RNA–Protein interactions for RNA: ENST00000574867.5

NUP88-210, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 2,081 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-210ENST00000574867 ANXA10Q9UJ72 324 aa13.94□□□□□ -0.18
NUP88-210ENST00000574867 V9GYH0 126 aa13.94□□□□□ -0.18
NUP88-210ENST00000574867 ZBTB25P24278 435 aa13.93□□□□□ -0.18
NUP88-210ENST00000574867 ACTBP60709 375 aa13.93□□□□□ -0.18
NUP88-210ENST00000574867 ACTG1P63261 375 aa13.93□□□□□ -0.18
NUP88-210ENST00000574867 PRB3Q04118 309 aaPredicted RBP13.93□□□□□ -0.18
NUP88-210ENST00000574867 CHRFAM7AQ494W8 412 aa13.93□□□□□ -0.18
NUP88-210ENST00000574867 MIDNQ504T8 468 aa13.93□□□□□ -0.18
NUP88-210ENST00000574867 ZNF626Q68DY1 528 aa13.93□□□□□ -0.18
NUP88-210ENST00000574867 PDZD9Q8IXQ8 264 aa13.93□□□□□ -0.18
NUP88-210ENST00000574867 GVQW1Q8N7I0 195 aa13.93□□□□□ -0.18
NUP88-210ENST00000574867 C8orf31Q8N9H6 132 aa13.93□□□□□ -0.18
NUP88-210ENST00000574867 OR9G1Q8NH87 305 aa13.93□□□□□ -0.18
NUP88-210ENST00000574867 ZNF596Q8TC21 504 aa13.93□□□□□ -0.18
NUP88-210ENST00000574867 FCAMRQ8WWV6 532 aa13.93□□□□□ -0.18
NUP88-210ENST00000574867 IGHV3-43A0A0B4J1X8 118 aa13.92□□□□□ -0.18
NUP88-210ENST00000574867 MEIS3P1A6NDR6 274 aa13.92□□□□□ -0.18
NUP88-210ENST00000574867 ODF3BA8MYP8 253 aa13.92□□□□□ -0.18
NUP88-210ENST00000574867 CTXN2P0C2S0 81 aa13.92□□□□□ -0.18
NUP88-210ENST00000574867 GSTT2P0CG29 244 aa13.92□□□□□ -0.18
NUP88-210ENST00000574867 GSTT2BP0CG30 244 aa13.92□□□□□ -0.18
NUP88-210ENST00000574867 IGHV3-43DP0DP04 118 aa13.92□□□□□ -0.18
NUP88-210ENST00000574867 RCVRNP35243 200 aa13.92□□□□□ -0.18
NUP88-210ENST00000574867 LY6G6FQ5SQ64 297 aa13.92□□□□□ -0.18
NUP88-210ENST00000574867 C9orf139Q6ZV77 190 aa13.92□□□□□ -0.18
NUP88-210ENST00000574867 BEND2Q8NDZ0 799 aa13.92□□□□□ -0.18
NUP88-210ENST00000574867 SMIM4Q8WVI0 70 aa13.92□□□□□ -0.18
NUP88-210ENST00000574867 IGHV3OR16-10A0A075B7F0 116 aa13.92□□□□□ -0.18
NUP88-210ENST00000574867 IGKV1D-8A0A087WSZ0 117 aa13.92□□□□□ -0.18
NUP88-210ENST00000574867 FAM172BPA6NC97 362 aa13.92□□□□□ -0.18
NUP88-210ENST00000574867 NPFFO15130 113 aa13.92□□□□□ -0.18
NUP88-210ENST00000574867 HSPA12AO43301 675 aa13.92□□□□□ -0.18
NUP88-210ENST00000574867 YPEL1O60688 119 aa13.92□□□□□ -0.18
NUP88-210ENST00000574867 SRD5A1P18405 259 aa13.92□□□□□ -0.18
NUP88-210ENST00000574867 NAT1P18440 290 aa13.92□□□□□ -0.18
NUP88-210ENST00000574867 PRRX1P54821 245 aa13.92□□□□□ -0.18
NUP88-210ENST00000574867 ARPC4P59998 168 aa13.92□□□□□ -0.18
NUP88-210ENST00000574867 SSBP1Q04837 148 aaKnown RBP13.92□□□□□ -0.18
NUP88-210ENST00000574867 HERPUD1Q15011 391 aa13.92□□□□□ -0.18
NUP88-210ENST00000574867 SNAPC3Q92966 411 aa13.92□□□□□ -0.18
NUP88-210ENST00000574867 YPEL2Q96QA6 119 aa13.92□□□□□ -0.18
NUP88-210ENST00000574867 SLC23A1Q9UHI7 598 aa13.92□□□□□ -0.18
NUP88-210ENST00000574867 IGKV1-6A0A0C4DH72 117 aa13.91□□□□□ -0.18
NUP88-210ENST00000574867 TOR1AO14656 332 aa13.91□□□□□ -0.18
NUP88-210ENST00000574867 ARG1P05089 322 aa13.91□□□□□ -0.18
NUP88-210ENST00000574867 MORN2Q502X0 79 aa13.91□□□□□ -0.18
NUP88-210ENST00000574867 C5orf24Q7Z6I8 188 aa13.91□□□□□ -0.18
NUP88-210ENST00000574867 OR52L2PQ8NGH6 319 aa13.91□□□□□ -0.18
NUP88-210ENST00000574867 OR10V1Q8NGI7 309 aa13.91□□□□□ -0.18
NUP88-210ENST00000574867 OR52I2Q8NH67 350 aa13.91□□□□□ -0.18
NUP88-210ENST00000574867 OR10J5Q8NHC4 309 aa13.91□□□□□ -0.18
NUP88-210ENST00000574867 MS4A7Q9GZW8 240 aaPredicted RBP13.91□□□□□ -0.18
NUP88-210ENST00000574867 PSG11Q9UQ72 335 aa13.91□□□□□ -0.18
NUP88-210ENST00000574867 TBL2Q9Y4P3 447 aaKnown RBP13.91□□□□□ -0.18
NUP88-210ENST00000574867 NAV3Q8IVL0 2385 aa13.91□□□□□ -0.18
NUP88-210ENST00000574867 TRBV6-7A0A0A0MS04 114 aa13.91□□□□□ -0.18
NUP88-210ENST00000574867 J3QR06 171 aa13.91□□□□□ -0.18
NUP88-210ENST00000574867 BET1O15155 118 aa13.91□□□□□ -0.18
NUP88-210ENST00000574867 RBBP9O75884 186 aa13.91□□□□□ -0.18
NUP88-210ENST00000574867 IGLV1-47P01700 117 aa13.91□□□□□ -0.18
NUP88-210ENST00000574867 EPHA1P21709 976 aa13.91□□□□□ -0.18
NUP88-210ENST00000574867 LGALS4P56470 323 aa13.91□□□□□ -0.18
NUP88-210ENST00000574867 TAS2R46P59540 309 aa13.91□□□□□ -0.18
NUP88-210ENST00000574867 GNMTQ14749 295 aa13.91□□□□□ -0.18
NUP88-210ENST00000574867 IGSF11Q5DX21 431 aa13.91□□□□□ -0.18
NUP88-210ENST00000574867 RUSC1-AS1Q66K80 236 aa13.91□□□□□ -0.18
NUP88-210ENST00000574867 BRD3OSQ6XYD6 125 aa13.91□□□□□ -0.18
NUP88-210ENST00000574867 LEAP2Q969E1 77 aa13.91□□□□□ -0.18
NUP88-210ENST00000574867 CREB3L1Q96BA8 519 aa13.91□□□□□ -0.18
NUP88-210ENST00000574867 MTFP1Q9UDX5 166 aa13.91□□□□□ -0.18
NUP88-210ENST00000574867 GSTZ1O43708 216 aaPredicted RBP13.9□□□□□ -0.18
NUP88-210ENST00000574867 CRLF1O75462 422 aa13.9□□□□□ -0.18
NUP88-210ENST00000574867 SAA4P35542 130 aa13.9□□□□□ -0.18
NUP88-210ENST00000574867 PPP1CCP36873 323 aaKnown RBP13.9□□□□□ -0.18
NUP88-210ENST00000574867 GNG10P50151 68 aa13.9□□□□□ -0.18
NUP88-210ENST00000574867 DGCR2P98153 550 aa13.9□□□□□ -0.18
NUP88-210ENST00000574867 HLA-DRB5Q30154 266 aa13.9□□□□□ -0.18
NUP88-210ENST00000574867 RNASE12Q5GAN4 147 aaKnown RBP13.9□□□□□ -0.18
NUP88-210ENST00000574867 PIP4P2Q8N4L2 257 aa13.9□□□□□ -0.18
NUP88-210ENST00000574867 LINC00311Q8N616 119 aa13.9□□□□□ -0.18
NUP88-210ENST00000574867 ZNF439Q8NDP4 499 aa13.9□□□□□ -0.18
NUP88-210ENST00000574867 OR5AP2Q8NGF4 316 aa13.9□□□□□ -0.18
NUP88-210ENST00000574867 EDARADDQ8WWZ3 215 aa13.9□□□□□ -0.18
NUP88-210ENST00000574867 GINS4Q9BRT9 223 aa13.9□□□□□ -0.18
NUP88-210ENST00000574867 TOLLIPQ9H0E2 274 aa13.9□□□□□ -0.18
NUP88-210ENST00000574867 MMP28Q9H239 520 aa13.9□□□□□ -0.18
NUP88-210ENST00000574867 OR1A1Q9P1Q5 309 aa13.9□□□□□ -0.18
NUP88-210ENST00000574867 AMMECR1Q9Y4X0 333 aaPredicted RBP13.9□□□□□ -0.18
NUP88-210ENST00000574867 ZNF45Q02386 682 aa13.89□□□□□ -0.19
NUP88-210ENST00000574867 ZNF79Q15937 498 aa13.89□□□□□ -0.19
NUP88-210ENST00000574867 UTF1Q5T230 341 aa13.89□□□□□ -0.19
NUP88-210ENST00000574867 MINOS1Q5TGZ0 78 aa13.89□□□□□ -0.19
NUP88-210ENST00000574867 SLC25A48Q6ZT89 311 aaKnown RBP13.89□□□□□ -0.19
NUP88-210ENST00000574867 OR2AK2Q8NG84 335 aa13.89□□□□□ -0.19
NUP88-210ENST00000574867 OR4P4Q8NGL7 312 aa13.89□□□□□ -0.19
NUP88-210ENST00000574867 NECAP2Q9NVZ3 263 aa13.89□□□□□ -0.19
NUP88-210ENST00000574867 ZNF69Q9UC07 566 aa13.89□□□□□ -0.19
NUP88-210ENST00000574867 ZNF107Q9UII5 783 aaPredicted RBP13.89□□□□□ -0.19
NUP88-210ENST00000574867 MINOS1-NBL1R4GNA1 71 aa13.89□□□□□ -0.19
NUP88-210ENST00000574867 MTORP42345 2549 aa13.89□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms