RNA–Protein interactions for RNA: ENST00000616974.1

LINC00540-202, long intergenic non-protein coding RNA 540, humanhuman

TSL 1 (best)

Gene LINC00540, Length 2,143 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-202ENST00000616974 IGSF11Q5DX21 431 aa10.85□□□□□ -0.67
LINC00540-202ENST00000616974 FAM216AQ8WUB2 273 aa10.85□□□□□ -0.67
LINC00540-202ENST00000616974 CMSS1Q9BQ75 279 aaKnown RBP10.85□□□□□ -0.67
LINC00540-202ENST00000616974 SIGLEC9Q9Y336 463 aa10.85□□□□□ -0.67
LINC00540-202ENST00000616974 IGHV3-72A0A0B4J1Y9 119 aa10.84□□□□□ -0.67
LINC00540-202ENST00000616974 SH2D7A6NKC9 451 aaPredicted RBP10.84□□□□□ -0.67
LINC00540-202ENST00000616974 GLAP06280 429 aa10.84□□□□□ -0.67
LINC00540-202ENST00000616974 FCGR3AP08637 254 aa10.84□□□□□ -0.67
LINC00540-202ENST00000616974 MDKP21741 143 aaPredicted RBP10.84□□□□□ -0.67
LINC00540-202ENST00000616974 HTR1DP28221 377 aa10.84□□□□□ -0.67
LINC00540-202ENST00000616974 LINC00205P59089 165 aa10.84□□□□□ -0.67
LINC00540-202ENST00000616974 CDNFQ49AH0 187 aa10.84□□□□□ -0.67
LINC00540-202ENST00000616974 OR9G1Q8NH87 305 aa10.84□□□□□ -0.67
LINC00540-202ENST00000616974 TMEM158Q8WZ71 300 aa10.84□□□□□ -0.67
LINC00540-202ENST00000616974 Q9N2K0 584 aa10.84□□□□□ -0.67
LINC00540-202ENST00000616974 OR2S2Q9NQN1 319 aa10.84□□□□□ -0.67
LINC00540-202ENST00000616974 GNG12Q9UBI6 72 aa10.84□□□□□ -0.67
LINC00540-202ENST00000616974 MEIS3P1A6NDR6 274 aa10.84□□□□□ -0.67
LINC00540-202ENST00000616974 CLDN34H7C241 214 aa10.84□□□□□ -0.67
LINC00540-202ENST00000616974 TRIM77I1YAP6 450 aa10.84□□□□□ -0.67
LINC00540-202ENST00000616974 EIF4EP06730 217 aaKnown RBP10.84□□□□□ -0.67
LINC00540-202ENST00000616974 ACTG1P63261 375 aa10.84□□□□□ -0.67
LINC00540-202ENST00000616974 HABP2Q14520 560 aaPredicted RBP10.84□□□□□ -0.67
LINC00540-202ENST00000616974 SAMD12Q8N8I0 201 aa10.84□□□□□ -0.67
LINC00540-202ENST00000616974 CREB3L1Q96BA8 519 aa10.84□□□□□ -0.67
LINC00540-202ENST00000616974 DCSTAMPQ9H295 470 aa10.84□□□□□ -0.67
LINC00540-202ENST00000616974 C12orf4Q9NQ89 552 aa10.84□□□□□ -0.67
LINC00540-202ENST00000616974 C1RLQ9NZP8 487 aa10.84□□□□□ -0.67
LINC00540-202ENST00000616974 DPM3Q9P2X0 92 aa10.84□□□□□ -0.67
LINC00540-202ENST00000616974 COMMD3Q9UBI1 195 aa10.84□□□□□ -0.67
LINC00540-202ENST00000616974 VPREB3Q9UKI3 123 aa10.84□□□□□ -0.67
LINC00540-202ENST00000616974 TBL2Q9Y4P3 447 aaKnown RBP10.84□□□□□ -0.67
LINC00540-202ENST00000616974 A0A1W2PPI3 338 aa10.83□□□□□ -0.68
LINC00540-202ENST00000616974 OR3A3P47888 321 aa10.83□□□□□ -0.68
LINC00540-202ENST00000616974 LRRC75BQ2VPJ9 315 aa10.83□□□□□ -0.68
LINC00540-202ENST00000616974 ZNF260Q3ZCT1 412 aa10.83□□□□□ -0.68
LINC00540-202ENST00000616974 MORN2Q502X0 79 aa10.83□□□□□ -0.68
LINC00540-202ENST00000616974 TPTE2P1Q5T6R2 138 aa10.83□□□□□ -0.68
LINC00540-202ENST00000616974 OR52W1Q6IF63 320 aa10.83□□□□□ -0.68
LINC00540-202ENST00000616974 ODF3L1Q8IXM7 274 aa10.83□□□□□ -0.68
LINC00540-202ENST00000616974 GVQW1Q8N7I0 195 aa10.83□□□□□ -0.68
LINC00540-202ENST00000616974 PTX4Q96A99 478 aa10.83□□□□□ -0.68
LINC00540-202ENST00000616974 MALSU1Q96EH3 234 aa10.83□□□□□ -0.68
LINC00540-202ENST00000616974 SLC23A1Q9UHI7 598 aa10.83□□□□□ -0.68
LINC00540-202ENST00000616974 TRAV18A0A075B6X5 111 aa10.82□□□□□ -0.68
LINC00540-202ENST00000616974 TOR1AO14656 332 aa10.82□□□□□ -0.68
LINC00540-202ENST00000616974 ST8SIA5O15466 376 aa10.82□□□□□ -0.68
LINC00540-202ENST00000616974 SPINT2O43291 252 aa10.82□□□□□ -0.68
LINC00540-202ENST00000616974 CA11O75493 328 aa10.82□□□□□ -0.68
LINC00540-202ENST00000616974 GSTT2P0CG29 244 aa10.82□□□□□ -0.68
LINC00540-202ENST00000616974 GSTT2BP0CG30 244 aa10.82□□□□□ -0.68
LINC00540-202ENST00000616974 C6orf183Q5T699 404 aa10.82□□□□□ -0.68
LINC00540-202ENST00000616974 OR56B4Q8NH76 319 aa10.82□□□□□ -0.68
LINC00540-202ENST00000616974 SPATA2Q9UM82 520 aa10.82□□□□□ -0.68
LINC00540-202ENST00000616974 TIMM23O14925 209 aa10.82□□□□□ -0.68
LINC00540-202ENST00000616974 HLA-DRB3P79483 266 aa10.82□□□□□ -0.68
LINC00540-202ENST00000616974 SLC25A48Q6ZT89 311 aaKnown RBP10.82□□□□□ -0.68
LINC00540-202ENST00000616974 ST6GALNAC6Q969X2 333 aa10.82□□□□□ -0.68
LINC00540-202ENST00000616974 ABHD14BQ96IU4 210 aa10.82□□□□□ -0.68
LINC00540-202ENST00000616974 JMJD8Q96S16 334 aa10.82□□□□□ -0.68
LINC00540-202ENST00000616974 TRBV6-6A0A0A6YYG2 114 aa10.81□□□□□ -0.68
LINC00540-202ENST00000616974 METTL21EPA6NDL7 271 aa10.81□□□□□ -0.68
LINC00540-202ENST00000616974 VGLL3A8MV65 326 aa10.81□□□□□ -0.68
LINC00540-202ENST00000616974 HPGDSO60760 199 aa10.81□□□□□ -0.68
LINC00540-202ENST00000616974 RPL5P46777 297 aaKnown RBP10.81□□□□□ -0.68
LINC00540-202ENST00000616974 TMEM95Q3KNT9 176 aa10.81□□□□□ -0.68
LINC00540-202ENST00000616974 Q6ZSV7 163 aa10.81□□□□□ -0.68
LINC00540-202ENST00000616974 DRAM1Q8N682 238 aa10.81□□□□□ -0.68
LINC00540-202ENST00000616974 OR10X1Q8NGY0 326 aa10.81□□□□□ -0.68
LINC00540-202ENST00000616974 ZNF596Q8TC21 504 aa10.81□□□□□ -0.68
LINC00540-202ENST00000616974 CFHR4Q92496 578 aa10.81□□□□□ -0.68
LINC00540-202ENST00000616974 POMT1Q9Y6A1 747 aa10.81□□□□□ -0.68
LINC00540-202ENST00000616974 CEPT1Q9Y6K0 416 aa10.81□□□□□ -0.68
LINC00540-202ENST00000616974 H3BMQ9 156 aa10.81□□□□□ -0.68
LINC00540-202ENST00000616974 J3QRK9 145 aa10.81□□□□□ -0.68
LINC00540-202ENST00000616974 PROP1O75360 226 aa10.81□□□□□ -0.68
LINC00540-202ENST00000616974 KRTAP10-3P60369 221 aa10.81□□□□□ -0.68
LINC00540-202ENST00000616974 BLCAPP62952 87 aa10.81□□□□□ -0.68
LINC00540-202ENST00000616974 ARFRP1Q13795 201 aa10.81□□□□□ -0.68
LINC00540-202ENST00000616974 HNF4GQ14541 408 aa10.81□□□□□ -0.68
LINC00540-202ENST00000616974 RPL39P5Q59GN2 51 aa10.81□□□□□ -0.68
LINC00540-202ENST00000616974 MINOS1Q5TGZ0 78 aa10.81□□□□□ -0.68
LINC00540-202ENST00000616974 GALMQ96C23 342 aa10.81□□□□□ -0.68
LINC00540-202ENST00000616974 ISOC1Q96CN7 298 aa10.81□□□□□ -0.68
LINC00540-202ENST00000616974 C5orf30Q96GV9 206 aa10.81□□□□□ -0.68
LINC00540-202ENST00000616974 IFI27L2Q9H2X8 130 aa10.81□□□□□ -0.68
LINC00540-202ENST00000616974 KCNIP1Q9NZI2 227 aa10.81□□□□□ -0.68
LINC00540-202ENST00000616974 RNF150Q9ULK6 438 aa10.81□□□□□ -0.68
LINC00540-202ENST00000616974 TCF19Q9Y242 345 aa10.81□□□□□ -0.68
LINC00540-202ENST00000616974 MINOS1-NBL1R4GNA1 71 aa10.81□□□□□ -0.68
LINC00540-202ENST00000616974 LEUTXA8MZ59 168 aa10.8□□□□□ -0.68
LINC00540-202ENST00000616974 HSD17B6O14756 317 aa10.8□□□□□ -0.68
LINC00540-202ENST00000616974 BET1O15155 118 aa10.8□□□□□ -0.68
LINC00540-202ENST00000616974 HKR1P10072 659 aa10.8□□□□□ -0.68
LINC00540-202ENST00000616974 ELK1P19419 428 aa10.8□□□□□ -0.68
LINC00540-202ENST00000616974 PRRX1P54821 245 aa10.8□□□□□ -0.68
LINC00540-202ENST00000616974 AWAT1Q58HT5 328 aa10.8□□□□□ -0.68
LINC00540-202ENST00000616974 HACD4Q5VWC8 232 aa10.8□□□□□ -0.68
LINC00540-202ENST00000616974 LYG1Q8N1E2 194 aa10.8□□□□□ -0.68
LINC00540-202ENST00000616974 OR52M1Q8NGK5 317 aa10.8□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 77.6 ms