RNA–Protein interactions for RNA: ENST00000600012.5

UPF1-208, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 5

Gene UPF1, Length 501 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-208ENST00000600012 PAX8Q06710 450 aa10.41□□□□□ -0.74
UPF1-208ENST00000600012 OXA1LQ15070 435 aa10.41□□□□□ -0.74
UPF1-208ENST00000600012 TRIM16LQ309B1 348 aa10.41□□□□□ -0.74
UPF1-208ENST00000600012 ZNF880Q6PDB4 577 aa10.41□□□□□ -0.74
UPF1-208ENST00000600012 TREML4Q6UXN2 200 aa10.41□□□□□ -0.74
UPF1-208ENST00000600012 SLC36A1Q7Z2H8 476 aa10.41□□□□□ -0.74
UPF1-208ENST00000600012 UBALD1Q8TB05 177 aa10.41□□□□□ -0.74
UPF1-208ENST00000600012 DCTN5Q9BTE1 182 aa10.41□□□□□ -0.74
UPF1-208ENST00000600012 DNTTIP1Q9H147 329 aa10.41□□□□□ -0.74
UPF1-208ENST00000600012 ANXA10Q9UJ72 324 aa10.41□□□□□ -0.74
UPF1-208ENST00000600012 TRAPPC2LQ9UL33 140 aa10.41□□□□□ -0.74
UPF1-208ENST00000600012 FAM240BA0A1B0GVZ2 78 aa10.4□□□□□ -0.74
UPF1-208ENST00000600012 NAP1L6A6NFF2 107 aa10.4□□□□□ -0.74
UPF1-208ENST00000600012 CEACAM18A8MTB9 384 aa10.4□□□□□ -0.74
UPF1-208ENST00000600012 SDCBPO00560 298 aaPredicted RBP10.4□□□□□ -0.74
UPF1-208ENST00000600012 SCTP09683 121 aa10.4□□□□□ -0.74
UPF1-208ENST00000600012 ZNF735P0CB33 412 aa10.4□□□□□ -0.74
UPF1-208ENST00000600012 NDUFB7P17568 137 aa10.4□□□□□ -0.74
UPF1-208ENST00000600012 TBPP20226 339 aa10.4□□□□□ -0.74
UPF1-208ENST00000600012 GLP1RP43220 463 aa10.4□□□□□ -0.74
UPF1-208ENST00000600012 OR3A3P47888 321 aa10.4□□□□□ -0.74
UPF1-208ENST00000600012 P2RX3P56373 397 aa10.4□□□□□ -0.74
UPF1-208ENST00000600012 TAS2R46P59540 309 aa10.4□□□□□ -0.74
UPF1-208ENST00000600012 MEF2DQ14814 521 aa10.4□□□□□ -0.74
UPF1-208ENST00000600012 SLC9A3R2Q15599 337 aa10.4□□□□□ -0.74
UPF1-208ENST00000600012 KCNJ8Q15842 424 aa10.4□□□□□ -0.74
UPF1-208ENST00000600012 ACTBL2Q562R1 376 aa10.4□□□□□ -0.74
UPF1-208ENST00000600012 BTNL3Q6UXE8 466 aa10.4□□□□□ -0.74
UPF1-208ENST00000600012 ZNF782Q6ZMW2 699 aaPredicted RBP10.4□□□□□ -0.74
UPF1-208ENST00000600012 C9orf139Q6ZV77 190 aa10.4□□□□□ -0.74
UPF1-208ENST00000600012 MOB1BQ7L9L4 216 aa10.4□□□□□ -0.74
UPF1-208ENST00000600012 OR5AP2Q8NGF4 316 aa10.4□□□□□ -0.74
UPF1-208ENST00000600012 OR51S1Q8NGJ8 323 aa10.4□□□□□ -0.74
UPF1-208ENST00000600012 OR13A1Q8NGR1 328 aa10.4□□□□□ -0.74
UPF1-208ENST00000600012 MED30Q96HR3 178 aa10.4□□□□□ -0.74
UPF1-208ENST00000600012 SSBP3Q9BWW4 388 aaPredicted RBP10.4□□□□□ -0.74
UPF1-208ENST00000600012 FAM234AQ9H0X4 552 aa10.4□□□□□ -0.74
UPF1-208ENST00000600012 MMP28Q9H239 520 aa10.4□□□□□ -0.74
UPF1-208ENST00000600012 EHFQ9NZC4 300 aa10.4□□□□□ -0.74
UPF1-208ENST00000600012 SLC25A10Q9UBX3 287 aaPredicted RBP10.4□□□□□ -0.74
UPF1-208ENST00000600012 TRRAPQ9Y4A5 3859 aa10.4□□□□□ -0.74
UPF1-208ENST00000600012 ODAMA1E959 279 aa10.39□□□□□ -0.75
UPF1-208ENST00000600012 TRDCB7Z8K6 153 aa10.39□□□□□ -0.75
UPF1-208ENST00000600012 DISC1C4P0D8 188 aa10.39□□□□□ -0.75
UPF1-208ENST00000600012 FABP7O15540 132 aa10.39□□□□□ -0.75
UPF1-208ENST00000600012 WNT2P09544 360 aa10.39□□□□□ -0.75
UPF1-208ENST00000600012 IGHV4-38-2P0DP08 117 aa10.39□□□□□ -0.75
UPF1-208ENST00000600012 RPS2P15880 293 aaKnown RBP10.39□□□□□ -0.75
UPF1-208ENST00000600012 SLC6A1P30531 599 aa10.39□□□□□ -0.75
UPF1-208ENST00000600012 PAX5Q02548 391 aa10.39□□□□□ -0.75
UPF1-208ENST00000600012 PAX2Q02962 417 aa10.39□□□□□ -0.75
UPF1-208ENST00000600012 CDK10Q15131 360 aa10.39□□□□□ -0.75
UPF1-208ENST00000600012 SRSF7Q16629 238 aaKnown RBP eCLIP10.39□□□□□ -0.75
UPF1-208ENST00000600012 SCGB2B2Q4G0G5 96 aa10.39□□□□□ -0.75
UPF1-208ENST00000600012 PDLIM3Q53GG5 364 aaPredicted RBP10.39□□□□□ -0.75
UPF1-208ENST00000600012 PLA1AQ53H76 456 aa10.39□□□□□ -0.75
UPF1-208ENST00000600012 IGSF11Q5DX21 431 aa10.39□□□□□ -0.75
UPF1-208ENST00000600012 VAX1Q5SQQ9 334 aa10.39□□□□□ -0.75
UPF1-208ENST00000600012 Q6ZS49 121 aa10.39□□□□□ -0.75
UPF1-208ENST00000600012 OR5D13Q8NGL4 314 aa10.39□□□□□ -0.75
UPF1-208ENST00000600012 MRGPRDQ8TDS7 321 aa10.39□□□□□ -0.75
UPF1-208ENST00000600012 DEDD2Q8WXF8 326 aa10.39□□□□□ -0.75
UPF1-208ENST00000600012 UPRTQ96BW1 309 aa10.39□□□□□ -0.75
UPF1-208ENST00000600012 DPAGT1Q9H3H5 408 aa10.39□□□□□ -0.75
UPF1-208ENST00000600012 MBNL3Q9NUK0 354 aaKnown RBP10.39□□□□□ -0.75
UPF1-208ENST00000600012 KAAG1Q9UBP8 84 aa10.39□□□□□ -0.75
UPF1-208ENST00000600012 TRAV40A0A0B4J280 105 aa10.38□□□□□ -0.75
UPF1-208ENST00000600012 IGHV2-70DA0A0C4DH43 119 aa10.38□□□□□ -0.75
UPF1-208ENST00000600012 IGKV1-6A0A0C4DH72 117 aa10.38□□□□□ -0.75
UPF1-208ENST00000600012 KIR2DS1A0A191URI9 304 aa10.38□□□□□ -0.75
UPF1-208ENST00000600012 DVL1O14640 695 aa10.38□□□□□ -0.75
UPF1-208ENST00000600012 NDUFB3O43676 98 aa10.38□□□□□ -0.75
UPF1-208ENST00000600012 NDUFA2O43678 99 aa10.38□□□□□ -0.75
UPF1-208ENST00000600012 FSTL3O95633 263 aa10.38□□□□□ -0.75
UPF1-208ENST00000600012 IFNA6P05013 189 aa10.38□□□□□ -0.75
UPF1-208ENST00000600012 KIR2DS4P43632 304 aa10.38□□□□□ -0.75
UPF1-208ENST00000600012 GNB2P62879 340 aa10.38□□□□□ -0.75
UPF1-208ENST00000600012 KIR2DS1Q14954 304 aa10.38□□□□□ -0.75
UPF1-208ENST00000600012 HERPUD1Q15011 391 aa10.38□□□□□ -0.75
UPF1-208ENST00000600012 HMGN3Q15651 99 aa10.38□□□□□ -0.75
UPF1-208ENST00000600012 LRRC10Q5BKY1 277 aa10.38□□□□□ -0.75
UPF1-208ENST00000600012 CCBE1Q6UXH8 406 aaPredicted RBP10.38□□□□□ -0.75
UPF1-208ENST00000600012 PRR18Q8N4B5 295 aa10.38□□□□□ -0.75
UPF1-208ENST00000600012 MINDY2Q8NBR6 621 aa10.38□□□□□ -0.75
UPF1-208ENST00000600012 H1FXQ92522 213 aaKnown RBP10.38□□□□□ -0.75
UPF1-208ENST00000600012 NEIL1Q96FI4 390 aaPredicted RBP10.38□□□□□ -0.75
UPF1-208ENST00000600012 KIRREL1Q96J84 757 aa10.38□□□□□ -0.75
UPF1-208ENST00000600012 TAF9BQ9HBM6 251 aa10.38□□□□□ -0.75
UPF1-208ENST00000600012 NECAP2Q9NVZ3 263 aa10.38□□□□□ -0.75
UPF1-208ENST00000600012 MIOXQ9UGB7 285 aa10.38□□□□□ -0.75
UPF1-208ENST00000600012 WNK1Q9H4A3 2382 aa10.37□□□□□ -0.75
UPF1-208ENST00000600012 IGHV3OR16-10A0A075B7F0 116 aa10.37□□□□□ -0.75
UPF1-208ENST00000600012 A0A1B0GVG6 124 aa10.37□□□□□ -0.75
UPF1-208ENST00000600012 FUOMA2VDF0 154 aa10.37□□□□□ -0.75
UPF1-208ENST00000600012 C12orf77C9JDV5 145 aa10.37□□□□□ -0.75
UPF1-208ENST00000600012 BET1O15155 118 aa10.37□□□□□ -0.75
UPF1-208ENST00000600012 ERP29P30040 261 aaKnown RBP10.37□□□□□ -0.75
UPF1-208ENST00000600012 SSTR5P35346 364 aa10.37□□□□□ -0.75
UPF1-208ENST00000600012 DEFA6Q01524 100 aa10.37□□□□□ -0.75
UPF1-208ENST00000600012 C6orf183Q5T699 404 aa10.37□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms