3-246ENST00000636228 ZNF137PP52743 207 aa12.59□□□□□ -0.39
CLN3-246ENST00000636228 LSAMPQ13449 338 aa12.59□□□□□ -0.39
CLN3-246ENST00000636228 MMDQ15546 238 aa12.59□□□□□ -0.39
CLN3-246ENST00000636228 Q499Y3 187 aa12.59□□□□□ -0.39
CLN3-246ENST00000636228 PQLC1Q8N2U9 271 aa12.59□□□□□ -0.39
CLN3-246ENST00000636228 ZNF555Q8NEP9 628 aa12.59□□□□□ -0.39
CLN3-246ENST00000636228 OR14A2Q96R54 314 aa12.59□□□□□ -0.39
CLN3-246ENST00000636228 SELENOIQ9C0D9 397 aa12.59□□□□□ -0.39
CLN3-246ENST00000636228 GNB4Q9HAV0 340 aa12.59□□□□□ -0.39
CLN3-246ENST00000636228 TAF9BQ9HBM6 251 aa12.59□□□□□ -0.39
CLN3-246ENST00000636228 SPACA1Q9HBV2 294 aa12.59□□□□□ -0.39
CLN3-246ENST00000636228 CKLFQ9UBR5 152 aa12.59□□□□□ -0.39
CLN3-246ENST00000636228 DIMT1Q9UNQ2 313 aaKnown RBP12.59□□□□□ -0.39
CLN3-246ENST00000636228 TXNL1O43396 289 aa12.58□□□□□ -0.4
CLN3-246ENST00000636228 CRTAPO75718 401 aaPredicted RBP12.58□□□□□ -0.4
CLN3-246ENST00000636228 BAG2O95816 211 aa12.58□□□□□ -0.4
CLN3-246ENST00000636228 MYL12AP19105 171 aa12.58□□□□□ -0.4
CLN3-246ENST00000636228 PPP1CCP36873 323 aaKnown RBP12.58□□□□□ -0.4
CLN3-246ENST00000636228 FHL3Q13643 280 aa12.58□□□□□ -0.4
CLN3-246ENST00000636228 KIAA0141Q14154 515 aaPredicted RBP12.58□□□□□ -0.4
CLN3-246ENST00000636228 GPR176Q14439 515 aa12.58□□□□□ -0.4
CLN3-246ENST00000636228 Q3ZCU0 254 aa12.58□□□□□ -0.4
CLN3-246ENST00000636228 C6orf183Q5T699 404 aa12.58□□□□□ -0.4
CLN3-246ENST00000636228 AWAT2Q6E213 333 aa12.58□□□□□ -0.4
CLN3-246ENST00000636228 PGLYRP3Q96LB9 341 aa12.58□□□□□ -0.4
CLN3-246ENST00000636228 OR2S2Q9NQN1 319 aa12.58□□□□□ -0.4
CLN3-246ENST00000636228 EXOSC1Q9Y3B2 195 aaKnown RBP12.58□□□□□ -0.4
CLN3-246ENST00000636228 TRBV5-7A0A0A0MS05 114 aa12.57□□□□□ -0.4
CLN3-246ENST00000636228 LANCL1O43813 399 aa12.57□□□□□ -0.4
CLN3-246ENST00000636228 LY86O95711 162 aa12.57□□□□□ -0.4
CLN3-246ENST00000636228 MGMTP16455 207 aa12.57□□□□□ -0.4
CLN3-246ENST00000636228 MORN2Q502X0 79 aa12.57□□□□□ -0.4
CLN3-246ENST00000636228 ASPHD1Q5U4P2 390 aa12.57□□□□□ -0.4
CLN3-246ENST00000636228 SIGIRRQ6IA17 410 aa12.57□□□□□ -0.4
CLN3-246ENST00000636228 GAPTQ8N292 157 aa12.57□□□□□ -0.4
CLN3-246ENST00000636228 ZNF485Q8NCK3 441 aa12.57□□□□□ -0.4
CLN3-246ENST00000636228 OR1N2Q8NGR9 330 aa12.57□□□□□ -0.4
CLN3-246ENST00000636228 TMEM80Q96HE8 168 aa12.57□□□□□ -0.4
CLN3-246ENST00000636228 MRPL20Q9BYC9 149 aaKnown RBP12.57□□□□□ -0.4
CLN3-246ENST00000636228 PARP11Q9NR21 331 aa12.57□□□□□ -0.4
CLN3-246ENST00000636228 SMPD3Q9NY59 655 aaPredicted RBP12.57□□□□□ -0.4
CLN3-246ENST00000636228 ATP6V0E1O15342 81 aa12.56□□□□□ -0.4
CLN3-246ENST00000636228 FSTP19883 344 aa12.56□□□□□ -0.4
CLN3-246ENST00000636228 FUT3P21217 361 aa12.56□□□□□ -0.4
CLN3-246ENST00000636228 PPIFP30405 207 aaKnown RBP12.56□□□□□ -0.4
CLN3-246ENST00000636228 OR3A3P47888 321 aa12.56□□□□□ -0.4
CLN3-246ENST00000636228 ACTBP60709 375 aa12.56□□□□□ -0.4
CLN3-246ENST00000636228 GNB1P62873 340 aa12.56□□□□□ -0.4
CLN3-246ENST00000636228 DOC2BQ14184 412 aa12.56□□□□□ -0.4
CLN3-246ENST00000636228 YIF1BQ5BJH7 314 aa12.56□□□□□ -0.4
CLN3-246ENST00000636228 TMEM65Q6PI78 240 aa12.56□□□□□ -0.4
CLN3-246ENST00000636228 ODF3L1Q8IXM7 274 aa12.56□□□□□ -0.4
CLN3-246ENST00000636228 ZNF491Q8N8L2 437 aa12.56□□□□□ -0.4
CLN3-246ENST00000636228 MYOZ3Q8TDC0 251 aa12.56□□□□□ -0.4
CLN3-246ENST00000636228 GGHQ92820 318 aa12.56□□□□□ -0.4
CLN3-246ENST00000636228 FAM46BQ96A09 425 aa12.56□□□□□ -0.4
CLN3-246ENST00000636228 MRPS24Q96EL2 167 aaKnown RBP12.56□□□□□ -0.4
CLN3-246ENST00000636228 RDH12Q96NR8 316 aa12.56□□□□□ -0.4
CLN3-246ENST00000636228 NABP2Q9BQ15 211 aa12.56□□□□□ -0.4
CLN3-246ENST00000636228 ANKRD60Q9BZ19 345 aa12.56□□□□□ -0.4
CLN3-246ENST00000636228 ALX4Q9H161 411 aaPredicted RBP12.56□□□□□ -0.4
CLN3-246ENST00000636228 RAB9BQ9NP90 201 aa12.56□□□□□ -0.4
CLN3-246ENST00000636228 CHCHD3Q9NX63 227 aaKnown RBP12.56□□□□□ -0.4
CLN3-246ENST00000636228 ZNF256Q9Y2P7 627 aaPredicted RBP12.56□□□□□ -0.4
CLN3-246ENST00000636228 IGHV7-81A0A0B4J1V7 117 aa12.55□□□□□ -0.4
CLN3-246ENST00000636228 ANKRD65E5RJM6 399 aa12.55□□□□□ -0.4
CLN3-246ENST00000636228 I3L521 148 aa12.55□□□□□ -0.4
CLN3-246ENST00000636228 SC5DO75845 299 aa12.55□□□□□ -0.4
CLN3-246ENST00000636228 LRRC36Q1X8D7 754 aa12.55□□□□□ -0.4
CLN3-246ENST00000636228 LYPD6Q86Y78 171 aa12.55□□□□□ -0.4
CLN3-246ENST00000636228 C10orf67Q8IYJ2 551 aa12.55□□□□□ -0.4
CLN3-246ENST00000636228 MRPL30Q8TCC3 161 aaKnown RBP12.55□□□□□ -0.4
CLN3-246ENST00000636228 CASTOR1Q8WTX7 329 aa12.55□□□□□ -0.4
CLN3-246ENST00000636228 CYGBQ8WWM9 190 aa12.55□□□□□ -0.4
CLN3-246ENST00000636228 UBE2E2Q96LR5 201 aa12.55□□□□□ -0.4
CLN3-246ENST00000636228 Q96M66 194 aa12.55□□□□□ -0.4
CLN3-246ENST00000636228 ZNF251Q9BRH9 671 aa12.55□□□□□ -0.4
CLN3-246ENST00000636228 ABHD14AQ9BUJ0 271 aa12.55□□□□□ -0.4
CLN3-246ENST00000636228 OR51J1Q9H342 316 aa12.55□□□□□ -0.4
CLN3-246ENST00000636228 MBNL3Q9NUK0 354 aaKnown RBP12.55□□□□□ -0.4
CLN3-246ENST00000636228 KCNIP1Q9NZI2 227 aa12.55□□□□□ -0.4
CLN3-246ENST00000636228 VSIG4Q9Y279 399 aa12.55□□□□□ -0.4
CLN3-246ENST00000636228 HUWE1Q7Z6Z7 4374 aaKnown RBP12.54□□□□□ -0.4
CLN3-246ENST00000636228 TRAV41A0A0B4J266 112 aa12.54□□□□□ -0.4
CLN3-246ENST00000636228 IRGMA1A4Y4 181 aa12.54□□□□□ -0.4
CLN3-246ENST00000636228 OR5H8P0DN80 308 aa12.54□□□□□ -0.4
CLN3-246ENST00000636228 BLVRBP30043 206 aaPredicted RBP12.54□□□□□ -0.4
CLN3-246ENST00000636228 CAPGP40121 348 aa12.54□□□□□ -0.4
CLN3-246ENST00000636228 RAB9AP51151 201 aa12.54□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms