RNA–Protein interactions for RNA: ENST00000572334.6

VPS53-213, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-213ENST00000572334 IGSF11Q5DX21 431 aa5.36□□□□□ -1.55
VPS53-213ENST00000572334 PYHIN1Q6K0P9 492 aa5.36□□□□□ -1.55
VPS53-213ENST00000572334 Q8N402 240 aa5.36□□□□□ -1.55
VPS53-213ENST00000572334 ZNF676Q8N7Q3 588 aa5.36□□□□□ -1.55
VPS53-213ENST00000572334 UXS1Q8NBZ7 420 aa5.36□□□□□ -1.55
VPS53-213ENST00000572334 OR5AU1Q8NGC0 362 aa5.36□□□□□ -1.55
VPS53-213ENST00000572334 OR10AC1Q8NH08 325 aa5.36□□□□□ -1.55
VPS53-213ENST00000572334 SCARB1Q8WTV0 552 aa5.36□□□□□ -1.55
VPS53-213ENST00000572334 C15orf40Q8WUR7 153 aa5.36□□□□□ -1.55
VPS53-213ENST00000572334 EMG1Q92979 244 aaKnown RBP5.36□□□□□ -1.55
VPS53-213ENST00000572334 GINS4Q9BRT9 223 aa5.36□□□□□ -1.55
VPS53-213ENST00000572334 CLEC7AQ9BXN2 247 aa5.36□□□□□ -1.55
VPS53-213ENST00000572334 TEX12Q9BXU0 123 aa5.36□□□□□ -1.55
VPS53-213ENST00000572334 SAV1Q9H4B6 383 aaPredicted RBP5.36□□□□□ -1.55
VPS53-213ENST00000572334 GPN1Q9HCN4 374 aaPredicted RBP5.36□□□□□ -1.55
VPS53-213ENST00000572334 SDHAF2Q9NX18 166 aa5.36□□□□□ -1.55
VPS53-213ENST00000572334 PITPNC1Q9UKF7 332 aa5.36□□□□□ -1.55
VPS53-213ENST00000572334 V9GYH0 126 aa5.36□□□□□ -1.55
VPS53-213ENST00000572334 A0A0B4J203 849 aa5.35□□□□□ -1.55
VPS53-213ENST00000572334 A0A1W2PRX2 142 aa5.35□□□□□ -1.55
VPS53-213ENST00000572334 hADV38S2A0JD32 116 aa5.35□□□□□ -1.55
VPS53-213ENST00000572334 C7orf66A4D0T2 115 aa5.35□□□□□ -1.55
VPS53-213ENST00000572334 NAP1L6A6NFF2 107 aa5.35□□□□□ -1.55
VPS53-213ENST00000572334 F2RL2O00254 374 aa5.35□□□□□ -1.55
VPS53-213ENST00000572334 MGST3O14880 152 aa5.35□□□□□ -1.55
VPS53-213ENST00000572334 FABP7O15540 132 aa5.35□□□□□ -1.55
VPS53-213ENST00000572334 RGS11O94810 467 aa5.35□□□□□ -1.55
VPS53-213ENST00000572334 FABP1P07148 127 aa5.35□□□□□ -1.55
VPS53-213ENST00000572334 CGB3P0DN86 165 aa5.35□□□□□ -1.55
VPS53-213ENST00000572334 CGB7P0DN87 165 aa5.35□□□□□ -1.55
VPS53-213ENST00000572334 ATF1P18846 271 aa5.35□□□□□ -1.55
VPS53-213ENST00000572334 CD34P28906 385 aa5.35□□□□□ -1.55
VPS53-213ENST00000572334 MNDAP41218 407 aa5.35□□□□□ -1.55
VPS53-213ENST00000572334 VDAC2P45880 294 aaPredicted RBP5.35□□□□□ -1.55
VPS53-213ENST00000572334 GLIPR1P48060 266 aa5.35□□□□□ -1.55
VPS53-213ENST00000572334 RAB5BP61020 215 aa5.35□□□□□ -1.55
VPS53-213ENST00000572334 PDZK1IP1Q13113 114 aa5.35□□□□□ -1.55
VPS53-213ENST00000572334 EXOSC2Q13868 293 aaKnown RBP5.35□□□□□ -1.55
VPS53-213ENST00000572334 IRF3Q14653 427 aa5.35□□□□□ -1.55
VPS53-213ENST00000572334 TP53I3Q53FA7 332 aa5.35□□□□□ -1.55
VPS53-213ENST00000572334 PRAMEF5Q5TYX0 476 aa5.35□□□□□ -1.55
VPS53-213ENST00000572334 ZNF57Q68EA5 555 aaPredicted RBP5.35□□□□□ -1.55
VPS53-213ENST00000572334 Q6P435 159 aa5.35□□□□□ -1.55
VPS53-213ENST00000572334 FDX2Q6P4F2 183 aa5.35□□□□□ -1.55
VPS53-213ENST00000572334 ETV3LQ6ZN32 361 aa5.35□□□□□ -1.55
VPS53-213ENST00000572334 UTS2BQ765I0 119 aa5.35□□□□□ -1.55
VPS53-213ENST00000572334 GID4Q8IVV7 300 aa5.35□□□□□ -1.55
VPS53-213ENST00000572334 FAM58AQ8N1B3 248 aa5.35□□□□□ -1.55
VPS53-213ENST00000572334 SVBPQ8N300 66 aa5.35□□□□□ -1.55
VPS53-213ENST00000572334 DTX3Q8N9I9 347 aa5.35□□□□□ -1.55
VPS53-213ENST00000572334 DNAAF1Q8NEP3 725 aa5.35□□□□□ -1.55
VPS53-213ENST00000572334 OR10H4Q8NGA5 316 aa5.35□□□□□ -1.55
VPS53-213ENST00000572334 OR4F17Q8NGA8 305 aa5.35□□□□□ -1.55
VPS53-213ENST00000572334 OR51A4Q8NGJ6 313 aa5.35□□□□□ -1.55
VPS53-213ENST00000572334 OR6M1Q8NGM8 313 aa5.35□□□□□ -1.55
VPS53-213ENST00000572334 OR2G2Q8NGZ5 317 aa5.35□□□□□ -1.55
VPS53-213ENST00000572334 CORO2AQ92828 525 aa5.35□□□□□ -1.55
VPS53-213ENST00000572334 C10orf35Q96D05 121 aa5.35□□□□□ -1.55
VPS53-213ENST00000572334 BORCS8Q96FH0 119 aa5.35□□□□□ -1.55
VPS53-213ENST00000572334 COQ2Q96H96 371 aa5.35□□□□□ -1.55
VPS53-213ENST00000572334 OR4F4Q96R69 305 aa5.35□□□□□ -1.55
VPS53-213ENST00000572334 C11orf54Q9H0W9 315 aaPredicted RBP5.35□□□□□ -1.55
VPS53-213ENST00000572334 SLC25A32Q9H2D1 315 aa5.35□□□□□ -1.55
VPS53-213ENST00000572334 ZNF286AQ9HBT8 521 aa5.35□□□□□ -1.55
VPS53-213ENST00000572334 INPP5EQ9NRR6 644 aa5.35□□□□□ -1.55
VPS53-213ENST00000572334 FRRS1LQ9P0K9 344 aa5.35□□□□□ -1.55
VPS53-213ENST00000572334 EXTL2Q9UBQ6 330 aa5.35□□□□□ -1.55
VPS53-213ENST00000572334 SPATA2Q9UM82 520 aa5.35□□□□□ -1.55
VPS53-213ENST00000572334 SLC7A11Q9UPY5 501 aa5.35□□□□□ -1.55
VPS53-213ENST00000572334 UBE2J1Q9Y385 318 aaPredicted RBP5.35□□□□□ -1.55
VPS53-213ENST00000572334 CBY1Q9Y3M2 126 aa5.35□□□□□ -1.55
VPS53-213ENST00000572334 SORL1Q92673 2214 aa5.35□□□□□ -1.55
VPS53-213ENST00000572334 HUWE1Q7Z6Z7 4374 aaKnown RBP5.34□□□□□ -1.55
VPS53-213ENST00000572334 A0A087X0M5 115 aa5.34□□□□□ -1.55
VPS53-213ENST00000572334 A0A1B0GX30 115 aa5.34□□□□□ -1.55
VPS53-213ENST00000572334 WI2-2373I1.2A0A1W2PRP0 233 aa5.34□□□□□ -1.55
VPS53-213ENST00000572334 FAM90A18PA6NE21 464 aa5.34□□□□□ -1.55
VPS53-213ENST00000572334 FAM90A16PA6NEW6 464 aa5.34□□□□□ -1.55
VPS53-213ENST00000572334 MFSD2BA6NFX1 497 aa5.34□□□□□ -1.55
VPS53-213ENST00000572334 FAM90A20PA6NIJ5 464 aa5.34□□□□□ -1.55
VPS53-213ENST00000572334 FAM90A9PA6NNJ1 464 aa5.34□□□□□ -1.55
VPS53-213ENST00000572334 FAM90A12PA8MX19 464 aa5.34□□□□□ -1.55
VPS53-213ENST00000572334 FAM90A5PA8MXJ8 464 aa5.34□□□□□ -1.55
VPS53-213ENST00000572334 H3BUI4 141 aa5.34□□□□□ -1.55
VPS53-213ENST00000572334 L7N2F9 121 aa5.34□□□□□ -1.55
VPS53-213ENST00000572334 SIRPB1O00241 398 aa5.34□□□□□ -1.55
VPS53-213ENST00000572334 GATBO75879 557 aaKnown RBP5.34□□□□□ -1.55
VPS53-213ENST00000572334 KDM4BO94953 1096 aa5.34□□□□□ -1.55
VPS53-213ENST00000572334 MPIG6BO95866 241 aa5.34□□□□□ -1.55
VPS53-213ENST00000572334 OR2H2O95918 312 aa5.34□□□□□ -1.55
VPS53-213ENST00000572334 ISG15P05161 165 aa5.34□□□□□ -1.55
VPS53-213ENST00000572334 LPLP06858 475 aa5.34□□□□□ -1.55
VPS53-213ENST00000572334 FAM90A15PP0C7V4 464 aa5.34□□□□□ -1.55
VPS53-213ENST00000572334 FAM90A13PP0C7W8 464 aa5.34□□□□□ -1.55
VPS53-213ENST00000572334 FAM90A14PP0C7W9 464 aa5.34□□□□□ -1.55
VPS53-213ENST00000572334 FAM90A24PP0C7X0 464 aa5.34□□□□□ -1.55
VPS53-213ENST00000572334 UBCP0CG48 685 aaKnown RBP5.34□□□□□ -1.55
VPS53-213ENST00000572334 RAB4AP20338 218 aa5.34□□□□□ -1.55
VPS53-213ENST00000572334 GABRR1P24046 479 aa5.34□□□□□ -1.55
VPS53-213ENST00000572334 CDK2P24941 298 aa5.34□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms