RNA–Protein interactions for RNA: ENST00000586435.1

LIG3-209, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 588 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-209ENST00000586435 TMPRSS11AQ6ZMR5 421 aa9.24□□□□□ -0.93
LIG3-209ENST00000586435 ZNF554Q86TJ5 538 aa9.24□□□□□ -0.93
LIG3-209ENST00000586435 ZNF491Q8N8L2 437 aa9.24□□□□□ -0.93
LIG3-209ENST00000586435 ETAA1Q9NY74 926 aa9.24□□□□□ -0.93
LIG3-209ENST00000586435 TRAPPC2LQ9UL33 140 aa9.24□□□□□ -0.93
LIG3-209ENST00000586435 SMAD5-AS1Q9Y6J3 95 aa9.24□□□□□ -0.93
LIG3-209ENST00000586435 IRGMA1A4Y4 181 aa9.23□□□□□ -0.93
LIG3-209ENST00000586435 MAGEA13PA6NCF6 341 aa9.23□□□□□ -0.93
LIG3-209ENST00000586435 WBP4O75554 376 aaKnown RBP9.23□□□□□ -0.93
LIG3-209ENST00000586435 IGLV1-40P01703 118 aa9.23□□□□□ -0.93
LIG3-209ENST00000586435 GLAP06280 429 aa9.23□□□□□ -0.93
LIG3-209ENST00000586435 SLC2A2P11168 524 aaPredicted RBP9.23□□□□□ -0.93
LIG3-209ENST00000586435 ETV1P50549 477 aa9.23□□□□□ -0.93
LIG3-209ENST00000586435 Q499Y3 187 aa9.23□□□□□ -0.93
LIG3-209ENST00000586435 YIF1BQ5BJH7 314 aa9.23□□□□□ -0.93
LIG3-209ENST00000586435 OR2G6Q5TZ20 316 aa9.23□□□□□ -0.93
LIG3-209ENST00000586435 RAB12Q6IQ22 244 aa9.23□□□□□ -0.93
LIG3-209ENST00000586435 ZNF429Q86V71 674 aa9.23□□□□□ -0.93
LIG3-209ENST00000586435 CDH26Q8IXH8 852 aa9.23□□□□□ -0.93
LIG3-209ENST00000586435 OR10V1Q8NGI7 309 aa9.23□□□□□ -0.93
LIG3-209ENST00000586435 OR4K15Q8NH41 348 aa9.23□□□□□ -0.93
LIG3-209ENST00000586435 OR1L1Q8NH94 360 aa9.23□□□□□ -0.93
LIG3-209ENST00000586435 ORAI1Q96D31 301 aa9.23□□□□□ -0.93
LIG3-209ENST00000586435 RDH12Q96NR8 316 aa9.23□□□□□ -0.93
LIG3-209ENST00000586435 SLC29A1Q99808 456 aa9.23□□□□□ -0.93
LIG3-209ENST00000586435 ASCL2Q99929 193 aa9.23□□□□□ -0.93
LIG3-209ENST00000586435 OR51J1Q9H342 316 aa9.23□□□□□ -0.93
LIG3-209ENST00000586435 GNB4Q9HAV0 340 aa9.23□□□□□ -0.93
LIG3-209ENST00000586435 MBNL3Q9NUK0 354 aaKnown RBP9.23□□□□□ -0.93
LIG3-209ENST00000586435 CKLFQ9UBR5 152 aa9.23□□□□□ -0.93
LIG3-209ENST00000586435 JPT1Q9UK76 154 aa9.23□□□□□ -0.93
LIG3-209ENST00000586435 VSIG4Q9Y279 399 aa9.23□□□□□ -0.93
LIG3-209ENST00000586435 ATP6V0E1O15342 81 aa9.22□□□□□ -0.93
LIG3-209ENST00000586435 RCC1P18754 421 aaPredicted RBP9.22□□□□□ -0.93
LIG3-209ENST00000586435 MYF6P23409 242 aa9.22□□□□□ -0.93
LIG3-209ENST00000586435 ACTBP60709 375 aa9.22□□□□□ -0.93
LIG3-209ENST00000586435 RPS11P62280 158 aaKnown RBP eCLIP9.22□□□□□ -0.93
LIG3-209ENST00000586435 MORN2Q502X0 79 aa9.22□□□□□ -0.93
LIG3-209ENST00000586435 LY6G6FQ5SQ64 297 aa9.22□□□□□ -0.93
LIG3-209ENST00000586435 DMKNQ6E0U4 476 aaPredicted RBP9.22□□□□□ -0.93
LIG3-209ENST00000586435 TMEM65Q6PI78 240 aa9.22□□□□□ -0.93
LIG3-209ENST00000586435 OR1N2Q8NGR9 330 aa9.22□□□□□ -0.93
LIG3-209ENST00000586435 OR13C5Q8NGS8 318 aa9.22□□□□□ -0.93
LIG3-209ENST00000586435 GHSRQ92847 366 aa9.22□□□□□ -0.93
LIG3-209ENST00000586435 MUL1Q969V5 352 aa9.22□□□□□ -0.93
LIG3-209ENST00000586435 PGLYRP3Q96LB9 341 aa9.22□□□□□ -0.93
LIG3-209ENST00000586435 ABHD14AQ9BUJ0 271 aa9.22□□□□□ -0.93
LIG3-209ENST00000586435 KLK15Q9H2R5 256 aa9.22□□□□□ -0.93
LIG3-209ENST00000586435 TAF9BQ9HBM6 251 aa9.22□□□□□ -0.93
LIG3-209ENST00000586435 ISYNA1Q9NPH2 558 aa9.22□□□□□ -0.93
LIG3-209ENST00000586435 OR2S2Q9NQN1 319 aa9.22□□□□□ -0.93
LIG3-209ENST00000586435 BABAM2Q9NXR7 383 aa9.22□□□□□ -0.93
LIG3-209ENST00000586435 DIMT1Q9UNQ2 313 aaKnown RBP9.22□□□□□ -0.93
LIG3-209ENST00000586435 MRPS28Q9Y2Q9 187 aaKnown RBP9.22□□□□□ -0.93
LIG3-209ENST00000586435 DNAH7Q8WXX0 4024 aa9.21□□□□□ -0.93
LIG3-209ENST00000586435 TRAV8-7A0A075B6U6 113 aa9.21□□□□□ -0.94
LIG3-209ENST00000586435 IGHV7-81A0A0B4J1V7 117 aa9.21□□□□□ -0.94
LIG3-209ENST00000586435 TRAV41A0A0B4J266 112 aa9.21□□□□□ -0.94
LIG3-209ENST00000586435 G3V318 75 aa9.21□□□□□ -0.94
LIG3-209ENST00000586435 NBR2O15453 112 aa9.21□□□□□ -0.94
LIG3-209ENST00000586435 NDUFA3O95167 84 aa9.21□□□□□ -0.94
LIG3-209ENST00000586435 LALBAP00709 142 aa9.21□□□□□ -0.94
LIG3-209ENST00000586435 MYL12AP19105 171 aa9.21□□□□□ -0.94
LIG3-209ENST00000586435 RAB9AP51151 201 aa9.21□□□□□ -0.94
LIG3-209ENST00000586435 CRIP2P52943 208 aaPredicted RBP9.21□□□□□ -0.94
LIG3-209ENST00000586435 GNB1P62873 340 aa9.21□□□□□ -0.94
LIG3-209ENST00000586435 ADARB1P78563 741 aaKnown RBP9.21□□□□□ -0.94
LIG3-209ENST00000586435 HTD2P86397 168 aa9.21□□□□□ -0.94
LIG3-209ENST00000586435 SMN1Q16637 294 aaKnown RBP9.21□□□□□ -0.94
LIG3-209ENST00000586435 FAM27D1Q5T7N8 215 aa9.21□□□□□ -0.94
LIG3-209ENST00000586435 AWAT2Q6E213 333 aa9.21□□□□□ -0.94
LIG3-209ENST00000586435 GLIPR1L1Q6UWM5 242 aa9.21□□□□□ -0.94
LIG3-209ENST00000586435 LYPD6Q86Y78 171 aa9.21□□□□□ -0.94
LIG3-209ENST00000586435 ODF3L1Q8IXM7 274 aa9.21□□□□□ -0.94
LIG3-209ENST00000586435 C10orf67Q8IYJ2 551 aa9.21□□□□□ -0.94
LIG3-209ENST00000586435 PRR18Q8N4B5 295 aa9.21□□□□□ -0.94
LIG3-209ENST00000586435 MINDY2Q8NBR6 621 aa9.21□□□□□ -0.94
LIG3-209ENST00000586435 NPBQ8NG41 125 aa9.21□□□□□ -0.94
LIG3-209ENST00000586435 MUC7Q8TAX7 377 aa9.21□□□□□ -0.94
LIG3-209ENST00000586435 RBMXL1Q96E39 390 aaKnown RBP9.21□□□□□ -0.94
LIG3-209ENST00000586435 Q96M66 194 aa9.21□□□□□ -0.94
LIG3-209ENST00000586435 NABP2Q9BQ15 211 aa9.21□□□□□ -0.94
LIG3-209ENST00000586435 EXOSC1Q9Y3B2 195 aaKnown RBP9.21□□□□□ -0.94
LIG3-209ENST00000586435 PEX16Q9Y5Y5 336 aa9.21□□□□□ -0.94
LIG3-209ENST00000586435 HUWE1Q7Z6Z7 4374 aaKnown RBP9.21□□□□□ -0.94
LIG3-209ENST00000586435 TRBV5-7A0A0A0MS05 114 aa9.2□□□□□ -0.94
LIG3-209ENST00000586435 OVOL1O14753 267 aa9.2□□□□□ -0.94
LIG3-209ENST00000586435 YPEL1O60688 119 aa9.2□□□□□ -0.94
LIG3-209ENST00000586435 RGS11O94810 467 aa9.2□□□□□ -0.94
LIG3-209ENST00000586435 LY86O95711 162 aa9.2□□□□□ -0.94
LIG3-209ENST00000586435 MGMTP16455 207 aa9.2□□□□□ -0.94
LIG3-209ENST00000586435 FUT3P21217 361 aa9.2□□□□□ -0.94
LIG3-209ENST00000586435 C5orf64Q2M2E5 130 aa9.2□□□□□ -0.94
LIG3-209ENST00000586435 C19orf54Q5BKX5 351 aa9.2□□□□□ -0.94
LIG3-209ENST00000586435 CASC10Q5T4H9 136 aa9.2□□□□□ -0.94
LIG3-209ENST00000586435 SIGIRRQ6IA17 410 aa9.2□□□□□ -0.94
LIG3-209ENST00000586435 FAM71F2Q6NXP2 309 aa9.2□□□□□ -0.94
LIG3-209ENST00000586435 ZNF833PQ6ZTB9 187 aa9.2□□□□□ -0.94
LIG3-209ENST00000586435 JAGN1Q8N5M9 183 aa9.2□□□□□ -0.94
LIG3-209ENST00000586435 TCTEX1D1Q8N7M0 179 aa9.2□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 45 ms