RNA–Protein interactions for RNA: ENST00000568612.5

VPS35-208, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-208ENST00000568612 TTC9CQ8N5M4 171 aa2.75□□□□□ -1.97
VPS35-208ENST00000568612 IQCF1Q8N6M8 205 aa2.75□□□□□ -1.97
VPS35-208ENST00000568612 TCEANCQ8N8B7 351 aa2.75□□□□□ -1.97
VPS35-208ENST00000568612 ZNF709Q8N972 641 aa2.75□□□□□ -1.97
VPS35-208ENST00000568612 OR4K17Q8NGC6 315 aa2.75□□□□□ -1.97
VPS35-208ENST00000568612 OR10G9Q8NGN4 311 aa2.75□□□□□ -1.97
VPS35-208ENST00000568612 OR5AR1Q8NGP9 310 aa2.75□□□□□ -1.97
VPS35-208ENST00000568612 OR13C6PQ8NH95 151 aa2.75□□□□□ -1.97
VPS35-208ENST00000568612 MFSD8Q8NHS3 518 aa2.75□□□□□ -1.97
VPS35-208ENST00000568612 OCC1Q8TAD7 63 aa2.75□□□□□ -1.97
VPS35-208ENST00000568612 PP6455Q8WZ26 134 aa2.75□□□□□ -1.97
VPS35-208ENST00000568612 ST8SIA1Q92185 356 aa2.75□□□□□ -1.97
VPS35-208ENST00000568612 NAT6Q93015 286 aa2.75□□□□□ -1.97
VPS35-208ENST00000568612 PPCDCQ96CD2 204 aa2.75□□□□□ -1.97
VPS35-208ENST00000568612 ZMYND19Q96E35 227 aaPredicted RBP2.75□□□□□ -1.97
VPS35-208ENST00000568612 TVP23CQ96ET8 276 aa2.75□□□□□ -1.97
VPS35-208ENST00000568612 SDF2Q99470 211 aa2.75□□□□□ -1.97
VPS35-208ENST00000568612 TBL1YQ9BQ87 522 aa2.75□□□□□ -1.97
VPS35-208ENST00000568612 ANAPC13Q9BS18 74 aa2.75□□□□□ -1.97
VPS35-208ENST00000568612 LMF2Q9BU23 707 aaKnown RBP2.75□□□□□ -1.97
VPS35-208ENST00000568612 SMIM3Q9BZL3 60 aa2.75□□□□□ -1.97
VPS35-208ENST00000568612 WDR61Q9GZS3 305 aaKnown RBP2.75□□□□□ -1.97
VPS35-208ENST00000568612 ATG10Q9H0Y0 220 aa2.75□□□□□ -1.97
VPS35-208ENST00000568612 POLR2J3Q9H1A7 115 aaKnown RBP2.75□□□□□ -1.97
VPS35-208ENST00000568612 EGLN3Q9H6Z9 239 aa2.75□□□□□ -1.97
VPS35-208ENST00000568612 WDR76Q9H967 626 aa2.75□□□□□ -1.97
VPS35-208ENST00000568612 AMBNQ9NP70 447 aa2.75□□□□□ -1.97
VPS35-208ENST00000568612 ABRACLQ9P1F3 81 aa2.75□□□□□ -1.97
VPS35-208ENST00000568612 FBXL17Q9UF56 701 aa2.75□□□□□ -1.97
VPS35-208ENST00000568612 NAT8BQ9UHF3 227 aa2.75□□□□□ -1.97
VPS35-208ENST00000568612 ZNF580Q9UK33 172 aa2.75□□□□□ -1.97
VPS35-208ENST00000568612 ZNF443Q9Y2A4 671 aaPredicted RBP2.75□□□□□ -1.97
VPS35-208ENST00000568612 HES2Q9Y543 173 aa2.75□□□□□ -1.97
VPS35-208ENST00000568612 NCKAP5O14513 1909 aa2.75□□□□□ -1.97
VPS35-208ENST00000568612 SNED1Q8TER0 1413 aa2.75□□□□□ -1.97
VPS35-208ENST00000568612 SIP14410 1827 aa2.75□□□□□ -1.97
VPS35-208ENST00000568612 TTC3P53804 2025 aa2.75□□□□□ -1.97
VPS35-208ENST00000568612 LOC285556D6RIA3 1793 aa2.74□□□□□ -1.97
VPS35-208ENST00000568612 TDRD15B5MCY1 1934 aaKnown RBP2.74□□□□□ -1.97
VPS35-208ENST00000568612 A0A087WV48 116 aa2.74□□□□□ -1.97
VPS35-208ENST00000568612 KIR2DS1A0A191URI9 304 aa2.74□□□□□ -1.97
VPS35-208ENST00000568612 C13orf42A0A1B0GVH6 325 aa2.74□□□□□ -1.97
VPS35-208ENST00000568612 hADV38S2A0JD32 116 aa2.74□□□□□ -1.97
VPS35-208ENST00000568612 GAGE10A6NGK3 116 aa2.74□□□□□ -1.97
VPS35-208ENST00000568612 NPIPB13A6NJU9 1138 aa2.74□□□□□ -1.97
VPS35-208ENST00000568612 NPIPB5A8MRT5 1133 aa2.74□□□□□ -1.97
VPS35-208ENST00000568612 A8MT66 165 aa2.74□□□□□ -1.97
VPS35-208ENST00000568612 FABP5P3A8MUU1 101 aa2.74□□□□□ -1.97
VPS35-208ENST00000568612 NPIPB4C9JG80 1138 aa2.74□□□□□ -1.97
VPS35-208ENST00000568612 F5H5K5 113 aa2.74□□□□□ -1.97
VPS35-208ENST00000568612 M0R1X1 148 aa2.74□□□□□ -1.97
VPS35-208ENST00000568612 SIRPB1O00241 398 aa2.74□□□□□ -1.97
VPS35-208ENST00000568612 GAPDHSO14556 408 aaPredicted RBP2.74□□□□□ -1.97
VPS35-208ENST00000568612 TAAR5O14804 337 aa2.74□□□□□ -1.97
VPS35-208ENST00000568612 SLC31A1O15431 190 aa2.74□□□□□ -1.97
VPS35-208ENST00000568612 ERI3O43414 337 aaKnown RBP2.74□□□□□ -1.97
VPS35-208ENST00000568612 CD5LO43866 347 aa2.74□□□□□ -1.97
VPS35-208ENST00000568612 SFT2D2O95562 160 aa2.74□□□□□ -1.97
VPS35-208ENST00000568612 HLA-DRB1P01911 266 aa2.74□□□□□ -1.97
VPS35-208ENST00000568612 ATP1B1P05026 303 aa2.74□□□□□ -1.97
VPS35-208ENST00000568612 RHOCP08134 193 aa2.74□□□□□ -1.97
VPS35-208ENST00000568612 FCGR2AP12318 317 aa2.74□□□□□ -1.97
VPS35-208ENST00000568612 ADRA2CP18825 462 aa2.74□□□□□ -1.97
VPS35-208ENST00000568612 ALOX5APP20292 161 aa2.74□□□□□ -1.97
VPS35-208ENST00000568612 RPS4Y1P22090 263 aaKnown RBP2.74□□□□□ -1.97
VPS35-208ENST00000568612 HIST1H1TP22492 207 aaPredicted RBP2.74□□□□□ -1.97
VPS35-208ENST00000568612 PPIBP23284 216 aaKnown RBP2.74□□□□□ -1.97
VPS35-208ENST00000568612 RPS12P25398 132 aaKnown RBP2.74□□□□□ -1.97
VPS35-208ENST00000568612 NPY1RP25929 384 aa2.74□□□□□ -1.97
VPS35-208ENST00000568612 FCGR2BP31994 310 aaPredicted RBP2.74□□□□□ -1.97
VPS35-208ENST00000568612 BSGP35613 385 aa2.74□□□□□ -1.97
VPS35-208ENST00000568612 P2RY1P47900 373 aa2.74□□□□□ -1.97
VPS35-208ENST00000568612 CNN1P51911 297 aaKnown RBP2.74□□□□□ -1.97
VPS35-208ENST00000568612 SLC25A1P53007 311 aa2.74□□□□□ -1.97
VPS35-208ENST00000568612 PITX1P78337 314 aaPredicted RBP2.74□□□□□ -1.97
VPS35-208ENST00000568612 NTHL1P78549 312 aa2.74□□□□□ -1.97
VPS35-208ENST00000568612 SLC25A11Q02978 314 aaKnown RBP2.74□□□□□ -1.97
VPS35-208ENST00000568612 RUNX3Q13761 415 aa2.74□□□□□ -1.97
VPS35-208ENST00000568612 KIR2DS1Q14954 304 aa2.74□□□□□ -1.97
VPS35-208ENST00000568612 TAF13Q15543 124 aa2.74□□□□□ -1.97
VPS35-208ENST00000568612 OR7A5Q15622 319 aa2.74□□□□□ -1.97
VPS35-208ENST00000568612 CDKN3Q16667 212 aa2.74□□□□□ -1.97
VPS35-208ENST00000568612 HLA-BQ31612 363 aa2.74□□□□□ -1.97
VPS35-208ENST00000568612 TECRLQ5HYJ1 363 aa2.74□□□□□ -1.97
VPS35-208ENST00000568612 UBE2NLQ5JXB2 153 aa2.74□□□□□ -1.97
VPS35-208ENST00000568612 C6orf136Q5SQH8 315 aa2.74□□□□□ -1.97
VPS35-208ENST00000568612 DCST2Q5T1A1 773 aa2.74□□□□□ -1.97
VPS35-208ENST00000568612 LCE1AQ5T7P2 110 aa2.74□□□□□ -1.97
VPS35-208ENST00000568612 ASPHD1Q5U4P2 390 aa2.74□□□□□ -1.97
VPS35-208ENST00000568612 ZFAND6Q6FIF0 208 aa2.74□□□□□ -1.97
VPS35-208ENST00000568612 TMEM211Q6ICI0 200 aa2.74□□□□□ -1.97
VPS35-208ENST00000568612 SPSB3Q6PJ21 355 aa2.74□□□□□ -1.97
VPS35-208ENST00000568612 GLIPR1L1Q6UWM5 242 aa2.74□□□□□ -1.97
VPS35-208ENST00000568612 SBSNQ6UWP8 590 aa2.74□□□□□ -1.97
VPS35-208ENST00000568612 SIGLEC15Q6ZMC9 328 aa2.74□□□□□ -1.97
VPS35-208ENST00000568612 UMODL1-AS1Q8N2C9 162 aa2.74□□□□□ -1.97
VPS35-208ENST00000568612 BCORP1Q8N888 145 aa2.74□□□□□ -1.97
VPS35-208ENST00000568612 Q8N976 141 aa2.74□□□□□ -1.97
VPS35-208ENST00000568612 ZNF439Q8NDP4 499 aa2.74□□□□□ -1.97
VPS35-208ENST00000568612 OR4F17Q8NGA8 305 aa2.74□□□□□ -1.97
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms