RNA–Protein interactions for RNA: ENST00000635973.1

CLN3-243, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,084 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-243ENST00000635973 IER3P46695 156 aa14.67□□□□□ -0.06
CLN3-243ENST00000635973 PLA1AQ53H76 456 aa14.67□□□□□ -0.06
CLN3-243ENST00000635973 UBE2NLQ5JXB2 153 aa14.67□□□□□ -0.06
CLN3-243ENST00000635973 MINOS1Q5TGZ0 78 aa14.67□□□□□ -0.06
CLN3-243ENST00000635973 LDLRAD3Q86YD5 345 aa14.67□□□□□ -0.06
CLN3-243ENST00000635973 SAMD12Q8N8I0 201 aa14.67□□□□□ -0.06
CLN3-243ENST00000635973 OR52M1Q8NGK5 317 aa14.67□□□□□ -0.06
CLN3-243ENST00000635973 WFDC12Q8WWY7 111 aa14.67□□□□□ -0.06
CLN3-243ENST00000635973 KCTD12Q96CX2 325 aaKnown RBP14.67□□□□□ -0.06
CLN3-243ENST00000635973 SLC25A38Q96DW6 304 aa14.67□□□□□ -0.06
CLN3-243ENST00000635973 MGAT4AQ9UM21 535 aa14.67□□□□□ -0.06
CLN3-243ENST00000635973 AMMECR1Q9Y4X0 333 aaPredicted RBP14.67□□□□□ -0.06
CLN3-243ENST00000635973 MINOS1-NBL1R4GNA1 71 aa14.67□□□□□ -0.06
CLN3-243ENST00000635973 CCDC160A6NGH7 325 aa14.66□□□□□ -0.06
CLN3-243ENST00000635973 F2RL2O00254 374 aa14.66□□□□□ -0.06
CLN3-243ENST00000635973 TMBIM6P55061 237 aa14.66□□□□□ -0.06
CLN3-243ENST00000635973 HMGN3Q15651 99 aa14.66□□□□□ -0.06
CLN3-243ENST00000635973 SSX2Q16385 188 aa14.66□□□□□ -0.06
CLN3-243ENST00000635973 BEND2Q8NDZ0 799 aa14.66□□□□□ -0.06
CLN3-243ENST00000635973 OR10V1Q8NGI7 309 aa14.66□□□□□ -0.06
CLN3-243ENST00000635973 OR4P4Q8NGL7 312 aa14.66□□□□□ -0.06
CLN3-243ENST00000635973 OR10X1Q8NGY0 326 aa14.66□□□□□ -0.06
CLN3-243ENST00000635973 IL1F10Q8WWZ1 152 aa14.66□□□□□ -0.06
CLN3-243ENST00000635973 AP3S1Q92572 193 aa14.66□□□□□ -0.06
CLN3-243ENST00000635973 CREB3L1Q96BA8 519 aa14.66□□□□□ -0.06
CLN3-243ENST00000635973 GALMQ96C23 342 aa14.66□□□□□ -0.06
CLN3-243ENST00000635973 MALSU1Q96EH3 234 aa14.66□□□□□ -0.06
CLN3-243ENST00000635973 BCL7BQ9BQE9 202 aa14.66□□□□□ -0.06
CLN3-243ENST00000635973 MMP28Q9H239 520 aa14.66□□□□□ -0.06
CLN3-243ENST00000635973 OR2S2Q9NQN1 319 aa14.66□□□□□ -0.06
CLN3-243ENST00000635973 DIABLOQ9NR28 239 aa14.66□□□□□ -0.06
CLN3-243ENST00000635973 GFOD1Q9NXC2 390 aa14.66□□□□□ -0.06
CLN3-243ENST00000635973 PSG11Q9UQ72 335 aa14.66□□□□□ -0.06
CLN3-243ENST00000635973 KCNK7Q9Y2U2 307 aa14.66□□□□□ -0.06
CLN3-243ENST00000635973 RNF114Q9Y508 228 aa14.66□□□□□ -0.06
CLN3-243ENST00000635973 TRBV6-6A0A0A6YYG2 114 aa14.65□□□□□ -0.06
CLN3-243ENST00000635973 J3QR06 171 aa14.65□□□□□ -0.06
CLN3-243ENST00000635973 PAX6P26367 422 aa14.65□□□□□ -0.06
CLN3-243ENST00000635973 CEACAM3P40198 252 aa14.65□□□□□ -0.06
CLN3-243ENST00000635973 GNG2P59768 71 aa14.65□□□□□ -0.06
CLN3-243ENST00000635973 HLA-DRB3P79483 266 aa14.65□□□□□ -0.06
CLN3-243ENST00000635973 RELBQ01201 579 aa14.65□□□□□ -0.06
CLN3-243ENST00000635973 LRRC75BQ2VPJ9 315 aa14.65□□□□□ -0.06
CLN3-243ENST00000635973 HLA-DRB5Q30154 266 aa14.65□□□□□ -0.06
CLN3-243ENST00000635973 CDNFQ49AH0 187 aa14.65□□□□□ -0.06
CLN3-243ENST00000635973 UTF1Q5T230 341 aa14.65□□□□□ -0.06
CLN3-243ENST00000635973 ABCB10Q9NRK6 738 aa14.65□□□□□ -0.06
CLN3-243ENST00000635973 COMMD3Q9UBI1 195 aa14.65□□□□□ -0.06
CLN3-243ENST00000635973 HILPDAQ9Y5L2 63 aa14.65□□□□□ -0.06
CLN3-243ENST00000635973 A0A0A6YYH2 397 aa14.64□□□□□ -0.07
CLN3-243ENST00000635973 A0A1W2PPE3 182 aa14.64□□□□□ -0.07
CLN3-243ENST00000635973 TMEM235A6NFC5 223 aa14.64□□□□□ -0.07
CLN3-243ENST00000635973 A6NJ64 397 aa14.64□□□□□ -0.07
CLN3-243ENST00000635973 LEUTXA8MZ59 168 aa14.64□□□□□ -0.07
CLN3-243ENST00000635973 TIMM23O14925 209 aa14.64□□□□□ -0.07
CLN3-243ENST00000635973 GSTP1P09211 210 aaKnown RBP14.64□□□□□ -0.07
CLN3-243ENST00000635973 SOX6P35712 828 aa14.64□□□□□ -0.07
CLN3-243ENST00000635973 ARHGDIBP52566 201 aa14.64□□□□□ -0.07
CLN3-243ENST00000635973 LOXL3P58215 753 aa14.64□□□□□ -0.07
CLN3-243ENST00000635973 SRSF4Q08170 494 aaKnown RBP14.64□□□□□ -0.07
CLN3-243ENST00000635973 SPCS2Q15005 226 aa14.64□□□□□ -0.07
CLN3-243ENST00000635973 DHRS7BQ6IAN0 325 aaPredicted RBP14.64□□□□□ -0.07
CLN3-243ENST00000635973 ZNF880Q6PDB4 577 aa14.64□□□□□ -0.07
CLN3-243ENST00000635973 ACOT12Q8WYK0 555 aa14.64□□□□□ -0.07
CLN3-243ENST00000635973 S100A16Q96FQ6 103 aaKnown RBP14.64□□□□□ -0.07
CLN3-243ENST00000635973 SSX3Q99909 188 aa14.64□□□□□ -0.07
CLN3-243ENST00000635973 Q9N2K0 584 aa14.64□□□□□ -0.07
CLN3-243ENST00000635973 DPM3Q9P2X0 92 aa14.64□□□□□ -0.07
CLN3-243ENST00000635973 JPT1Q9UK76 154 aa14.64□□□□□ -0.07
CLN3-243ENST00000635973 PKD1L1Q8TDX9 2849 aa14.64□□□□□ -0.07
CLN3-243ENST00000635973 TRAV18A0A075B6X5 111 aa14.63□□□□□ -0.07
CLN3-243ENST00000635973 BUB1B-PAK6H3BSN5 160 aa14.63□□□□□ -0.07
CLN3-243ENST00000635973 M0QZ24 198 aa14.63□□□□□ -0.07
CLN3-243ENST00000635973 IGLV1-47P01700 117 aa14.63□□□□□ -0.07
CLN3-243ENST00000635973 FCGR3AP08637 254 aa14.63□□□□□ -0.07
CLN3-243ENST00000635973 ZNF182P17025 639 aaPredicted RBP14.63□□□□□ -0.07
CLN3-243ENST00000635973 HACD4Q5VWC8 232 aa14.63□□□□□ -0.07
CLN3-243ENST00000635973 MZT2AQ6P582 158 aa14.63□□□□□ -0.07
CLN3-243ENST00000635973 Q6ZPA2 131 aa14.63□□□□□ -0.07
CLN3-243ENST00000635973 C5orf24Q7Z6I8 188 aa14.63□□□□□ -0.07
CLN3-243ENST00000635973 IZUMO1Q8IYV9 350 aa14.63□□□□□ -0.07
CLN3-243ENST00000635973 OR52L2PQ8NGH6 319 aa14.63□□□□□ -0.07
CLN3-243ENST00000635973 OR5R1Q8NH85 324 aa14.63□□□□□ -0.07
CLN3-243ENST00000635973 RPEQ96AT9 228 aa14.63□□□□□ -0.07
CLN3-243ENST00000635973 ISOC1Q96CN7 298 aa14.63□□□□□ -0.07
CLN3-243ENST00000635973 AJUBAQ96IF1 538 aa14.63□□□□□ -0.07
CLN3-243ENST00000635973 MEGF9Q9H1U4 602 aa14.63□□□□□ -0.07
CLN3-243ENST00000635973 ABCG5Q9H222 651 aa14.63□□□□□ -0.07
CLN3-243ENST00000635973 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP14.63□□□□□ -0.07
CLN3-243ENST00000635973 H3BUX3 64 aa14.62□□□□□ -0.07
CLN3-243ENST00000635973 HSPA12AO43301 675 aa14.62□□□□□ -0.07
CLN3-243ENST00000635973 RGS11O94810 467 aa14.62□□□□□ -0.07
CLN3-243ENST00000635973 IL3RAP26951 378 aa14.62□□□□□ -0.07
CLN3-243ENST00000635973 MNDAP41218 407 aa14.62□□□□□ -0.07
CLN3-243ENST00000635973 HTD2P86397 168 aa14.62□□□□□ -0.07
CLN3-243ENST00000635973 PITPNAQ00169 270 aa14.62□□□□□ -0.07
CLN3-243ENST00000635973 MADCAM1Q13477 382 aa14.62□□□□□ -0.07
CLN3-243ENST00000635973 GNMTQ14749 295 aa14.62□□□□□ -0.07
CLN3-243ENST00000635973 ZNF260Q3ZCT1 412 aa14.62□□□□□ -0.07
CLN3-243ENST00000635973 Q3ZCU0 254 aa14.62□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms