RNA–Protein interactions for RNA: ENST00000588323.1

VPS4B-203, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 3

Gene VPS4B, Length 463 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-203ENST00000588323 CD70P32970 193 aa2.04□□□□□ -2.08
VPS4B-203ENST00000588323 MPIP34949 423 aa2.04□□□□□ -2.08
VPS4B-203ENST00000588323 NUDT1P36639 197 aa2.04□□□□□ -2.08
VPS4B-203ENST00000588323 TALDO1P37837 337 aa2.04□□□□□ -2.08
VPS4B-203ENST00000588323 MTORP42345 2549 aa2.04□□□□□ -2.08
VPS4B-203ENST00000588323 CXCL5P42830 114 aa2.04□□□□□ -2.08
VPS4B-203ENST00000588323 SLCO1A2P46721 670 aa2.04□□□□□ -2.08
VPS4B-203ENST00000588323 TGM4P49221 684 aa2.04□□□□□ -2.08
VPS4B-203ENST00000588323 SYNJ2BPP57105 145 aa2.04□□□□□ -2.08
VPS4B-203ENST00000588323 KRTAP10-10P60014 251 aa2.04□□□□□ -2.08
VPS4B-203ENST00000588323 SNAP25P60880 206 aa2.04□□□□□ -2.08
VPS4B-203ENST00000588323 IL5RAQ01344 420 aa2.04□□□□□ -2.08
VPS4B-203ENST00000588323 MN1Q10571 1320 aaPredicted RBP2.04□□□□□ -2.08
VPS4B-203ENST00000588323 DAZ2Q13117 558 aaKnown RBP2.04□□□□□ -2.08
VPS4B-203ENST00000588323 IL17AQ16552 155 aa2.04□□□□□ -2.08
VPS4B-203ENST00000588323 RSPO1Q2MKA7 263 aaPredicted RBP2.04□□□□□ -2.08
VPS4B-203ENST00000588323 GREB1Q4ZG55 1949 aa2.04□□□□□ -2.08
VPS4B-203ENST00000588323 PDZD11Q5EBL8 140 aa2.04□□□□□ -2.08
VPS4B-203ENST00000588323 OTPQ5XKR4 325 aa2.04□□□□□ -2.08
VPS4B-203ENST00000588323 FBXW9Q5XUX1 488 aa2.04□□□□□ -2.08
VPS4B-203ENST00000588323 STEAP4Q687X5 459 aa2.04□□□□□ -2.08
VPS4B-203ENST00000588323 Q6ZT83 130 aa2.04□□□□□ -2.08
VPS4B-203ENST00000588323 C3orf62Q6ZUJ4 267 aa2.04□□□□□ -2.08
VPS4B-203ENST00000588323 C6orf120Q7Z4R8 191 aa2.04□□□□□ -2.08
VPS4B-203ENST00000588323 TMED4Q7Z7H5 227 aa2.04□□□□□ -2.08
VPS4B-203ENST00000588323 MRPL52Q86TS9 123 aaKnown RBP2.04□□□□□ -2.08
VPS4B-203ENST00000588323 DHFR2Q86XF0 187 aa2.04□□□□□ -2.08
VPS4B-203ENST00000588323 HS3ST5Q8IZT8 346 aa2.04□□□□□ -2.08
VPS4B-203ENST00000588323 PGAM4Q8N0Y7 254 aa2.04□□□□□ -2.08
VPS4B-203ENST00000588323 Q8N402 240 aa2.04□□□□□ -2.08
VPS4B-203ENST00000588323 RIBC1Q8N443 379 aaPredicted RBP2.04□□□□□ -2.08
VPS4B-203ENST00000588323 STX19Q8N4C7 294 aa2.04□□□□□ -2.08
VPS4B-203ENST00000588323 OR8G5Q8NG78 346 aa2.04□□□□□ -2.08
VPS4B-203ENST00000588323 OR10G4Q8NGN3 311 aa2.04□□□□□ -2.08
VPS4B-203ENST00000588323 PATJQ8NI35 1801 aa2.04□□□□□ -2.08
VPS4B-203ENST00000588323 SFXN5Q8TD22 340 aa2.04□□□□□ -2.08
VPS4B-203ENST00000588323 BLOC1S5Q8TDH9 187 aa2.04□□□□□ -2.08
VPS4B-203ENST00000588323 RNF133Q8WVZ7 376 aa2.04□□□□□ -2.08
VPS4B-203ENST00000588323 C22orf15Q8WYQ4 148 aa2.04□□□□□ -2.08
VPS4B-203ENST00000588323 RORBQ92753 470 aa2.04□□□□□ -2.08
VPS4B-203ENST00000588323 RDH5Q92781 318 aa2.04□□□□□ -2.08
VPS4B-203ENST00000588323 FGF13Q92913 245 aa2.04□□□□□ -2.08
VPS4B-203ENST00000588323 HGDQ93099 445 aa2.04□□□□□ -2.08
VPS4B-203ENST00000588323 ELSPBP1Q96BH3 223 aa2.04□□□□□ -2.08
VPS4B-203ENST00000588323 SPG11Q96JI7 2443 aa2.04□□□□□ -2.08
VPS4B-203ENST00000588323 FAM19A4Q96LR4 140 aa2.04□□□□□ -2.08
VPS4B-203ENST00000588323 Q96MT0 163 aa2.04□□□□□ -2.08
VPS4B-203ENST00000588323 RILPQ96NA2 401 aa2.04□□□□□ -2.08
VPS4B-203ENST00000588323 PFDN5Q99471 154 aa2.04□□□□□ -2.08
VPS4B-203ENST00000588323 HDHD3Q9BSH5 251 aaPredicted RBP2.04□□□□□ -2.08
VPS4B-203ENST00000588323 BCL2L14Q9BZR8 327 aa2.04□□□□□ -2.08
VPS4B-203ENST00000588323 YIPF3Q9GZM5 350 aa2.04□□□□□ -2.08
VPS4B-203ENST00000588323 PCBD2Q9H0N5 130 aa2.04□□□□□ -2.08
VPS4B-203ENST00000588323 CDC42EP4Q9H3Q1 356 aaKnown RBP2.04□□□□□ -2.08
VPS4B-203ENST00000588323 ZNF532Q9HCE3 1301 aa2.04□□□□□ -2.08
VPS4B-203ENST00000588323 DAZ3Q9NR90 486 aaKnown RBP2.04□□□□□ -2.08
VPS4B-203ENST00000588323 TMEM100Q9NV29 134 aa2.04□□□□□ -2.08
VPS4B-203ENST00000588323 IMP3Q9NV31 184 aaKnown RBP2.04□□□□□ -2.08
VPS4B-203ENST00000588323 NLE1Q9NVX2 485 aaPredicted RBP2.04□□□□□ -2.08
VPS4B-203ENST00000588323 C1orf109Q9NX04 203 aa2.04□□□□□ -2.08
VPS4B-203ENST00000588323 OPN4Q9UHM6 478 aa2.04□□□□□ -2.08
VPS4B-203ENST00000588323 VAX2Q9UIW0 290 aa2.04□□□□□ -2.08
VPS4B-203ENST00000588323 NDRG2Q9UN36 371 aaKnown RBP2.04□□□□□ -2.08
VPS4B-203ENST00000588323 SLC7A11Q9UPY5 501 aa2.04□□□□□ -2.08
VPS4B-203ENST00000588323 SLC22A13Q9Y226 551 aa2.04□□□□□ -2.08
VPS4B-203ENST00000588323 FARSAQ9Y285 508 aaKnown RBP2.04□□□□□ -2.08
VPS4B-203ENST00000588323 TP53TG5Q9Y2B4 290 aa2.04□□□□□ -2.08
VPS4B-203ENST00000588323 TBL2Q9Y4P3 447 aaKnown RBP2.04□□□□□ -2.08
VPS4B-203ENST00000588323 HES2Q9Y543 173 aa2.04□□□□□ -2.08
VPS4B-203ENST00000588323 LAMA1P25391 3075 aa2.04□□□□□ -2.08
VPS4B-203ENST00000588323 FLNCQ14315 2725 aa2.04□□□□□ -2.08
VPS4B-203ENST00000588323 SPTBN1Q01082 2364 aaKnown RBP2.03□□□□□ -2.08
VPS4B-203ENST00000588323 ASCC3Q8N3C0 2202 aaKnown RBP2.03□□□□□ -2.08
VPS4B-203ENST00000588323 DOCK8Q8NF50 2099 aa2.03□□□□□ -2.08
VPS4B-203ENST00000588323 MYH1P12882 1939 aa2.03□□□□□ -2.08
VPS4B-203ENST00000588323 PLXNA4Q9HCM2 1894 aa2.03□□□□□ -2.08
VPS4B-203ENST00000588323 ITPR2Q14571 2701 aa2.03□□□□□ -2.08
VPS4B-203ENST00000588323 IGKV1-8A0A0C4DH67 115 aa2.03□□□□□ -2.08
VPS4B-203ENST00000588323 A0A1W2PQ67 120 aa2.03□□□□□ -2.08
VPS4B-203ENST00000588323 ZNF98A6NK75 572 aa2.03□□□□□ -2.08
VPS4B-203ENST00000588323 ZNF729A6NN14 1252 aaPredicted RBP2.03□□□□□ -2.08
VPS4B-203ENST00000588323 F8W036 122 aa2.03□□□□□ -2.08
VPS4B-203ENST00000588323 J3QT63 122 aa2.03□□□□□ -2.08
VPS4B-203ENST00000588323 TNFRSF11BO00300 401 aa2.03□□□□□ -2.08
VPS4B-203ENST00000588323 CCRL2O00421 344 aa2.03□□□□□ -2.08
VPS4B-203ENST00000588323 MYL12BO14950 172 aa2.03□□□□□ -2.08
VPS4B-203ENST00000588323 NDUFA2O43678 99 aa2.03□□□□□ -2.08
VPS4B-203ENST00000588323 SHOX2O60902 331 aaPredicted RBP2.03□□□□□ -2.08
VPS4B-203ENST00000588323 GLSO94925 669 aaPredicted RBP2.03□□□□□ -2.08
VPS4B-203ENST00000588323 VAMP5O95183 116 aa2.03□□□□□ -2.08
VPS4B-203ENST00000588323 ATP6V1G2O95670 118 aa2.03□□□□□ -2.08
VPS4B-203ENST00000588323 MMP7P09237 267 aaPredicted RBP2.03□□□□□ -2.08
VPS4B-203ENST00000588323 COX4I1P13073 169 aa2.03□□□□□ -2.08
VPS4B-203ENST00000588323 UCHL3P15374 230 aa2.03□□□□□ -2.08
VPS4B-203ENST00000588323 F8A1P23610 371 aa2.03□□□□□ -2.08
VPS4B-203ENST00000588323 S100PP25815 95 aa2.03□□□□□ -2.08
VPS4B-203ENST00000588323 PHBP35232 272 aa2.03□□□□□ -2.08
VPS4B-203ENST00000588323 RCVRNP35243 200 aa2.03□□□□□ -2.08
VPS4B-203ENST00000588323 SSTR5P35346 364 aa2.03□□□□□ -2.08
VPS4B-203ENST00000588323 IDH2P48735 452 aaKnown RBP2.03□□□□□ -2.08
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms