RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 RRHO14718 337 aa11.79□□□□□ -0.52
VPS53-218ENST00000575207 DEFB4AO15263 64 aa11.79□□□□□ -0.52
VPS53-218ENST00000575207 APOL3O95236 402 aa11.79□□□□□ -0.52
VPS53-218ENST00000575207 SOX14O95416 240 aa11.79□□□□□ -0.52
VPS53-218ENST00000575207 ZNF134P52741 427 aa11.79□□□□□ -0.52
VPS53-218ENST00000575207 DEFA5Q01523 94 aa11.79□□□□□ -0.52
VPS53-218ENST00000575207 CT45A1Q5HYN5 189 aa11.79□□□□□ -0.52
VPS53-218ENST00000575207 ZNF562Q6V9R5 426 aa11.79□□□□□ -0.52
VPS53-218ENST00000575207 Q6ZTC4 211 aa11.79□□□□□ -0.52
VPS53-218ENST00000575207 OR9Q2Q8NGE9 314 aa11.79□□□□□ -0.52
VPS53-218ENST00000575207 CT45A3Q8NHU0 189 aa11.79□□□□□ -0.52
VPS53-218ENST00000575207 BTBD10Q9BSF8 475 aa11.79□□□□□ -0.52
VPS53-218ENST00000575207 TTTY10Q9BZA0 68 aa11.79□□□□□ -0.52
VPS53-218ENST00000575207 YIPF3Q9GZM5 350 aa11.79□□□□□ -0.52
VPS53-218ENST00000575207 TRAV24A0A0B4J272 114 aa11.78□□□□□ -0.52
VPS53-218ENST00000575207 SCAF4O95104 1147 aaKnown RBP11.78□□□□□ -0.52
VPS53-218ENST00000575207 NCK1P16333 377 aa11.78□□□□□ -0.52
VPS53-218ENST00000575207 HLA-DMBP28068 263 aa11.78□□□□□ -0.52
VPS53-218ENST00000575207 RRM2P31350 389 aa11.78□□□□□ -0.52
VPS53-218ENST00000575207 OR5T1Q8NG75 326 aa11.78□□□□□ -0.52
VPS53-218ENST00000575207 STON2Q8WXE9 905 aa11.78□□□□□ -0.52
VPS53-218ENST00000575207 RFT1Q96AA3 541 aa11.78□□□□□ -0.52
VPS53-218ENST00000575207 USMG5Q96IX5 58 aa11.78□□□□□ -0.52
VPS53-218ENST00000575207 NDUFAF3Q9BU61 184 aa11.78□□□□□ -0.52
VPS53-218ENST00000575207 MRPL20Q9BYC9 149 aaKnown RBP11.78□□□□□ -0.52
VPS53-218ENST00000575207 R4GMQ9 66 aa11.78□□□□□ -0.52
VPS53-218ENST00000575207 PRODHO43272 600 aa11.77□□□□□ -0.53
VPS53-218ENST00000575207 SYT7O43581 403 aa11.77□□□□□ -0.53
VPS53-218ENST00000575207 SCTP09683 121 aa11.77□□□□□ -0.53
VPS53-218ENST00000575207 RPL35AP18077 110 aaKnown RBP11.77□□□□□ -0.53
VPS53-218ENST00000575207 CBLN1P23435 193 aa11.77□□□□□ -0.53
VPS53-218ENST00000575207 KCNJ3P48549 501 aa11.77□□□□□ -0.53
VPS53-218ENST00000575207 ODF4Q2M2E3 257 aa11.77□□□□□ -0.53
VPS53-218ENST00000575207 ASB17Q8WXJ9 295 aa11.77□□□□□ -0.53
VPS53-218ENST00000575207 SNX5Q9Y5X3 404 aa11.77□□□□□ -0.53
VPS53-218ENST00000575207 IGKV1-9A0A0C4DH69 117 aa11.76□□□□□ -0.53
VPS53-218ENST00000575207 KRTAP29-1A8MX34 341 aaPredicted RBP11.76□□□□□ -0.53
VPS53-218ENST00000575207 GASTP01350 101 aa11.76□□□□□ -0.53
VPS53-218ENST00000575207 PRKACBP22694 351 aa11.76□□□□□ -0.53
VPS53-218ENST00000575207 LINC00596Q86U02 117 aa11.76□□□□□ -0.53
VPS53-218ENST00000575207 CNIH3Q8TBE1 160 aa11.76□□□□□ -0.53
VPS53-218ENST00000575207 PP6455Q8WZ26 134 aa11.76□□□□□ -0.53
VPS53-218ENST00000575207 ANP32BQ92688 251 aaKnown RBP11.76□□□□□ -0.53
VPS53-218ENST00000575207 CLCC1Q96S66 551 aa11.76□□□□□ -0.53
VPS53-218ENST00000575207 SAMD4AQ9UPU9 718 aaKnown RBP11.76□□□□□ -0.53
VPS53-218ENST00000575207 IFNA21P01568 189 aa11.75□□□□□ -0.53
VPS53-218ENST00000575207 IFNA17P01571 189 aa11.75□□□□□ -0.53
VPS53-218ENST00000575207 ADMP35318 185 aa11.75□□□□□ -0.53
VPS53-218ENST00000575207 XGP55808 180 aa11.75□□□□□ -0.53
VPS53-218ENST00000575207 RPS7P62081 194 aaKnown RBP11.75□□□□□ -0.53
VPS53-218ENST00000575207 STEAP3Q658P3 488 aa11.75□□□□□ -0.53
VPS53-218ENST00000575207 PLEKHG7Q6ZR37 379 aa11.75□□□□□ -0.53
VPS53-218ENST00000575207 KCTD20Q7Z5Y7 419 aa11.75□□□□□ -0.53
VPS53-218ENST00000575207 ARPINQ7Z6K5 226 aa11.75□□□□□ -0.53
VPS53-218ENST00000575207 OR5D18Q8NGL1 313 aa11.75□□□□□ -0.53
VPS53-218ENST00000575207 OR1L6Q8NGR2 347 aa11.75□□□□□ -0.53
VPS53-218ENST00000575207 OR4A5Q8NH83 315 aa11.75□□□□□ -0.53
VPS53-218ENST00000575207 GRPEL2Q8TAA5 225 aa11.75□□□□□ -0.53
VPS53-218ENST00000575207 CACNG8Q8WXS5 425 aa11.75□□□□□ -0.53
VPS53-218ENST00000575207 THRSPQ92748 146 aa11.75□□□□□ -0.53
VPS53-218ENST00000575207 GALNT14Q96FL9 552 aa11.75□□□□□ -0.53
VPS53-218ENST00000575207 NEK6Q9HC98 313 aa11.75□□□□□ -0.53
VPS53-218ENST00000575207 GNG12Q9UBI6 72 aa11.75□□□□□ -0.53
VPS53-218ENST00000575207 MLXQ9UH92 298 aa11.75□□□□□ -0.53
VPS53-218ENST00000575207 TRAV25A0A0B4J276 109 aa11.74□□□□□ -0.53
VPS53-218ENST00000575207 ORC5O43913 435 aa11.74□□□□□ -0.53
VPS53-218ENST00000575207 VSNL1P62760 191 aa11.74□□□□□ -0.53
VPS53-218ENST00000575207 SLC35D3Q5M8T2 416 aa11.74□□□□□ -0.53
VPS53-218ENST00000575207 SAXO1Q8IYX7 474 aa11.74□□□□□ -0.53
VPS53-218ENST00000575207 OR2C3Q8N628 320 aa11.74□□□□□ -0.53
VPS53-218ENST00000575207 IQCF1Q8N6M8 205 aa11.74□□□□□ -0.53
VPS53-218ENST00000575207 OR10V1Q8NGI7 309 aa11.74□□□□□ -0.53
VPS53-218ENST00000575207 OR13C5Q8NGS8 318 aa11.74□□□□□ -0.53
VPS53-218ENST00000575207 C10orf35Q96D05 121 aa11.74□□□□□ -0.53
VPS53-218ENST00000575207 NR1H4Q96RI1 486 aaPredicted RBP11.74□□□□□ -0.53
VPS53-218ENST00000575207 CSTL1Q9H114 145 aa11.74□□□□□ -0.53
VPS53-218ENST00000575207 TMEM14AQ9Y6G1 99 aa11.74□□□□□ -0.53
VPS53-218ENST00000575207 V9GYQ6 96 aa11.74□□□□□ -0.53
VPS53-218ENST00000575207 CA2P00918 260 aa11.73□□□□□ -0.53
VPS53-218ENST00000575207 MRPL3P09001 348 aaKnown RBP11.73□□□□□ -0.53
VPS53-218ENST00000575207 KRTAP10-2P60368 255 aa11.73□□□□□ -0.53
VPS53-218ENST00000575207 MED22Q15528 200 aa11.73□□□□□ -0.53
VPS53-218ENST00000575207 UBE2DNLQ8IWF7 75 aa11.73□□□□□ -0.53
VPS53-218ENST00000575207 SPSB1Q96BD6 273 aa11.73□□□□□ -0.53
VPS53-218ENST00000575207 OPALINQ96PE5 141 aa11.73□□□□□ -0.53
VPS53-218ENST00000575207 APOL4Q9BPW4 351 aa11.73□□□□□ -0.53
VPS53-218ENST00000575207 MDFICQ9P1T7 246 aa11.73□□□□□ -0.53
VPS53-218ENST00000575207 UBQLN2Q9UHD9 624 aa11.73□□□□□ -0.53
VPS53-218ENST00000575207 MPTX1A8MV57 137 aa11.72□□□□□ -0.53
VPS53-218ENST00000575207 NME4O00746 187 aa11.72□□□□□ -0.53
VPS53-218ENST00000575207 MAGEB4O15481 346 aaPredicted RBP11.72□□□□□ -0.53
VPS53-218ENST00000575207 RBMXL2O75526 392 aaKnown RBP11.72□□□□□ -0.53
VPS53-218ENST00000575207 SEMG1P04279 462 aa11.72□□□□□ -0.53
VPS53-218ENST00000575207 ATF1P18846 271 aa11.72□□□□□ -0.53
VPS53-218ENST00000575207 MAGEA2P43356 314 aa11.72□□□□□ -0.53
VPS53-218ENST00000575207 MICAQ29983 383 aa11.72□□□□□ -0.53
VPS53-218ENST00000575207 METTL21CQ5VZV1 264 aa11.72□□□□□ -0.53
VPS53-218ENST00000575207 SLC38A6Q8IZM9 456 aa11.72□□□□□ -0.53
VPS53-218ENST00000575207 AQP11Q8NBQ7 271 aa11.72□□□□□ -0.53
VPS53-218ENST00000575207 CCDC54Q8NEL0 328 aa11.72□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms