RNA–Protein interactions for RNA: ENST00000596842.5

UPF1-204, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,825 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-204ENST00000596842 RPH3ALQ9UNE2 315 aa13.07□□□□□ -0.32
UPF1-204ENST00000596842 C20orf202A1L168 122 aa13.07□□□□□ -0.32
UPF1-204ENST00000596842 SOD3P08294 240 aa13.07□□□□□ -0.32
UPF1-204ENST00000596842 PCBD1P61457 104 aa13.07□□□□□ -0.32
UPF1-204ENST00000596842 HERPUD1Q15011 391 aa13.07□□□□□ -0.32
UPF1-204ENST00000596842 C11orf42Q8N5U0 333 aa13.07□□□□□ -0.32
UPF1-204ENST00000596842 TAAR9Q96RI9 348 aa13.07□□□□□ -0.32
UPF1-204ENST00000596842 HES7Q9BYE0 225 aa13.07□□□□□ -0.32
UPF1-204ENST00000596842 LY6G6EA0A0G2JKS1 128 aa13.07□□□□□ -0.32
UPF1-204ENST00000596842 RPL36A-HNRNPH2H7BZ11 118 aa13.07□□□□□ -0.32
UPF1-204ENST00000596842 SIRPB1O00241 398 aa13.07□□□□□ -0.32
UPF1-204ENST00000596842 DKK1O94907 266 aa13.07□□□□□ -0.32
UPF1-204ENST00000596842 IGHV2-5P01817 119 aa13.07□□□□□ -0.32
UPF1-204ENST00000596842 CELA3AP09093 270 aa13.07□□□□□ -0.32
UPF1-204ENST00000596842 VDAC1P21796 283 aa13.07□□□□□ -0.32
UPF1-204ENST00000596842 S100GP29377 79 aa13.07□□□□□ -0.32
UPF1-204ENST00000596842 SAP25Q8TEE9 199 aa13.07□□□□□ -0.32
UPF1-204ENST00000596842 IL22RA2Q969J5 263 aa13.07□□□□□ -0.32
UPF1-204ENST00000596842 MUCL1Q96DR8 90 aa13.07□□□□□ -0.32
UPF1-204ENST00000596842 SEBOXQ9HB31 216 aaPredicted RBP13.07□□□□□ -0.32
UPF1-204ENST00000596842 MTCH1Q9NZJ7 389 aa13.07□□□□□ -0.32
UPF1-204ENST00000596842 U3KQA8 63 aa13.07□□□□□ -0.32
UPF1-204ENST00000596842 PITX3O75364 302 aa13.06□□□□□ -0.32
UPF1-204ENST00000596842 CD200P41217 278 aa13.06□□□□□ -0.32
UPF1-204ENST00000596842 ZXDAP98168 799 aa13.06□□□□□ -0.32
UPF1-204ENST00000596842 ICAM4Q14773 271 aa13.06□□□□□ -0.32
UPF1-204ENST00000596842 ZNF787Q6DD87 383 aa13.06□□□□□ -0.32
UPF1-204ENST00000596842 C20orf204Q6ZNR8 217 aa13.06□□□□□ -0.32
UPF1-204ENST00000596842 TUSC5Q8IXB3 177 aa13.06□□□□□ -0.32
UPF1-204ENST00000596842 OR10J5Q8NHC4 309 aa13.06□□□□□ -0.32
UPF1-204ENST00000596842 CEP192Q8TEP8 1941 aa13.06□□□□□ -0.32
UPF1-204ENST00000596842 B4E171 279 aa13.06□□□□□ -0.32
UPF1-204ENST00000596842 TRGC1P0CF51 173 aa13.06□□□□□ -0.32
UPF1-204ENST00000596842 SELEP16581 610 aa13.06□□□□□ -0.32
UPF1-204ENST00000596842 SRPXP78539 464 aa13.06□□□□□ -0.32
UPF1-204ENST00000596842 ADIRFQ15847 76 aa13.06□□□□□ -0.32
UPF1-204ENST00000596842 ZNF66Q6ZN08 573 aa13.06□□□□□ -0.32
UPF1-204ENST00000596842 CABLES2Q9BTV7 478 aa13.06□□□□□ -0.32
UPF1-204ENST00000596842 OR1A1Q9P1Q5 309 aa13.06□□□□□ -0.32
UPF1-204ENST00000596842 MARCH11A6NNE9 402 aa13.06□□□□□ -0.32
UPF1-204ENST00000596842 ZNF716A6NP11 495 aa13.06□□□□□ -0.32
UPF1-204ENST00000596842 CD300LBA8K4G0 201 aa13.06□□□□□ -0.32
UPF1-204ENST00000596842 RPLP1P05386 114 aaKnown RBP13.06□□□□□ -0.32
UPF1-204ENST00000596842 LINC00696Q6ZRV3 163 aa13.06□□□□□ -0.32
UPF1-204ENST00000596842 LRTM2Q8N967 370 aa13.06□□□□□ -0.32
UPF1-204ENST00000596842 DEPPQ9NTK1 212 aa13.06□□□□□ -0.32
UPF1-204ENST00000596842 KIAA1456Q9P272 454 aa13.06□□□□□ -0.32
UPF1-204ENST00000596842 PAM16Q9Y3D7 125 aa13.06□□□□□ -0.32
UPF1-204ENST00000596842 SIT1Q9Y3P8 196 aa13.06□□□□□ -0.32
UPF1-204ENST00000596842 PINLYPA6NC86 204 aa13.05□□□□□ -0.32
UPF1-204ENST00000596842 LILRA1O75019 489 aa13.05□□□□□ -0.32
UPF1-204ENST00000596842 ELOBQ15370 118 aa13.05□□□□□ -0.32
UPF1-204ENST00000596842 WDR25Q64LD2 544 aaPredicted RBP13.05□□□□□ -0.32
UPF1-204ENST00000596842 ZDHHC23Q8IYP9 409 aa13.05□□□□□ -0.32
UPF1-204ENST00000596842 RPUSD4Q96CM3 377 aaKnown RBP13.05□□□□□ -0.32
UPF1-204ENST00000596842 FAM210BQ96KR6 192 aa13.05□□□□□ -0.32
UPF1-204ENST00000596842 RPRMQ9NS64 109 aa13.05□□□□□ -0.32
UPF1-204ENST00000596842 HIKESHIQ53FT3 197 aa13.05□□□□□ -0.32
UPF1-204ENST00000596842 SPINK9Q5DT21 86 aa13.05□□□□□ -0.32
UPF1-204ENST00000596842 OR2Y1Q8NGV0 311 aa13.05□□□□□ -0.32
UPF1-204ENST00000596842 MAFAQ8NHW3 353 aaPredicted RBP13.05□□□□□ -0.32
UPF1-204ENST00000596842 GNPNAT1Q96EK6 184 aaPredicted RBP13.05□□□□□ -0.32
UPF1-204ENST00000596842 GPR87Q9BY21 358 aa13.05□□□□□ -0.32
UPF1-204ENST00000596842 TUBA4BQ9H853 241 aa13.05□□□□□ -0.32
UPF1-204ENST00000596842 Q9N2K0 584 aa13.05□□□□□ -0.32
UPF1-204ENST00000596842 COL5A1P20908 1838 aaPredicted RBP13.05□□□□□ -0.32
UPF1-204ENST00000596842 HEATR1Q9H583 2144 aaKnown RBP13.05□□□□□ -0.32
UPF1-204ENST00000596842 PGLYRP1O75594 196 aaPredicted RBP13.05□□□□□ -0.32
UPF1-204ENST00000596842 CA6P23280 308 aa13.05□□□□□ -0.32
UPF1-204ENST00000596842 GGNQ86UU5 652 aa13.05□□□□□ -0.32
UPF1-204ENST00000596842 GPR146Q96CH1 333 aa13.05□□□□□ -0.32
UPF1-204ENST00000596842 TMEM208Q9BTX3 173 aa13.05□□□□□ -0.32
UPF1-204ENST00000596842 PLA2G3Q9NZ20 509 aa13.05□□□□□ -0.32
UPF1-204ENST00000596842 IGKV1-6A0A0C4DH72 117 aa13.04□□□□□ -0.32
UPF1-204ENST00000596842 SRD5A2P31213 254 aa13.04□□□□□ -0.32
UPF1-204ENST00000596842 PCED1AQ9H1Q7 454 aa13.04□□□□□ -0.32
UPF1-204ENST00000596842 LAMP3Q9UQV4 416 aa13.04□□□□□ -0.32
UPF1-204ENST00000596842 ROS1P08922 2347 aa13.04□□□□□ -0.32
UPF1-204ENST00000596842 TOMM20LQ6UXN7 152 aa13.04□□□□□ -0.32
UPF1-204ENST00000596842 MED12LQ86YW9 2145 aa13.04□□□□□ -0.32
UPF1-204ENST00000596842 PLPPR2Q96GM1 343 aa13.04□□□□□ -0.32
UPF1-204ENST00000596842 FOXJ2Q9P0K8 574 aa13.04□□□□□ -0.32
UPF1-204ENST00000596842 UBE2L5PA0A1B0GUS4 154 aa13.04□□□□□ -0.32
UPF1-204ENST00000596842 ZNF320A2RRD8 509 aa13.04□□□□□ -0.32
UPF1-204ENST00000596842 XKRY2A2RUG3 117 aa13.04□□□□□ -0.32
UPF1-204ENST00000596842 HIST1H2BKO60814 126 aa13.04□□□□□ -0.32
UPF1-204ENST00000596842 HIST1H2BJP06899 126 aa13.04□□□□□ -0.32
UPF1-204ENST00000596842 HIST1H2BOP23527 126 aa13.04□□□□□ -0.32
UPF1-204ENST00000596842 HIST1H2BBP33778 126 aa13.04□□□□□ -0.32
UPF1-204ENST00000596842 CYB561P49447 251 aa13.04□□□□□ -0.32
UPF1-204ENST00000596842 HIST1H2BDP58876 126 aa13.04□□□□□ -0.32
UPF1-204ENST00000596842 HIST1H2BCP62807 126 aa13.04□□□□□ -0.32
UPF1-204ENST00000596842 HLA-DRB3P79483 266 aa13.04□□□□□ -0.32
UPF1-204ENST00000596842 HOXA4Q00056 320 aaPredicted RBP13.04□□□□□ -0.32
UPF1-204ENST00000596842 HIST2H2BEQ16778 126 aa13.04□□□□□ -0.32
UPF1-204ENST00000596842 HIST2H2BFQ5QNW6 126 aaPredicted RBP13.04□□□□□ -0.32
UPF1-204ENST00000596842 TDHQ8IZJ6 230 aa13.04□□□□□ -0.32
UPF1-204ENST00000596842 ZNF808Q8N4W9 903 aaPredicted RBP13.04□□□□□ -0.32
UPF1-204ENST00000596842 HIST1H2BHQ93079 126 aa13.04□□□□□ -0.32
UPF1-204ENST00000596842 HLA-CQ95604 372 aa13.04□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms