RNA–Protein interactions for RNA: ENST00000616154.1

CDX1-202, Transcript of caudal type homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CDX1, Length 1,343 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-202ENST00000616154 JAGN1Q8N5M9 183 aa15.08■□□□□ 0
CDX1-202ENST00000616154 SPACA1Q9HBV2 294 aa15.08■□□□□ 0
CDX1-202ENST00000616154 MRPS28Q9Y2Q9 187 aaKnown RBP15.08■□□□□ 0
CDX1-202ENST00000616154 FAM90A10PA6NDY2 464 aa15.07■□□□□ 0
CDX1-202ENST00000616154 FAM90A18PA6NE21 464 aa15.07■□□□□ 0
CDX1-202ENST00000616154 FAM90A16PA6NEW6 464 aa15.07■□□□□ 0
CDX1-202ENST00000616154 FAM90A20PA6NIJ5 464 aa15.07■□□□□ 0
CDX1-202ENST00000616154 FAM90A7PA6NKC0 464 aa15.07■□□□□ 0
CDX1-202ENST00000616154 FAM90A12PA8MX19 464 aa15.07■□□□□ 0
CDX1-202ENST00000616154 FAM90A5PA8MXJ8 464 aa15.07■□□□□ 0
CDX1-202ENST00000616154 FAM90A23PA8MXZ1 464 aa15.07■□□□□ 0
CDX1-202ENST00000616154 BUB1B-PAK6H3BSN5 160 aa15.07■□□□□ 0
CDX1-202ENST00000616154 TOR1AO14656 332 aa15.07■□□□□ 0
CDX1-202ENST00000616154 FAM90A15PP0C7V4 464 aa15.07■□□□□ 0
CDX1-202ENST00000616154 FAM90A13PP0C7W8 464 aa15.07■□□□□ 0
CDX1-202ENST00000616154 FAM90A14PP0C7W9 464 aa15.07■□□□□ 0
CDX1-202ENST00000616154 FAM90A24PP0C7X0 464 aa15.07■□□□□ 0
CDX1-202ENST00000616154 UTF1Q5T230 341 aa15.07■□□□□ 0
CDX1-202ENST00000616154 GLIPR1L1Q6UWM5 242 aa15.07■□□□□ 0
CDX1-202ENST00000616154 GAPTQ8N292 157 aa15.07■□□□□ 0
CDX1-202ENST00000616154 OR9G1Q8NH87 305 aa15.07■□□□□ 0
CDX1-202ENST00000616154 RCC1LQ96I51 464 aaKnown RBP15.07■□□□□ 0
CDX1-202ENST00000616154 ING3Q9NXR8 418 aa15.07■□□□□ 0
CDX1-202ENST00000616154 IDI2-AS1Q9NZ38 188 aa15.07■□□□□ 0
CDX1-202ENST00000616154 GHRLQ9UBU3 117 aa15.07■□□□□ 0
CDX1-202ENST00000616154 COL7A1Q02388 2944 aa15.07■□□□□ 0
CDX1-202ENST00000616154 TMEM30CPA0ZSE6 113 aa15.06■□□□□ 0
CDX1-202ENST00000616154 SMIM30A4D0T7 59 aa15.06■□□□□ 0
CDX1-202ENST00000616154 K7EIL1 84 aa15.06■□□□□ 0
CDX1-202ENST00000616154 M0QZK8 103 aa15.06■□□□□ 0
CDX1-202ENST00000616154 ZNF182P17025 639 aaPredicted RBP15.06■□□□□ 0
CDX1-202ENST00000616154 HTR2CP28335 458 aa15.06■□□□□ 0
CDX1-202ENST00000616154 RORCP51449 518 aa15.06■□□□□ 0
CDX1-202ENST00000616154 PRRX1P54821 245 aa15.06■□□□□ 0
CDX1-202ENST00000616154 SCAND1P57086 179 aa15.06■□□□□ 0
CDX1-202ENST00000616154 CCDC144NLQ6NUI1 221 aa15.06■□□□□ 0
CDX1-202ENST00000616154 KCTD12Q96CX2 325 aaKnown RBP15.06■□□□□ 0
CDX1-202ENST00000616154 SLIRPQ9GZT3 109 aaKnown RBP15.06■□□□□ 0
CDX1-202ENST00000616154 STEAP1Q9UHE8 339 aa15.06■□□□□ 0
CDX1-202ENST00000616154 SH2D7A6NKC9 451 aaPredicted RBP15.05■□□□□ -0
CDX1-202ENST00000616154 LDLRAD4O15165 306 aa15.05■□□□□ -0
CDX1-202ENST00000616154 DUS4LO95620 317 aaKnown RBP15.05■□□□□ -0
CDX1-202ENST00000616154 GLAP06280 429 aa15.05■□□□□ -0
CDX1-202ENST00000616154 UBBP0CG47 229 aa15.05■□□□□ -0
CDX1-202ENST00000616154 GZMHP20718 246 aa15.05■□□□□ -0
CDX1-202ENST00000616154 MNDAP41218 407 aa15.05■□□□□ -0
CDX1-202ENST00000616154 RANBP1P43487 201 aa15.05■□□□□ -0
CDX1-202ENST00000616154 QRFPP83859 136 aa15.05■□□□□ -0
CDX1-202ENST00000616154 RAB11BQ15907 218 aa15.05■□□□□ -0
CDX1-202ENST00000616154 AWAT2Q6E213 333 aa15.05■□□□□ -0
CDX1-202ENST00000616154 C10orf99Q6UWK7 81 aa15.05■□□□□ -0
CDX1-202ENST00000616154 ZNF497Q6ZNH5 498 aa15.05■□□□□ -0
CDX1-202ENST00000616154 OR52M1Q8NGK5 317 aa15.05■□□□□ -0
CDX1-202ENST00000616154 MRGPRDQ8TDS7 321 aa15.05■□□□□ -0
CDX1-202ENST00000616154 Q96M66 194 aa15.05■□□□□ -0
CDX1-202ENST00000616154 NXF2Q9GZY0 626 aaKnown RBP15.05■□□□□ -0
CDX1-202ENST00000616154 PLGRKTQ9HBL7 147 aa15.05■□□□□ -0
CDX1-202ENST00000616154 C15orf65H3BRN8 121 aa15.04■□□□□ -0
CDX1-202ENST00000616154 J3QR06 171 aa15.04■□□□□ -0
CDX1-202ENST00000616154 ORC5O43913 435 aa15.04■□□□□ -0
CDX1-202ENST00000616154 BPNT1O95861 308 aa15.04■□□□□ -0
CDX1-202ENST00000616154 SLC2A2P11168 524 aaPredicted RBP15.04■□□□□ -0
CDX1-202ENST00000616154 SSTR5P35346 364 aa15.04■□□□□ -0
CDX1-202ENST00000616154 KHDC1LQ5JSQ8 128 aa15.04■□□□□ -0
CDX1-202ENST00000616154 HES5Q5TA89 166 aa15.04■□□□□ -0
CDX1-202ENST00000616154 TMEM104Q8NE00 496 aa15.04■□□□□ -0
CDX1-202ENST00000616154 DAPK2Q9UIK4 370 aa15.04■□□□□ -0
CDX1-202ENST00000616154 MOB4Q9Y3A3 225 aa15.04■□□□□ -0
CDX1-202ENST00000616154 A3GALT2U3KPV4 340 aa15.04■□□□□ -0
CDX1-202ENST00000616154 NBEAL2Q6ZNJ1 2754 aa15.03■□□□□ -0
CDX1-202ENST00000616154 CA11O75493 328 aa15.03■□□□□ -0
CDX1-202ENST00000616154 MT-ND4P03905 459 aa15.03■□□□□ -0
CDX1-202ENST00000616154 FAM106CPP0CH98 169 aa15.03■□□□□ -0
CDX1-202ENST00000616154 MGMTP16455 207 aa15.03■□□□□ -0
CDX1-202ENST00000616154 RBM39Q14498 530 aaKnown RBP15.03■□□□□ -0
CDX1-202ENST00000616154 CNPY1Q3B7I2 92 aa15.03■□□□□ -0
CDX1-202ENST00000616154 Q3ZCU0 254 aa15.03■□□□□ -0
CDX1-202ENST00000616154 C9orf152Q5JTZ5 239 aa15.03■□□□□ -0
CDX1-202ENST00000616154 THNSL2Q86YJ6 484 aa15.03■□□□□ -0
CDX1-202ENST00000616154 C8orf31Q8N9H6 132 aa15.03■□□□□ -0
CDX1-202ENST00000616154 ACOT12Q8WYK0 555 aa15.03■□□□□ -0
CDX1-202ENST00000616154 FAM3DQ96BQ1 224 aa15.03■□□□□ -0
CDX1-202ENST00000616154 ABRACLQ9P1F3 81 aa15.03■□□□□ -0
CDX1-202ENST00000616154 PSG11Q9UQ72 335 aa15.03■□□□□ -0
CDX1-202ENST00000616154 AMMECR1Q9Y4X0 333 aaPredicted RBP15.03■□□□□ -0
CDX1-202ENST00000616154 DNAH9Q9NYC9 4486 aa15.03■□□□□ -0
CDX1-202ENST00000616154 A0A075B6Q4 140 aa15.02■□□□□ -0
CDX1-202ENST00000616154 FAM90A9PA6NNJ1 464 aa15.02■□□□□ -0
CDX1-202ENST00000616154 TMEM14DPA8MWL7 114 aa15.02■□□□□ -0
CDX1-202ENST00000616154 NFYBP25208 207 aa15.02■□□□□ -0
CDX1-202ENST00000616154 SOX6P35712 828 aa15.02■□□□□ -0
CDX1-202ENST00000616154 CLDN12P56749 244 aa15.02■□□□□ -0
CDX1-202ENST00000616154 KRTAP10-11P60412 298 aa15.02■□□□□ -0
CDX1-202ENST00000616154 ATAD3CQ5T2N8 411 aa15.02■□□□□ -0
CDX1-202ENST00000616154 SIGIRRQ6IA17 410 aa15.02■□□□□ -0
CDX1-202ENST00000616154 OR2W3Q7Z3T1 314 aa15.02■□□□□ -0
CDX1-202ENST00000616154 LINC00482Q8N8I6 264 aa15.02■□□□□ -0
CDX1-202ENST00000616154 PTX4Q96A99 478 aa15.02■□□□□ -0
CDX1-202ENST00000616154 DCUN1D5Q9BTE7 237 aa15.02■□□□□ -0
CDX1-202ENST00000616154 KMT2CQ8NEZ4 4911 aaKnown RBP15.02□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms