RNA–Protein interactions for RNA: ENST00000571456.1

VPS53-210, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-210ENST00000571456 SAA4P35542 130 aa16.73■□□□□ 0.27
VPS53-210ENST00000571456 CEACAM3P40198 252 aa16.73■□□□□ 0.27
VPS53-210ENST00000571456 CBX5P45973 191 aa16.73■□□□□ 0.27
VPS53-210ENST00000571456 HLA-DRB3P79483 266 aa16.73■□□□□ 0.27
VPS53-210ENST00000571456 KLRD1Q13241 179 aa16.73■□□□□ 0.27
VPS53-210ENST00000571456 AANATQ16613 207 aa16.73■□□□□ 0.27
VPS53-210ENST00000571456 PIP4P2Q8N4L2 257 aa16.73■□□□□ 0.27
VPS53-210ENST00000571456 RFESDQ8TAC1 157 aa16.73■□□□□ 0.27
VPS53-210ENST00000571456 SETD6Q8TBK2 473 aa16.73■□□□□ 0.27
VPS53-210ENST00000571456 FAM216AQ8WUB2 273 aa16.73■□□□□ 0.27
VPS53-210ENST00000571456 MALSU1Q96EH3 234 aa16.73■□□□□ 0.27
VPS53-210ENST00000571456 ZMAT3Q9HA38 289 aaKnown RBP16.73■□□□□ 0.27
VPS53-210ENST00000571456 IGHV3OR16-10A0A075B7F0 116 aa16.72■□□□□ 0.27
VPS53-210ENST00000571456 TRDCB7Z8K6 153 aa16.72■□□□□ 0.27
VPS53-210ENST00000571456 MMP23AO75900 390 aa16.72■□□□□ 0.27
VPS53-210ENST00000571456 IGLV1-47P01700 117 aa16.72■□□□□ 0.27
VPS53-210ENST00000571456 HTR1DP28221 377 aa16.72■□□□□ 0.27
VPS53-210ENST00000571456 LOXL3P58215 753 aa16.72■□□□□ 0.27
VPS53-210ENST00000571456 OLFML2AQ68BL7 652 aa16.72■□□□□ 0.27
VPS53-210ENST00000571456 HIST2H2BDQ6DRA6 164 aa16.72■□□□□ 0.27
VPS53-210ENST00000571456 BAIAP2L2Q6UXY1 529 aa16.72■□□□□ 0.27
VPS53-210ENST00000571456 LINC00311Q8N616 119 aa16.72■□□□□ 0.27
VPS53-210ENST00000571456 OR4A4PQ8NGN8 299 aa16.72■□□□□ 0.27
VPS53-210ENST00000571456 ZNF286AQ9HBT8 521 aa16.72■□□□□ 0.27
VPS53-210ENST00000571456 OR2S2Q9NQN1 319 aa16.72■□□□□ 0.27
VPS53-210ENST00000571456 GNG12Q9UBI6 72 aa16.72■□□□□ 0.27
VPS53-210ENST00000571456 TMEM235A6NFC5 223 aa16.71■□□□□ 0.27
VPS53-210ENST00000571456 OOSP1A8MZH6 123 aa16.71■□□□□ 0.27
VPS53-210ENST00000571456 YPEL1O60688 119 aa16.71■□□□□ 0.27
VPS53-210ENST00000571456 GDNFP39905 211 aa16.71■□□□□ 0.27
VPS53-210ENST00000571456 ARHGDIBP52566 201 aa16.71■□□□□ 0.27
VPS53-210ENST00000571456 RUSC1-AS1Q66K80 236 aa16.71■□□□□ 0.27
VPS53-210ENST00000571456 LDLRAD3Q86YD5 345 aa16.71■□□□□ 0.27
VPS53-210ENST00000571456 PDZD9Q8IXQ8 264 aa16.71■□□□□ 0.27
VPS53-210ENST00000571456 TMEM86BQ8N661 226 aa16.71■□□□□ 0.27
VPS53-210ENST00000571456 ZDHHC16Q969W1 377 aa16.71■□□□□ 0.27
VPS53-210ENST00000571456 YPEL2Q96QA6 119 aa16.71■□□□□ 0.27
VPS53-210ENST00000571456 SLC6A7Q99884 636 aa16.71■□□□□ 0.27
VPS53-210ENST00000571456 HDHD3Q9BSH5 251 aaPredicted RBP16.71■□□□□ 0.27
VPS53-210ENST00000571456 SLIRPQ9GZT3 109 aaKnown RBP16.71■□□□□ 0.27
VPS53-210ENST00000571456 NXF2Q9GZY0 626 aaKnown RBP16.71■□□□□ 0.27
VPS53-210ENST00000571456 MMP28Q9H239 520 aa16.71■□□□□ 0.27
VPS53-210ENST00000571456 MMP27Q9H306 513 aa16.71■□□□□ 0.27
VPS53-210ENST00000571456 GHITMQ9H3K2 345 aa16.71■□□□□ 0.27
VPS53-210ENST00000571456 LEUTXA8MZ59 168 aa16.7■□□□□ 0.26
VPS53-210ENST00000571456 FAM25AB3EWG3 89 aa16.7■□□□□ 0.26
VPS53-210ENST00000571456 FAM25CB3EWG5 89 aa16.7■□□□□ 0.26
VPS53-210ENST00000571456 FAM25GB3EWG6 89 aa16.7■□□□□ 0.26
VPS53-210ENST00000571456 J3QR06 171 aa16.7■□□□□ 0.26
VPS53-210ENST00000571456 ITGB1BP1O14713 200 aa16.7■□□□□ 0.26
VPS53-210ENST00000571456 RGS5O15539 181 aa16.7■□□□□ 0.26
VPS53-210ENST00000571456 HPGDSO60760 199 aa16.7■□□□□ 0.26
VPS53-210ENST00000571456 EIF4EP06730 217 aaKnown RBP16.7■□□□□ 0.26
VPS53-210ENST00000571456 CTXN2P0C2S0 81 aa16.7■□□□□ 0.26
VPS53-210ENST00000571456 ELK1P19419 428 aa16.7■□□□□ 0.26
VPS53-210ENST00000571456 ZBTB25P24278 435 aa16.7■□□□□ 0.26
VPS53-210ENST00000571456 TAS2R20P59543 309 aa16.7■□□□□ 0.26
VPS53-210ENST00000571456 HILS1P60008 231 aa16.7■□□□□ 0.26
VPS53-210ENST00000571456 HLA-DRB5Q30154 266 aa16.7■□□□□ 0.26
VPS53-210ENST00000571456 PRR18Q8N4B5 295 aa16.7■□□□□ 0.26
VPS53-210ENST00000571456 OR1L1Q8NH94 360 aa16.7■□□□□ 0.26
VPS53-210ENST00000571456 OCSTAMPQ9BR26 566 aa16.7■□□□□ 0.26
VPS53-210ENST00000571456 MEGF9Q9H1U4 602 aa16.7■□□□□ 0.26
VPS53-210ENST00000571456 SCPEP1Q9HB40 452 aa16.7■□□□□ 0.26
VPS53-210ENST00000571456 BATF3Q9NR55 127 aa16.7■□□□□ 0.26
VPS53-210ENST00000571456 DPM3Q9P2X0 92 aa16.7■□□□□ 0.26
VPS53-210ENST00000571456 PSG11Q9UQ72 335 aa16.7■□□□□ 0.26
VPS53-210ENST00000571456 POMT1Q9Y6A1 747 aa16.7■□□□□ 0.26
VPS53-210ENST00000571456 DPPA5A6NC42 116 aa16.69■□□□□ 0.26
VPS53-210ENST00000571456 CLDN34H7C241 214 aa16.69■□□□□ 0.26
VPS53-210ENST00000571456 FABP7O15540 132 aa16.69■□□□□ 0.26
VPS53-210ENST00000571456 IL3RAP26951 378 aa16.69■□□□□ 0.26
VPS53-210ENST00000571456 DLX1P56177 255 aa16.69■□□□□ 0.26
VPS53-210ENST00000571456 OR4P4Q8NGL7 312 aa16.69■□□□□ 0.26
VPS53-210ENST00000571456 MCFD2Q8NI22 146 aa16.69■□□□□ 0.26
VPS53-210ENST00000571456 EDARADDQ8WWZ3 215 aa16.69■□□□□ 0.26
VPS53-210ENST00000571456 DPAGT1Q9H3H5 408 aa16.69■□□□□ 0.26
VPS53-210ENST00000571456 A0A0U1RQK1 487 aa16.68■□□□□ 0.26
VPS53-210ENST00000571456 TRIM77I1YAP6 450 aa16.68■□□□□ 0.26
VPS53-210ENST00000571456 SULT1C2O00338 296 aa16.68■□□□□ 0.26
VPS53-210ENST00000571456 LPLP06858 475 aa16.68■□□□□ 0.26
VPS53-210ENST00000571456 PRSS3P35030 304 aa16.68■□□□□ 0.26
VPS53-210ENST00000571456 LTC4SQ16873 150 aa16.68■□□□□ 0.26
VPS53-210ENST00000571456 DEFB112Q30KQ8 113 aa16.68■□□□□ 0.26
VPS53-210ENST00000571456 MORN2Q502X0 79 aa16.68■□□□□ 0.26
VPS53-210ENST00000571456 AWAT1Q58HT5 328 aa16.68■□□□□ 0.26
VPS53-210ENST00000571456 CCDC144NLQ6NUI1 221 aa16.68■□□□□ 0.26
VPS53-210ENST00000571456 Q6YL49 198 aa16.68■□□□□ 0.26
VPS53-210ENST00000571456 Q6ZPA2 131 aa16.68■□□□□ 0.26
VPS53-210ENST00000571456 BCL6BQ8N143 479 aaPredicted RBP16.68■□□□□ 0.26
VPS53-210ENST00000571456 NUDCD2Q8WVJ2 157 aa16.68■□□□□ 0.26
VPS53-210ENST00000571456 SSMEM1Q8WWF3 244 aa16.68■□□□□ 0.26
VPS53-210ENST00000571456 C22orf15Q8WYQ4 148 aa16.68■□□□□ 0.26
VPS53-210ENST00000571456 CABLES2Q9BTV7 478 aa16.68■□□□□ 0.26
VPS53-210ENST00000571456 C6orf62Q9GZU0 229 aaPredicted RBP16.68■□□□□ 0.26
VPS53-210ENST00000571456 TOLLIPQ9H0E2 274 aa16.68■□□□□ 0.26
VPS53-210ENST00000571456 ZNRD1Q9P1U0 126 aa16.68■□□□□ 0.26
VPS53-210ENST00000571456 VGLL3A8MV65 326 aa16.67■□□□□ 0.26
VPS53-210ENST00000571456 BUB1B-PAK6H3BSN5 160 aa16.67■□□□□ 0.26
VPS53-210ENST00000571456 HSPA12AO43301 675 aa16.67■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 46.6 ms