RNA–Protein interactions for RNA: ENST00000593099.5

LIG3-216, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 4,664 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-216ENST00000593099 WDFY2Q96P53 400 aa8.43□□□□□ -1.06
LIG3-216ENST00000593099 PKDREJQ9NTG1 2253 aa8.42□□□□□ -1.06
LIG3-216ENST00000593099 IGHV1-18A0A0C4DH31 117 aa8.42□□□□□ -1.06
LIG3-216ENST00000593099 CEACAM4O75871 244 aa8.42□□□□□ -1.06
LIG3-216ENST00000593099 TPT1P13693 172 aaKnown RBP8.42□□□□□ -1.06
LIG3-216ENST00000593099 AADACP22760 399 aa8.42□□□□□ -1.06
LIG3-216ENST00000593099 FPR2P25090 351 aa8.42□□□□□ -1.06
LIG3-216ENST00000593099 KIR2DS2P43631 304 aa8.42□□□□□ -1.06
LIG3-216ENST00000593099 FOXG1P55316 489 aaPredicted RBP8.42□□□□□ -1.06
LIG3-216ENST00000593099 HLA-DRB3P79483 266 aa8.42□□□□□ -1.06
LIG3-216ENST00000593099 FABP9Q0Z7S8 132 aa8.42□□□□□ -1.06
LIG3-216ENST00000593099 MPPED2Q15777 294 aa8.42□□□□□ -1.06
LIG3-216ENST00000593099 BAGE3Q86Y29 109 aa8.42□□□□□ -1.06
LIG3-216ENST00000593099 BAGE2Q86Y30 109 aa8.42□□□□□ -1.06
LIG3-216ENST00000593099 OR5P3Q8WZ94 311 aa8.42□□□□□ -1.06
LIG3-216ENST00000593099 REPIN1Q9BWE0 567 aaKnown RBP8.42□□□□□ -1.06
LIG3-216ENST00000593099 GNB4Q9HAV0 340 aa8.42□□□□□ -1.06
LIG3-216ENST00000593099 INSIG2Q9Y5U4 225 aa8.42□□□□□ -1.06
LIG3-216ENST00000593099 FAM90A10PA6NDY2 464 aa8.42□□□□□ -1.06
LIG3-216ENST00000593099 FAM90A18PA6NE21 464 aa8.42□□□□□ -1.06
LIG3-216ENST00000593099 FAM90A16PA6NEW6 464 aa8.42□□□□□ -1.06
LIG3-216ENST00000593099 FAM90A20PA6NIJ5 464 aa8.42□□□□□ -1.06
LIG3-216ENST00000593099 FAM90A8PA6NJQ4 464 aa8.42□□□□□ -1.06
LIG3-216ENST00000593099 FAM90A7PA6NKC0 464 aa8.42□□□□□ -1.06
LIG3-216ENST00000593099 FAM90A22PA8MWA6 464 aa8.42□□□□□ -1.06
LIG3-216ENST00000593099 FAM90A12PA8MX19 464 aa8.42□□□□□ -1.06
LIG3-216ENST00000593099 FAM90A5PA8MXJ8 464 aa8.42□□□□□ -1.06
LIG3-216ENST00000593099 FAM90A23PA8MXZ1 464 aa8.42□□□□□ -1.06
LIG3-216ENST00000593099 OR10J4P0C629 311 aa8.42□□□□□ -1.06
LIG3-216ENST00000593099 FAM90A15PP0C7V4 464 aa8.42□□□□□ -1.06
LIG3-216ENST00000593099 FAM90A13PP0C7W8 464 aa8.42□□□□□ -1.06
LIG3-216ENST00000593099 FAM90A14PP0C7W9 464 aa8.42□□□□□ -1.06
LIG3-216ENST00000593099 FAM90A24PP0C7X0 464 aa8.42□□□□□ -1.06
LIG3-216ENST00000593099 DAOP14920 347 aa8.42□□□□□ -1.06
LIG3-216ENST00000593099 MUC1P15941 1255 aaPredicted RBP8.42□□□□□ -1.06
LIG3-216ENST00000593099 UBA52P62987 128 aaKnown RBP8.42□□□□□ -1.06
LIG3-216ENST00000593099 HTD2P86397 168 aa8.42□□□□□ -1.06
LIG3-216ENST00000593099 FCN2Q15485 313 aa8.42□□□□□ -1.06
LIG3-216ENST00000593099 CNTNAP3Q9BZ76 1288 aa8.42□□□□□ -1.06
LIG3-216ENST00000593099 TNFRSF19Q9NS68 423 aa8.42□□□□□ -1.06
LIG3-216ENST00000593099 SLC35D1Q9NTN3 355 aa8.42□□□□□ -1.06
LIG3-216ENST00000593099 PUS1Q9Y606 427 aaKnown RBP eCLIP8.42□□□□□ -1.06
LIG3-216ENST00000593099 AKAP6Q13023 2319 aa8.42□□□□□ -1.06
LIG3-216ENST00000593099 TRAV39A0A0B4J263 110 aa8.42□□□□□ -1.06
LIG3-216ENST00000593099 YIF1AO95070 293 aa8.42□□□□□ -1.06
LIG3-216ENST00000593099 NXPH3O95157 252 aa8.42□□□□□ -1.06
LIG3-216ENST00000593099 CDKN1AP38936 164 aa8.42□□□□□ -1.06
LIG3-216ENST00000593099 LINC00518Q8N0U6 118 aa8.42□□□□□ -1.06
LIG3-216ENST00000593099 ZNRF4Q8WWF5 429 aa8.42□□□□□ -1.06
LIG3-216ENST00000593099 SOX7Q9BT81 388 aa8.42□□□□□ -1.06
LIG3-216ENST00000593099 HRH4Q9H3N8 390 aa8.42□□□□□ -1.06
LIG3-216ENST00000593099 PROK2Q9HC23 129 aa8.42□□□□□ -1.06
LIG3-216ENST00000593099 TRBV5-7A0A0A0MS05 114 aa8.42□□□□□ -1.06
LIG3-216ENST00000593099 A0A1B0GW15 77 aa8.42□□□□□ -1.06
LIG3-216ENST00000593099 SLC31A2O15432 143 aa8.42□□□□□ -1.06
LIG3-216ENST00000593099 LMX1BO60663 402 aa8.42□□□□□ -1.06
LIG3-216ENST00000593099 OR2H2O95918 312 aa8.42□□□□□ -1.06
LIG3-216ENST00000593099 KRASP01116 189 aa8.42□□□□□ -1.06
LIG3-216ENST00000593099 PKIAP61925 76 aa8.42□□□□□ -1.06
LIG3-216ENST00000593099 GCSAMQ8N6F7 178 aa8.42□□□□□ -1.06
LIG3-216ENST00000593099 PGLYRP3Q96LB9 341 aa8.42□□□□□ -1.06
LIG3-216ENST00000593099 CIB3Q96Q77 187 aaPredicted RBP8.42□□□□□ -1.06
LIG3-216ENST00000593099 ARID1AO14497 2285 aa8.41□□□□□ -1.06
LIG3-216ENST00000593099 LOC105371242A0A075B767 164 aa8.41□□□□□ -1.06
LIG3-216ENST00000593099 A0A087WV48 116 aa8.41□□□□□ -1.06
LIG3-216ENST00000593099 C17orf112F2Z3M2 114 aa8.41□□□□□ -1.06
LIG3-216ENST00000593099 COMPP49747 757 aaPredicted RBP8.41□□□□□ -1.06
LIG3-216ENST00000593099 UBE2V2Q15819 145 aa8.41□□□□□ -1.06
LIG3-216ENST00000593099 C1orf100Q5SVJ3 147 aa8.41□□□□□ -1.06
LIG3-216ENST00000593099 CADM3Q8N126 398 aa8.41□□□□□ -1.06
LIG3-216ENST00000593099 EIF4E3Q8N5X7 224 aaKnown RBP8.41□□□□□ -1.06
LIG3-216ENST00000593099 IL36GQ9NZH8 169 aa8.41□□□□□ -1.06
LIG3-216ENST00000593099 DKK4Q9UBT3 224 aa8.41□□□□□ -1.06
LIG3-216ENST00000593099 FBLL1A6NHQ2 334 aaKnown RBP8.41□□□□□ -1.06
LIG3-216ENST00000593099 F6UZH7 168 aa8.41□□□□□ -1.06
LIG3-216ENST00000593099 CCSO14618 274 aa8.41□□□□□ -1.06
LIG3-216ENST00000593099 PDE6DO43924 150 aa8.41□□□□□ -1.06
LIG3-216ENST00000593099 ADRA2CP18825 462 aa8.41□□□□□ -1.06
LIG3-216ENST00000593099 SPCS3P61009 180 aa8.41□□□□□ -1.06
LIG3-216ENST00000593099 TMEM128Q5BJH2 165 aa8.41□□□□□ -1.06
LIG3-216ENST00000593099 IGFL2Q6UWQ7 119 aa8.41□□□□□ -1.06
LIG3-216ENST00000593099 TPRX1Q8N7U7 411 aa8.41□□□□□ -1.06
LIG3-216ENST00000593099 OR4A4PQ8NGN8 299 aa8.41□□□□□ -1.06
LIG3-216ENST00000593099 TMEM56Q96MV1 263 aa8.41□□□□□ -1.06
LIG3-216ENST00000593099 VAMP8Q9BV40 100 aa8.41□□□□□ -1.06
LIG3-216ENST00000593099 PIPOXQ9P0Z9 390 aa8.41□□□□□ -1.06
LIG3-216ENST00000593099 PPIAL4CA0A0B4J2A2 164 aa8.41□□□□□ -1.06
LIG3-216ENST00000593099 IQCF6A8MYZ5 107 aa8.41□□□□□ -1.06
LIG3-216ENST00000593099 SMAD7O15105 426 aaKnown RBP8.41□□□□□ -1.06
LIG3-216ENST00000593099 PPIAL4GP0DN37 164 aa8.41□□□□□ -1.06
LIG3-216ENST00000593099 ZNF362Q5T0B9 420 aaPredicted RBP8.41□□□□□ -1.06
LIG3-216ENST00000593099 SAMD13Q5VXD3 122 aa8.41□□□□□ -1.06
LIG3-216ENST00000593099 TMEM88Q6PEY1 159 aa8.41□□□□□ -1.06
LIG3-216ENST00000593099 C20orf204Q6ZNR8 217 aa8.41□□□□□ -1.06
LIG3-216ENST00000593099 SEPSECSQ9HD40 501 aaKnown RBP8.41□□□□□ -1.06
LIG3-216ENST00000593099 SLC25A15Q9Y619 301 aa8.41□□□□□ -1.06
LIG3-216ENST00000593099 NOTCH2Q04721 2471 aa8.41□□□□□ -1.06
LIG3-216ENST00000593099 LPAR6P43657 344 aa8.41□□□□□ -1.06
LIG3-216ENST00000593099 BPIFB3P59826 476 aa8.41□□□□□ -1.06
LIG3-216ENST00000593099 RRAS2P62070 204 aaPredicted RBP8.41□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms