RNA–Protein interactions for RNA: ENST00000577001.1

PRPF8-216, Transcript of pre-mRNA processing factor 8, human

TSL 5

Gene PRPF8, Length 3,274 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PRPF8-216	ENST00000577001		A0A1W2PNU3	283 aa	Predicted RBP	12.59	□□□□□ -0.39
PRPF8-216	ENST00000577001	SMCO3	A2RU48	225 aa		12.59	□□□□□ -0.39
PRPF8-216	ENST00000577001	C5orf52	A6NGY3	159 aa		12.59	□□□□□ -0.39
PRPF8-216	ENST00000577001	ANKRD30BL	A7E2S9	258 aa		12.59	□□□□□ -0.39
PRPF8-216	ENST00000577001	NEURL1	O76050	574 aa		12.59	□□□□□ -0.39
PRPF8-216	ENST00000577001	CRYAA	P02489	173 aa		12.59	□□□□□ -0.39
PRPF8-216	ENST00000577001	FABP4	P15090	132 aa		12.59	□□□□□ -0.39
PRPF8-216	ENST00000577001	FOXO1	Q12778	655 aa		12.59	□□□□□ -0.39
PRPF8-216	ENST00000577001	PRAMEF6	Q5VXH4	476 aa		12.59	□□□□□ -0.39
PRPF8-216	ENST00000577001	OR1L1	Q8NH94	360 aa		12.59	□□□□□ -0.39
PRPF8-216	ENST00000577001	CLDN23	Q96B33	292 aa		12.59	□□□□□ -0.39
PRPF8-216	ENST00000577001	GALNT14	Q96FL9	552 aa		12.59	□□□□□ -0.39
PRPF8-216	ENST00000577001	NUDT16L1	Q9BRJ7	211 aa	Known RBP	12.59	□□□□□ -0.39
PRPF8-216	ENST00000577001	TTTY12	Q9BZ98	90 aa		12.59	□□□□□ -0.39
PRPF8-216	ENST00000577001	OBP2B	Q9NPH6	170 aa		12.59	□□□□□ -0.39
PRPF8-216	ENST00000577001	PSENEN	Q9NZ42	101 aa		12.59	□□□□□ -0.39
PRPF8-216	ENST00000577001	TMED3	Q9Y3Q3	217 aa		12.59	□□□□□ -0.39
PRPF8-216	ENST00000577001	PLXNB1	O43157	2135 aa		12.59	□□□□□ -0.39
PRPF8-216	ENST00000577001	GAPDH	P04406	335 aa	Known RBP	12.59	□□□□□ -0.39
PRPF8-216	ENST00000577001	ARL6IP1	Q15041	203 aa		12.59	□□□□□ -0.39
PRPF8-216	ENST00000577001	SCGB1C1	Q8TD33	95 aa		12.59	□□□□□ -0.39
PRPF8-216	ENST00000577001	MRGPRD	Q8TDS7	321 aa		12.59	□□□□□ -0.39
PRPF8-216	ENST00000577001	DOK5	Q9P104	306 aa		12.59	□□□□□ -0.39
PRPF8-216	ENST00000577001	CXorf65	A6NEN9	183 aa		12.58	□□□□□ -0.4
PRPF8-216	ENST00000577001	RRP8	O43159	456 aa	Known RBP	12.58	□□□□□ -0.4
PRPF8-216	ENST00000577001	APLNR	P35414	380 aa		12.58	□□□□□ -0.4
PRPF8-216	ENST00000577001	OR3A1	P47881	315 aa		12.58	□□□□□ -0.4
PRPF8-216	ENST00000577001	ASPHD1	Q5U4P2	390 aa		12.58	□□□□□ -0.4
PRPF8-216	ENST00000577001	FAM58A	Q8N1B3	248 aa		12.58	□□□□□ -0.4
PRPF8-216	ENST00000577001	C15orf54	Q8N8G6	183 aa		12.58	□□□□□ -0.4
PRPF8-216	ENST00000577001	OR1J1	Q8NGS3	322 aa		12.58	□□□□□ -0.4
PRPF8-216	ENST00000577001	S100PBP	Q96BU1	408 aa		12.58	□□□□□ -0.4
PRPF8-216	ENST00000577001	DLL3	Q9NYJ7	618 aa		12.58	□□□□□ -0.4
PRPF8-216	ENST00000577001	MAP1A	P78559	2803 aa	Predicted RBP	12.58	□□□□□ -0.4
PRPF8-216	ENST00000577001	PGPEP1L	A6NFU8	196 aa		12.58	□□□□□ -0.4
PRPF8-216	ENST00000577001	OPN1MW	P04001	364 aa		12.58	□□□□□ -0.4
PRPF8-216	ENST00000577001	OPN1MW2	P0DN77	364 aa		12.58	□□□□□ -0.4
PRPF8-216	ENST00000577001	OPN1MW3	P0DN78	364 aa		12.58	□□□□□ -0.4
PRPF8-216	ENST00000577001	PAX9	P55771	341 aa		12.58	□□□□□ -0.4
PRPF8-216	ENST00000577001	PCBD1	P61457	104 aa		12.58	□□□□□ -0.4
PRPF8-216	ENST00000577001	RNFT1	Q5M7Z0	435 aa		12.58	□□□□□ -0.4
PRPF8-216	ENST00000577001	GAB2	Q9UQC2	676 aa		12.58	□□□□□ -0.4
PRPF8-216	ENST00000577001	SPTBN1	Q01082	2364 aa	Known RBP	12.58	□□□□□ -0.4
PRPF8-216	ENST00000577001	C9orf172	C9J069	976 aa		12.57	□□□□□ -0.4
PRPF8-216	ENST00000577001	IFNA5	P01569	189 aa		12.57	□□□□□ -0.4
PRPF8-216	ENST00000577001	IGKV1-39	P01597	117 aa		12.57	□□□□□ -0.4
PRPF8-216	ENST00000577001	IGKV1D-39	P04432	117 aa		12.57	□□□□□ -0.4
PRPF8-216	ENST00000577001	PGA5	P0DJD9	388 aa		12.57	□□□□□ -0.4
PRPF8-216	ENST00000577001	RAB2A	P61019	212 aa		12.57	□□□□□ -0.4
PRPF8-216	ENST00000577001	CLN3	Q13286	438 aa		12.57	□□□□□ -0.4
PRPF8-216	ENST00000577001	IL13RA2	Q14627	380 aa		12.57	□□□□□ -0.4
PRPF8-216	ENST00000577001	ICAM4	Q14773	271 aa		12.57	□□□□□ -0.4
PRPF8-216	ENST00000577001	GCSAML	Q5JQS6	135 aa		12.57	□□□□□ -0.4
PRPF8-216	ENST00000577001	ZNF787	Q6DD87	383 aa		12.57	□□□□□ -0.4
PRPF8-216	ENST00000577001	WDR5B	Q86VZ2	330 aa		12.57	□□□□□ -0.4
PRPF8-216	ENST00000577001	WDR54	Q9H977	334 aa		12.57	□□□□□ -0.4
PRPF8-216	ENST00000577001	STX12	Q86Y82	276 aa		12.57	□□□□□ -0.4
PRPF8-216	ENST00000577001	MRPL30	Q8TCC3	161 aa	Known RBP	12.57	□□□□□ -0.4
PRPF8-216	ENST00000577001	ADGRG7	Q96K78	797 aa		12.57	□□□□□ -0.4
PRPF8-216	ENST00000577001	METRN	Q9UJH8	293 aa		12.57	□□□□□ -0.4
PRPF8-216	ENST00000577001	SRP19	P09132	144 aa	Known RBP	12.57	□□□□□ -0.4
PRPF8-216	ENST00000577001	EDARADD	Q8WWZ3	215 aa		12.57	□□□□□ -0.4
PRPF8-216	ENST00000577001	PFDN5	Q99471	154 aa		12.57	□□□□□ -0.4
PRPF8-216	ENST00000577001	NIPSNAP3B	Q9BS92	247 aa		12.57	□□□□□ -0.4
PRPF8-216	ENST00000577001	REPIN1	Q9BWE0	567 aa	Known RBP	12.57	□□□□□ -0.4
PRPF8-216	ENST00000577001	HINT2	Q9BX68	163 aa		12.57	□□□□□ -0.4
PRPF8-216	ENST00000577001	F2R	P25116	425 aa		12.56	□□□□□ -0.4
PRPF8-216	ENST00000577001	GABRA2	P47869	451 aa		12.56	□□□□□ -0.4
PRPF8-216	ENST00000577001	EIF3I	Q13347	325 aa	Known RBP	12.56	□□□□□ -0.4
PRPF8-216	ENST00000577001	ZNF266	Q14584	549 aa		12.56	□□□□□ -0.4
PRPF8-216	ENST00000577001	OR8B8	Q15620	311 aa		12.56	□□□□□ -0.4
PRPF8-216	ENST00000577001	FAM201A	Q5SY85	155 aa		12.56	□□□□□ -0.4
PRPF8-216	ENST00000577001	TMEM211	Q6ICI0	200 aa		12.56	□□□□□ -0.4
PRPF8-216	ENST00000577001	UNQ6494/PRO21346	Q6UXR6	183 aa		12.56	□□□□□ -0.4
PRPF8-216	ENST00000577001	ZNF383	Q8NA42	475 aa		12.56	□□□□□ -0.4
PRPF8-216	ENST00000577001	APC2	O95996	2303 aa		12.56	□□□□□ -0.4
PRPF8-216	ENST00000577001	MEOX1	P50221	254 aa		12.56	□□□□□ -0.4
PRPF8-216	ENST00000577001	LHX2	P50458	406 aa		12.56	□□□□□ -0.4
PRPF8-216	ENST00000577001	ZFP36L1	Q07352	338 aa	Known RBP	12.56	□□□□□ -0.4
PRPF8-216	ENST00000577001	OR5P3	Q8WZ94	311 aa		12.56	□□□□□ -0.4
PRPF8-216	ENST00000577001	LYRM2	Q9NU23	88 aa	Predicted RBP	12.56	□□□□□ -0.4
PRPF8-216	ENST00000577001	BOK	Q9UMX3	212 aa	Predicted RBP	12.56	□□□□□ -0.4
PRPF8-216	ENST00000577001	PQLC2L	A1A4F0	135 aa		12.56	□□□□□ -0.4
PRPF8-216	ENST00000577001	VDAC1	P21796	283 aa		12.56	□□□□□ -0.4
PRPF8-216	ENST00000577001	CCL11	P51671	97 aa		12.56	□□□□□ -0.4
PRPF8-216	ENST00000577001	FGF12	P61328	243 aa		12.56	□□□□□ -0.4
PRPF8-216	ENST00000577001	TMEM42	Q69YG0	159 aa		12.56	□□□□□ -0.4
PRPF8-216	ENST00000577001	PCSK4	Q6UW60	755 aa		12.56	□□□□□ -0.4
PRPF8-216	ENST00000577001	OR4C12	Q96R67	309 aa		12.56	□□□□□ -0.4
PRPF8-216	ENST00000577001	ELOVL1	Q9BW60	279 aa		12.56	□□□□□ -0.4
PRPF8-216	ENST00000577001	PCED1A	Q9H1Q7	454 aa		12.56	□□□□□ -0.4
PRPF8-216	ENST00000577001	OPA3	Q9H6K4	179 aa		12.56	□□□□□ -0.4
PRPF8-216	ENST00000577001	DUSP13	Q9UII6	198 aa		12.56	□□□□□ -0.4
PRPF8-216	ENST00000577001	YLPM1	P49750	1951 aa	Known RBP	12.55	□□□□□ -0.4
PRPF8-216	ENST00000577001	AKAP13	Q12802	2813 aa		12.55	□□□□□ -0.4
PRPF8-216	ENST00000577001		A0A1B0GUS0	222 aa		12.55	□□□□□ -0.4
PRPF8-216	ENST00000577001	AP4M1	O00189	453 aa		12.55	□□□□□ -0.4
PRPF8-216	ENST00000577001	OR2H2	O95918	312 aa		12.55	□□□□□ -0.4
PRPF8-216	ENST00000577001	CD200	P41217	278 aa		12.55	□□□□□ -0.4
PRPF8-216	ENST00000577001	GFRA1	P56159	465 aa		12.55	□□□□□ -0.4

Retrieved 100 of 20,778 RNA–protein pairs in 45 ms