RNA–Protein interactions for RNA: ENST00000568422.6

CLN3-231, Transcript of CLN3, battenin, human

TSL 5

Gene CLN3, Length 1,168 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLN3-231	ENST00000568422	PGLYRP3	Q96LB9	341 aa		13.2	□□□□□ -0.3
CLN3-231	ENST00000568422	CLEC2D	Q9UHP7	191 aa		13.2	□□□□□ -0.3
CLN3-231	ENST00000568422	PEX16	Q9Y5Y5	336 aa		13.2	□□□□□ -0.3
CLN3-231	ENST00000568422	TRBV5-7	A0A0A0MS05	114 aa		13.19	□□□□□ -0.3
CLN3-231	ENST00000568422	MAGEA13P	A6NCF6	341 aa		13.19	□□□□□ -0.3
CLN3-231	ENST00000568422	ZNF736	B4DX44	427 aa	Predicted RBP	13.19	□□□□□ -0.3
CLN3-231	ENST00000568422	SLC31A2	O15432	143 aa		13.19	□□□□□ -0.3
CLN3-231	ENST00000568422	FUT3	P21217	361 aa		13.19	□□□□□ -0.3
CLN3-231	ENST00000568422	PSMB8	P28062	276 aa		13.19	□□□□□ -0.3
CLN3-231	ENST00000568422	VHL	P40337	213 aa		13.19	□□□□□ -0.3
CLN3-231	ENST00000568422	F2RL1	P55085	397 aa		13.19	□□□□□ -0.3
CLN3-231	ENST00000568422	TTC23	Q5W5X9	447 aa		13.19	□□□□□ -0.3
CLN3-231	ENST00000568422	AWAT2	Q6E213	333 aa		13.19	□□□□□ -0.3
CLN3-231	ENST00000568422	PRR18	Q8N4B5	295 aa		13.19	□□□□□ -0.3
CLN3-231	ENST00000568422	ZNF485	Q8NCK3	441 aa		13.19	□□□□□ -0.3
CLN3-231	ENST00000568422	SETD9	Q8NE22	299 aa		13.19	□□□□□ -0.3
CLN3-231	ENST00000568422	OR4K15	Q8NH41	348 aa		13.19	□□□□□ -0.3
CLN3-231	ENST00000568422	THRSP	Q92748	146 aa		13.19	□□□□□ -0.3
CLN3-231	ENST00000568422	HSPB9	Q9BQS6	159 aa		13.19	□□□□□ -0.3
CLN3-231	ENST00000568422	OR2S2	Q9NQN1	319 aa		13.19	□□□□□ -0.3
CLN3-231	ENST00000568422	KCNIP1	Q9NZI2	227 aa		13.19	□□□□□ -0.3
CLN3-231	ENST00000568422	BAG2	O95816	211 aa		13.18	□□□□□ -0.3
CLN3-231	ENST00000568422	MGMT	P16455	207 aa		13.18	□□□□□ -0.3
CLN3-231	ENST00000568422	RCC1	P18754	421 aa	Predicted RBP	13.18	□□□□□ -0.3
CLN3-231	ENST00000568422	CAPG	P40121	348 aa		13.18	□□□□□ -0.3
CLN3-231	ENST00000568422	LSAMP	Q13449	338 aa		13.18	□□□□□ -0.3
CLN3-231	ENST00000568422	DOC2B	Q14184	412 aa		13.18	□□□□□ -0.3
CLN3-231	ENST00000568422	DEFB136	Q30KP8	78 aa		13.18	□□□□□ -0.3
CLN3-231	ENST00000568422	MORN2	Q502X0	79 aa		13.18	□□□□□ -0.3
CLN3-231	ENST00000568422	NKAIN3	Q8N8D7	197 aa		13.18	□□□□□ -0.3
CLN3-231	ENST00000568422	OR10V1	Q8NGI7	309 aa		13.18	□□□□□ -0.3
CLN3-231	ENST00000568422	OR1L1	Q8NH94	360 aa		13.18	□□□□□ -0.3
CLN3-231	ENST00000568422	OR14A2	Q96R54	314 aa		13.18	□□□□□ -0.3
CLN3-231	ENST00000568422	UQCC2	Q9BRT2	126 aa		13.18	□□□□□ -0.3
CLN3-231	ENST00000568422	SELENOI	Q9C0D9	397 aa		13.18	□□□□□ -0.3
CLN3-231	ENST00000568422	C8orf4	Q9NR00	106 aa		13.18	□□□□□ -0.3
CLN3-231	ENST00000568422	MBNL3	Q9NUK0	354 aa	Known RBP	13.18	□□□□□ -0.3
CLN3-231	ENST00000568422	ZNF107	Q9UII5	783 aa	Predicted RBP	13.18	□□□□□ -0.3
CLN3-231	ENST00000568422	LSM4	Q9Y4Z0	139 aa	Known RBP	13.18	□□□□□ -0.3
CLN3-231	ENST00000568422	SEC14L6	B5MCN3	397 aa		13.17	□□□□□ -0.3
CLN3-231	ENST00000568422	CD1A	P06126	327 aa		13.17	□□□□□ -0.3
CLN3-231	ENST00000568422	LUM	P51884	338 aa	Predicted RBP	13.17	□□□□□ -0.3
CLN3-231	ENST00000568422	ST3GAL4	Q11206	333 aa		13.17	□□□□□ -0.3
CLN3-231	ENST00000568422	FHL3	Q13643	280 aa		13.17	□□□□□ -0.3
CLN3-231	ENST00000568422	LY6G6F	Q5SQ64	297 aa		13.17	□□□□□ -0.3
CLN3-231	ENST00000568422	ZFP41	Q8N8Y5	198 aa		13.17	□□□□□ -0.3
CLN3-231	ENST00000568422	MYOZ3	Q8TDC0	251 aa		13.17	□□□□□ -0.3
CLN3-231	ENST00000568422	UBE2E2	Q96LR5	201 aa		13.17	□□□□□ -0.3
CLN3-231	ENST00000568422		Q96M66	194 aa		13.17	□□□□□ -0.3
CLN3-231	ENST00000568422	KCTD7	Q96MP8	289 aa		13.17	□□□□□ -0.3
CLN3-231	ENST00000568422	BANF2	Q9H503	90 aa		13.17	□□□□□ -0.3
CLN3-231	ENST00000568422	TAF9B	Q9HBM6	251 aa		13.17	□□□□□ -0.3
CLN3-231	ENST00000568422	GHRL	Q9UBU3	117 aa		13.17	□□□□□ -0.3
CLN3-231	ENST00000568422	JPT1	Q9UK76	154 aa		13.17	□□□□□ -0.3
CLN3-231	ENST00000568422	LRRC42	Q9Y546	428 aa		13.17	□□□□□ -0.3
CLN3-231	ENST00000568422	CRTAP	O75718	401 aa	Predicted RBP	13.16	□□□□□ -0.3
CLN3-231	ENST00000568422	RGS11	O94810	467 aa		13.16	□□□□□ -0.3
CLN3-231	ENST00000568422	MAS1	P04201	325 aa		13.16	□□□□□ -0.3
CLN3-231	ENST00000568422	MAPK3	P27361	379 aa	Predicted RBP	13.16	□□□□□ -0.3
CLN3-231	ENST00000568422	INSL3	P51460	131 aa		13.16	□□□□□ -0.3
CLN3-231	ENST00000568422	HTD2	P86397	168 aa		13.16	□□□□□ -0.3
CLN3-231	ENST00000568422	MMD	Q15546	238 aa		13.16	□□□□□ -0.3
CLN3-231	ENST00000568422	TMEM65	Q6PI78	240 aa		13.16	□□□□□ -0.3
CLN3-231	ENST00000568422	LYPD6	Q86Y78	171 aa		13.16	□□□□□ -0.3
CLN3-231	ENST00000568422	CYGB	Q8WWM9	190 aa		13.16	□□□□□ -0.3
CLN3-231	ENST00000568422	DERL3	Q96Q80	235 aa		13.16	□□□□□ -0.3
CLN3-231	ENST00000568422	ABHD14A	Q9BUJ0	271 aa		13.16	□□□□□ -0.3
CLN3-231	ENST00000568422	SCOC	Q9UIL1	159 aa		13.16	□□□□□ -0.3
CLN3-231	ENST00000568422		U3KQK5	164 aa		13.16	□□□□□ -0.3
CLN3-231	ENST00000568422		A0A1W2PPK0	400 aa		13.15	□□□□□ -0.3
CLN3-231	ENST00000568422	EFCAB10	A6NFE3	127 aa		13.15	□□□□□ -0.3
CLN3-231	ENST00000568422	YPEL1	O60688	119 aa		13.15	□□□□□ -0.3
CLN3-231	ENST00000568422	PDCD6	O75340	191 aa		13.15	□□□□□ -0.3
CLN3-231	ENST00000568422	OR8U8	P0C7N1	319 aa		13.15	□□□□□ -0.3
CLN3-231	ENST00000568422	VSIG8	P0DPA2	414 aa		13.15	□□□□□ -0.3
CLN3-231	ENST00000568422	PPIF	P30405	207 aa	Known RBP	13.15	□□□□□ -0.3
CLN3-231	ENST00000568422	ECI1	P42126	302 aa		13.15	□□□□□ -0.3
CLN3-231	ENST00000568422	ADARB1	P78563	741 aa	Known RBP	13.15	□□□□□ -0.3
CLN3-231	ENST00000568422	RUNX1	Q01196	453 aa		13.15	□□□□□ -0.3
CLN3-231	ENST00000568422	SIGIRR	Q6IA17	410 aa		13.15	□□□□□ -0.3
CLN3-231	ENST00000568422	PACRGL	Q8N7B6	248 aa		13.15	□□□□□ -0.3
CLN3-231	ENST00000568422	OR11H1	Q8NG94	326 aa		13.15	□□□□□ -0.3
CLN3-231	ENST00000568422	GGH	Q92820	318 aa		13.15	□□□□□ -0.3
CLN3-231	ENST00000568422	YPEL2	Q96QA6	119 aa		13.15	□□□□□ -0.3
CLN3-231	ENST00000568422	CST11	Q9H112	138 aa		13.15	□□□□□ -0.3
CLN3-231	ENST00000568422	CNOT2	Q9NZN8	540 aa	Known RBP	13.15	□□□□□ -0.3
CLN3-231	ENST00000568422	UBE2QL1	A1L167	161 aa		13.14	□□□□□ -0.31
CLN3-231	ENST00000568422	HLA-DRB1	P01911	266 aa		13.14	□□□□□ -0.31
CLN3-231	ENST00000568422	SLC2A2	P11168	524 aa	Predicted RBP	13.14	□□□□□ -0.31
CLN3-231	ENST00000568422	ACTB	P60709	375 aa		13.14	□□□□□ -0.31
CLN3-231	ENST00000568422	ODF3L1	Q8IXM7	274 aa		13.14	□□□□□ -0.31
CLN3-231	ENST00000568422	DHRSX	Q8N5I4	330 aa		13.14	□□□□□ -0.31
CLN3-231	ENST00000568422	MRPL30	Q8TCC3	161 aa	Known RBP	13.14	□□□□□ -0.31
CLN3-231	ENST00000568422	GALM	Q96C23	342 aa		13.14	□□□□□ -0.31
CLN3-231	ENST00000568422	ZNF251	Q9BRH9	671 aa		13.14	□□□□□ -0.31
CLN3-231	ENST00000568422	OR51J1	Q9H342	316 aa		13.14	□□□□□ -0.31
CLN3-231	ENST00000568422	VSIG4	Q9Y279	399 aa		13.14	□□□□□ -0.31
CLN3-231	ENST00000568422	PNMA8C	A0A1B0GUJ8	204 aa		13.13	□□□□□ -0.31
CLN3-231	ENST00000568422	EBAG9	O00559	213 aa		13.13	□□□□□ -0.31
CLN3-231	ENST00000568422	MYL12B	O14950	172 aa		13.13	□□□□□ -0.31

Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms