RNA–Protein interactions for RNA: ENST00000569950.1

VPS35-211, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 1,096 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-211ENST00000569950 C5orf30Q96GV9 206 aa7.54□□□□□ -1.2
VPS35-211ENST00000569950 AGMATQ9BSE5 352 aa7.54□□□□□ -1.2
VPS35-211ENST00000569950 SUCNR1Q9BXA5 334 aa7.54□□□□□ -1.2
VPS35-211ENST00000569950 GAL3ST2Q9H3Q3 398 aa7.54□□□□□ -1.2
VPS35-211ENST00000569950 OR1A1Q9P1Q5 309 aa7.54□□□□□ -1.2
VPS35-211ENST00000569950 TRAPPC2LQ9UL33 140 aa7.54□□□□□ -1.2
VPS35-211ENST00000569950 PSG11Q9UQ72 335 aa7.54□□□□□ -1.2
VPS35-211ENST00000569950 RBMX2Q9Y388 322 aaKnown RBP7.54□□□□□ -1.2
VPS35-211ENST00000569950 TRBV6-7A0A0A0MS04 114 aa7.53□□□□□ -1.2
VPS35-211ENST00000569950 FAM25AB3EWG3 89 aa7.53□□□□□ -1.2
VPS35-211ENST00000569950 FAM25CB3EWG5 89 aa7.53□□□□□ -1.2
VPS35-211ENST00000569950 FAM25GB3EWG6 89 aa7.53□□□□□ -1.2
VPS35-211ENST00000569950 CTDSPLO15194 276 aa7.53□□□□□ -1.2
VPS35-211ENST00000569950 FABP7O15540 132 aa7.53□□□□□ -1.2
VPS35-211ENST00000569950 PROP1O75360 226 aa7.53□□□□□ -1.2
VPS35-211ENST00000569950 COX7A1P24310 79 aa7.53□□□□□ -1.2
VPS35-211ENST00000569950 PAX6P26367 422 aa7.53□□□□□ -1.2
VPS35-211ENST00000569950 PPP1CCP36873 323 aaKnown RBP7.53□□□□□ -1.2
VPS35-211ENST00000569950 UBE2E1P51965 193 aa7.53□□□□□ -1.2
VPS35-211ENST00000569950 DIAPH2-AS1Q14236 149 aa7.53□□□□□ -1.2
VPS35-211ENST00000569950 MORN2Q502X0 79 aa7.53□□□□□ -1.2
VPS35-211ENST00000569950 CT45A1Q5HYN5 189 aa7.53□□□□□ -1.2
VPS35-211ENST00000569950 LY6G6FQ5SQ64 297 aa7.53□□□□□ -1.2
VPS35-211ENST00000569950 ZNF660Q6AZW8 331 aaPredicted RBP7.53□□□□□ -1.2
VPS35-211ENST00000569950 OR52W1Q6IF63 320 aa7.53□□□□□ -1.2
VPS35-211ENST00000569950 TRAT1Q6PIZ9 186 aa7.53□□□□□ -1.2
VPS35-211ENST00000569950 ODF3L1Q8IXM7 274 aa7.53□□□□□ -1.2
VPS35-211ENST00000569950 LINC00311Q8N616 119 aa7.53□□□□□ -1.2
VPS35-211ENST00000569950 C8orf31Q8N9H6 132 aa7.53□□□□□ -1.2
VPS35-211ENST00000569950 CT45A3Q8NHU0 189 aa7.53□□□□□ -1.2
VPS35-211ENST00000569950 SMIM4Q8WVI0 70 aa7.53□□□□□ -1.2
VPS35-211ENST00000569950 TRIM63Q969Q1 353 aa7.53□□□□□ -1.2
VPS35-211ENST00000569950 ST6GALNAC6Q969X2 333 aa7.53□□□□□ -1.2
VPS35-211ENST00000569950 DIRAS2Q96HU8 199 aa7.53□□□□□ -1.2
VPS35-211ENST00000569950 PRDM13Q9H4Q3 707 aa7.53□□□□□ -1.2
VPS35-211ENST00000569950 AKIP1Q9NQ31 210 aa7.53□□□□□ -1.2
VPS35-211ENST00000569950 PTTG2Q9NZH5 202 aa7.53□□□□□ -1.2
VPS35-211ENST00000569950 ANXA10Q9UJ72 324 aa7.53□□□□□ -1.2
VPS35-211ENST00000569950 A0A0U1RQK1 487 aa7.52□□□□□ -1.21
VPS35-211ENST00000569950 MDFIC2A0A1B0GVS7 189 aa7.52□□□□□ -1.21
VPS35-211ENST00000569950 A0A1W2PPE3 182 aa7.52□□□□□ -1.21
VPS35-211ENST00000569950 A0A1W2PPH5 198 aa7.52□□□□□ -1.21
VPS35-211ENST00000569950 A0A1W2PRD5 423 aa7.52□□□□□ -1.21
VPS35-211ENST00000569950 A0A1W2PRF3 423 aa7.52□□□□□ -1.21
VPS35-211ENST00000569950 A0A1W2PRM7 423 aa7.52□□□□□ -1.21
VPS35-211ENST00000569950 J3QR06 171 aa7.52□□□□□ -1.21
VPS35-211ENST00000569950 SDCBPO00560 298 aaPredicted RBP7.52□□□□□ -1.21
VPS35-211ENST00000569950 NPFFO15130 113 aa7.52□□□□□ -1.21
VPS35-211ENST00000569950 GSTZ1O43708 216 aaPredicted RBP7.52□□□□□ -1.21
VPS35-211ENST00000569950 TUSC2O75896 110 aa7.52□□□□□ -1.21
VPS35-211ENST00000569950 DIRAS3O95661 229 aa7.52□□□□□ -1.21
VPS35-211ENST00000569950 FCER2P06734 321 aa7.52□□□□□ -1.21
VPS35-211ENST00000569950 LPLP06858 475 aa7.52□□□□□ -1.21
VPS35-211ENST00000569950 PRSS3P35030 304 aa7.52□□□□□ -1.21
VPS35-211ENST00000569950 SAA4P35542 130 aa7.52□□□□□ -1.21
VPS35-211ENST00000569950 GNG2P59768 71 aa7.52□□□□□ -1.21
VPS35-211ENST00000569950 PITPNAQ00169 270 aa7.52□□□□□ -1.21
VPS35-211ENST00000569950 LTC4SQ16873 150 aa7.52□□□□□ -1.21
VPS35-211ENST00000569950 Q3ZCU0 254 aa7.52□□□□□ -1.21
VPS35-211ENST00000569950 NCR3LG1Q68D85 454 aa7.52□□□□□ -1.21
VPS35-211ENST00000569950 SLC25A48Q6ZT89 311 aaKnown RBP7.52□□□□□ -1.21
VPS35-211ENST00000569950 H1FOOQ8IZA3 346 aaPredicted RBP7.52□□□□□ -1.21
VPS35-211ENST00000569950 ABHD12Q8N2K0 398 aa7.52□□□□□ -1.21
VPS35-211ENST00000569950 BEND2Q8NDZ0 799 aa7.52□□□□□ -1.21
VPS35-211ENST00000569950 OR10V1Q8NGI7 309 aa7.52□□□□□ -1.21
VPS35-211ENST00000569950 OR4A4PQ8NGN8 299 aa7.52□□□□□ -1.21
VPS35-211ENST00000569950 C22orf15Q8WYQ4 148 aa7.52□□□□□ -1.21
VPS35-211ENST00000569950 ZNF251Q9BRH9 671 aa7.52□□□□□ -1.21
VPS35-211ENST00000569950 ST6GALNAC5Q9BVH7 336 aa7.52□□□□□ -1.21
VPS35-211ENST00000569950 CLEC7AQ9BXN2 247 aa7.52□□□□□ -1.21
VPS35-211ENST00000569950 SRRQ9GZT4 340 aa7.52□□□□□ -1.21
VPS35-211ENST00000569950 IFI27L2Q9H2X8 130 aa7.52□□□□□ -1.21
VPS35-211ENST00000569950 SCPEP1Q9HB40 452 aa7.52□□□□□ -1.21
VPS35-211ENST00000569950 CHMP1AQ9HD42 196 aaPredicted RBP7.52□□□□□ -1.21
VPS35-211ENST00000569950 KLK11Q9UBX7 282 aa7.52□□□□□ -1.21
VPS35-211ENST00000569950 MTFP1Q9UDX5 166 aa7.52□□□□□ -1.21
VPS35-211ENST00000569950 JPT1Q9UK76 154 aa7.52□□□□□ -1.21
VPS35-211ENST00000569950 NUP50Q9UKX7 468 aa7.52□□□□□ -1.21
VPS35-211ENST00000569950 MRPS7Q9Y2R9 242 aaKnown RBP7.52□□□□□ -1.21
VPS35-211ENST00000569950 GABARAPH6UMI1 98 aa7.51□□□□□ -1.21
VPS35-211ENST00000569950 SULT1C2O00338 296 aa7.51□□□□□ -1.21
VPS35-211ENST00000569950 SPINT2O43291 252 aa7.51□□□□□ -1.21
VPS35-211ENST00000569950 YPEL1O60688 119 aa7.51□□□□□ -1.21
VPS35-211ENST00000569950 EPHA1P21709 976 aa7.51□□□□□ -1.21
VPS35-211ENST00000569950 NFYBP25208 207 aa7.51□□□□□ -1.21
VPS35-211ENST00000569950 ZNF137PP52743 207 aa7.51□□□□□ -1.21
VPS35-211ENST00000569950 HLA-DRB5Q30154 266 aa7.51□□□□□ -1.21
VPS35-211ENST00000569950 DEFB112Q30KQ8 113 aa7.51□□□□□ -1.21
VPS35-211ENST00000569950 TMEM30BQ3MIR4 351 aa7.51□□□□□ -1.21
VPS35-211ENST00000569950 RNASE12Q5GAN4 147 aaKnown RBP7.51□□□□□ -1.21
VPS35-211ENST00000569950 PYHIN1Q6K0P9 492 aa7.51□□□□□ -1.21
VPS35-211ENST00000569950 PRR18Q8N4B5 295 aa7.51□□□□□ -1.21
VPS35-211ENST00000569950 BEST4Q8NFU0 473 aa7.51□□□□□ -1.21
VPS35-211ENST00000569950 OR4D10Q8NGI6 311 aa7.51□□□□□ -1.21
VPS35-211ENST00000569950 NANPQ8TBE9 248 aa7.51□□□□□ -1.21
VPS35-211ENST00000569950 SETD6Q8TBK2 473 aa7.51□□□□□ -1.21
VPS35-211ENST00000569950 PIFOQ8TCI5 191 aa7.51□□□□□ -1.21
VPS35-211ENST00000569950 MRGPRFQ96AM1 343 aa7.51□□□□□ -1.21
VPS35-211ENST00000569950 PHF21AQ96BD5 680 aa7.51□□□□□ -1.21
VPS35-211ENST00000569950 GALMQ96C23 342 aa7.51□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 91.7 ms