RNA–Protein interactions for RNA: ENST00000580958.5

SS18-217, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 775 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-217ENST00000580958 RDH8Q9NYR8 311 aa8.75□□□□□ -1.01
SS18-217ENST00000580958 SHPKQ9UHJ6 478 aa8.75□□□□□ -1.01
SS18-217ENST00000580958 RALYQ9UKM9 306 aaKnown RBP8.75□□□□□ -1.01
SS18-217ENST00000580958 OR2W1Q9Y3N9 320 aa8.75□□□□□ -1.01
SS18-217ENST00000580958 DBX1A6NMT0 343 aa8.74□□□□□ -1.01
SS18-217ENST00000580958 LYNX1G3V0Z9 82 aa8.74□□□□□ -1.01
SS18-217ENST00000580958 G3V3Q6 166 aa8.74□□□□□ -1.01
SS18-217ENST00000580958 C15orf65H3BRN8 121 aa8.74□□□□□ -1.01
SS18-217ENST00000580958 GPR31O00270 319 aa8.74□□□□□ -1.01
SS18-217ENST00000580958 HEXAP06865 529 aa8.74□□□□□ -1.01
SS18-217ENST00000580958 SOD3P08294 240 aa8.74□□□□□ -1.01
SS18-217ENST00000580958 RNF224P0DH78 156 aa8.74□□□□□ -1.01
SS18-217ENST00000580958 LYNX1P0DP58 116 aa8.74□□□□□ -1.01
SS18-217ENST00000580958 COL8A2P25067 703 aa8.74□□□□□ -1.01
SS18-217ENST00000580958 ERP29P30040 261 aaKnown RBP8.74□□□□□ -1.01
SS18-217ENST00000580958 GNRHRP30968 328 aa8.74□□□□□ -1.01
SS18-217ENST00000580958 SSTR5P35346 364 aa8.74□□□□□ -1.01
SS18-217ENST00000580958 CEACAM6P40199 344 aa8.74□□□□□ -1.01
SS18-217ENST00000580958 RND3P61587 244 aa8.74□□□□□ -1.01
SS18-217ENST00000580958 GNMTQ14749 295 aa8.74□□□□□ -1.01
SS18-217ENST00000580958 KCNJ8Q15842 424 aa8.74□□□□□ -1.01
SS18-217ENST00000580958 Q5BKY6 102 aa8.74□□□□□ -1.01
SS18-217ENST00000580958 FAM53AQ6NSI3 398 aaPredicted RBP8.74□□□□□ -1.01
SS18-217ENST00000580958 ZNF818PQ6ZRF7 136 aa8.74□□□□□ -1.01
SS18-217ENST00000580958 FAM185AQ8N0U4 392 aa8.74□□□□□ -1.01
SS18-217ENST00000580958 RFESDQ8TAC1 157 aa8.74□□□□□ -1.01
SS18-217ENST00000580958 GALMQ96C23 342 aa8.74□□□□□ -1.01
SS18-217ENST00000580958 C14orf79Q96F83 325 aa8.74□□□□□ -1.01
SS18-217ENST00000580958 TRAF4Q9BUZ4 470 aaPredicted RBP8.74□□□□□ -1.01
SS18-217ENST00000580958 FAM234AQ9H0X4 552 aa8.74□□□□□ -1.01
SS18-217ENST00000580958 RANBP3Q9H6Z4 567 aaPredicted RBP8.74□□□□□ -1.01
SS18-217ENST00000580958 UBTD1Q9HAC8 227 aa8.74□□□□□ -1.01
SS18-217ENST00000580958 FBXO9Q9UK97 447 aaPredicted RBP8.74□□□□□ -1.01
SS18-217ENST00000580958 DOPEY1Q5JWR5 2465 aa8.74□□□□□ -1.01
SS18-217ENST00000580958 ZNF462Q96JM2 2506 aa8.74□□□□□ -1.01
SS18-217ENST00000580958 USP9XQ93008 2570 aaPredicted RBP8.73□□□□□ -1.01
SS18-217ENST00000580958 ARID1AO14497 2285 aa8.73□□□□□ -1.01
SS18-217ENST00000580958 FLNCQ14315 2725 aa8.73□□□□□ -1.01
SS18-217ENST00000580958 IGHV3-43A0A0B4J1X8 118 aa8.73□□□□□ -1.01
SS18-217ENST00000580958 A6NNC1 897 aa8.73□□□□□ -1.01
SS18-217ENST00000580958 FAM25EA8MYX2 175 aa8.73□□□□□ -1.01
SS18-217ENST00000580958 TNFRSF13BO14836 293 aaPredicted RBP8.73□□□□□ -1.01
SS18-217ENST00000580958 MPPED1O15442 326 aa8.73□□□□□ -1.01
SS18-217ENST00000580958 SPINT2O43291 252 aa8.73□□□□□ -1.01
SS18-217ENST00000580958 ADAM20O43506 726 aa8.73□□□□□ -1.01
SS18-217ENST00000580958 OR5AC1P0C628 307 aa8.73□□□□□ -1.01
SS18-217ENST00000580958 DANCRP0C864 163 aa8.73□□□□□ -1.01
SS18-217ENST00000580958 IGHV3-43DP0DP04 118 aa8.73□□□□□ -1.01
SS18-217ENST00000580958 HLA-GP17693 338 aa8.73□□□□□ -1.01
SS18-217ENST00000580958 PPP1CCP36873 323 aaKnown RBP8.73□□□□□ -1.01
SS18-217ENST00000580958 LUMP51884 338 aaPredicted RBP8.73□□□□□ -1.01
SS18-217ENST00000580958 TMEM187Q14656 261 aa8.73□□□□□ -1.01
SS18-217ENST00000580958 LTC4SQ16873 150 aa8.73□□□□□ -1.01
SS18-217ENST00000580958 HFEQ30201 348 aa8.73□□□□□ -1.01
SS18-217ENST00000580958 SP6Q3SY56 376 aa8.73□□□□□ -1.01
SS18-217ENST00000580958 LYPD2Q6UXB3 125 aa8.73□□□□□ -1.01
SS18-217ENST00000580958 TBC1D26Q86UD7 250 aa8.73□□□□□ -1.01
SS18-217ENST00000580958 DTX2Q86UW9 622 aa8.73□□□□□ -1.01
SS18-217ENST00000580958 LINC00528Q8N1L1 170 aa8.73□□□□□ -1.01
SS18-217ENST00000580958 OR11H4Q8NGC9 324 aa8.73□□□□□ -1.01
SS18-217ENST00000580958 HYLS1Q96M11 299 aa8.73□□□□□ -1.01
SS18-217ENST00000580958 GPHA2Q96T91 129 aa8.73□□□□□ -1.01
SS18-217ENST00000580958 RAB1BQ9H0U4 201 aa8.73□□□□□ -1.01
SS18-217ENST00000580958 NCOR1P1Q9H4R4 102 aa8.73□□□□□ -1.01
SS18-217ENST00000580958 OPN4Q9UHM6 478 aa8.73□□□□□ -1.01
SS18-217ENST00000580958 KCNIP3Q9Y2W7 256 aa8.73□□□□□ -1.01
SS18-217ENST00000580958 MYO18BQ8IUG5 2567 aa8.73□□□□□ -1.01
SS18-217ENST00000580958 C5orf51A6NDU8 294 aa8.72□□□□□ -1.01
SS18-217ENST00000580958 TMPRSS2O15393 492 aa8.72□□□□□ -1.01
SS18-217ENST00000580958 PHF1O43189 567 aaPredicted RBP8.72□□□□□ -1.01
SS18-217ENST00000580958 ADAP1O75689 374 aa8.72□□□□□ -1.01
SS18-217ENST00000580958 HOXB5P09067 269 aa8.72□□□□□ -1.01
SS18-217ENST00000580958 OR8U9P0C7N5 309 aa8.72□□□□□ -1.01
SS18-217ENST00000580958 NDUFB7P17568 137 aa8.72□□□□□ -1.01
SS18-217ENST00000580958 GZMHP20718 246 aa8.72□□□□□ -1.01
SS18-217ENST00000580958 SRSF4Q08170 494 aaKnown RBP8.72□□□□□ -1.01
SS18-217ENST00000580958 CR1LQ2VPA4 569 aa8.72□□□□□ -1.01
SS18-217ENST00000580958 GSG1LQ6UXU4 331 aa8.72□□□□□ -1.01
SS18-217ENST00000580958 OR8U1Q8NH10 309 aa8.72□□□□□ -1.01
SS18-217ENST00000580958 GRPEL2Q8TAA5 225 aa8.72□□□□□ -1.01
SS18-217ENST00000580958 ASB13Q8WXK3 278 aa8.72□□□□□ -1.01
SS18-217ENST00000580958 NINJ1Q92982 152 aa8.72□□□□□ -1.01
SS18-217ENST00000580958 GALNT14Q96FL9 552 aa8.72□□□□□ -1.01
SS18-217ENST00000580958 SEC22AQ96IW7 307 aa8.72□□□□□ -1.01
SS18-217ENST00000580958 TMEM246Q9BRR3 403 aa8.72□□□□□ -1.01
SS18-217ENST00000580958 PDCD10Q9BUL8 212 aa8.72□□□□□ -1.01
SS18-217ENST00000580958 SUCNR1Q9BXA5 334 aa8.72□□□□□ -1.01
SS18-217ENST00000580958 TOLLIPQ9H0E2 274 aa8.72□□□□□ -1.01
SS18-217ENST00000580958 RAB18Q9NP72 206 aa8.72□□□□□ -1.01
SS18-217ENST00000580958 PLSCR3Q9NRY6 295 aa8.72□□□□□ -1.01
SS18-217ENST00000580958 CALYQ9NYX4 217 aa8.72□□□□□ -1.01
SS18-217ENST00000580958 OR6C3Q9NZP0 311 aa8.72□□□□□ -1.01
SS18-217ENST00000580958 SLC25A10Q9UBX3 287 aaPredicted RBP8.72□□□□□ -1.01
SS18-217ENST00000580958 KCNS2Q9ULS6 477 aa8.72□□□□□ -1.01
SS18-217ENST00000580958 LAMP3Q9UQV4 416 aa8.72□□□□□ -1.01
SS18-217ENST00000580958 RBM7Q9Y580 266 aaKnown RBP8.72□□□□□ -1.01
SS18-217ENST00000580958 LRBAP50851 2863 aa8.72□□□□□ -1.01
SS18-217ENST00000580958 SPTAN1Q13813 2472 aaKnown RBP8.72□□□□□ -1.01
SS18-217ENST00000580958 AKAP6Q13023 2319 aa8.71□□□□□ -1.01
SS18-217ENST00000580958 TRGV10A0A0A0MS01 117 aa8.71□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms