RNA–Protein interactions for RNA: ENST00000568139.5

CLK3-221, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 918 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-221ENST00000568139 TRAPPC2LQ9UL33 140 aa13.61□□□□□ -0.23
CLK3-221ENST00000568139 ORC6Q9Y5N6 252 aa13.61□□□□□ -0.23
CLK3-221ENST00000568139 EPPK1P58107 5090 aaKnown RBP13.6□□□□□ -0.23
CLK3-221ENST00000568139 MAGEA13PA6NCF6 341 aa13.6□□□□□ -0.23
CLK3-221ENST00000568139 HBZP02008 142 aa13.6□□□□□ -0.23
CLK3-221ENST00000568139 GTF2F2P13984 249 aa13.6□□□□□ -0.23
CLK3-221ENST00000568139 CNTFRP26992 372 aa13.6□□□□□ -0.23
CLK3-221ENST00000568139 ACTBP60709 375 aa13.6□□□□□ -0.23
CLK3-221ENST00000568139 RAB40BQ12829 278 aa13.6□□□□□ -0.23
CLK3-221ENST00000568139 C6orf183Q5T699 404 aa13.6□□□□□ -0.23
CLK3-221ENST00000568139 ACSM6Q6P461 480 aa13.6□□□□□ -0.23
CLK3-221ENST00000568139 GAPTQ8N292 157 aa13.6□□□□□ -0.23
CLK3-221ENST00000568139 OR6Q1Q8NGQ2 317 aa13.6□□□□□ -0.23
CLK3-221ENST00000568139 OR4K15Q8NH41 348 aa13.6□□□□□ -0.23
CLK3-221ENST00000568139 OR1L1Q8NH94 360 aa13.6□□□□□ -0.23
CLK3-221ENST00000568139 TM2D3Q9BRN9 247 aa13.6□□□□□ -0.23
CLK3-221ENST00000568139 ANKRD60Q9BZ19 345 aa13.6□□□□□ -0.23
CLK3-221ENST00000568139 ALX4Q9H161 411 aaPredicted RBP13.6□□□□□ -0.23
CLK3-221ENST00000568139 SPACA1Q9HBV2 294 aa13.6□□□□□ -0.23
CLK3-221ENST00000568139 AMBNQ9NP70 447 aa13.6□□□□□ -0.23
CLK3-221ENST00000568139 PARP11Q9NR21 331 aa13.6□□□□□ -0.23
CLK3-221ENST00000568139 MRPS18AQ9NVS2 196 aaKnown RBP13.6□□□□□ -0.23
CLK3-221ENST00000568139 LYSTQ99698 3801 aa13.59□□□□□ -0.23
CLK3-221ENST00000568139 TRIM64CA6NLI5 447 aa13.59□□□□□ -0.23
CLK3-221ENST00000568139 MCRIP1C9JLW8 97 aa13.59□□□□□ -0.23
CLK3-221ENST00000568139 LINC01619G3V211 115 aa13.59□□□□□ -0.23
CLK3-221ENST00000568139 EI24O14681 340 aa13.59□□□□□ -0.23
CLK3-221ENST00000568139 BDKRB2P30411 391 aa13.59□□□□□ -0.23
CLK3-221ENST00000568139 SLURP1P55000 103 aa13.59□□□□□ -0.23
CLK3-221ENST00000568139 PPP3R1P63098 170 aa13.59□□□□□ -0.23
CLK3-221ENST00000568139 GABPB1Q06547 395 aaPredicted RBP13.59□□□□□ -0.23
CLK3-221ENST00000568139 C5orf64Q2M2E5 130 aa13.59□□□□□ -0.23
CLK3-221ENST00000568139 SLC22A6Q4U2R8 563 aa13.59□□□□□ -0.23
CLK3-221ENST00000568139 MORN2Q502X0 79 aa13.59□□□□□ -0.23
CLK3-221ENST00000568139 C19orf54Q5BKX5 351 aa13.59□□□□□ -0.23
CLK3-221ENST00000568139 RPL22L1Q6P5R6 122 aaKnown RBP13.59□□□□□ -0.23
CLK3-221ENST00000568139 TRAT1Q6PIZ9 186 aa13.59□□□□□ -0.23
CLK3-221ENST00000568139 ODF3L1Q8IXM7 274 aa13.59□□□□□ -0.23
CLK3-221ENST00000568139 OR52I1Q8NGK6 324 aa13.59□□□□□ -0.23
CLK3-221ENST00000568139 RHOXF1Q8NHV9 184 aa13.59□□□□□ -0.23
CLK3-221ENST00000568139 ZNF251Q9BRH9 671 aa13.59□□□□□ -0.23
CLK3-221ENST00000568139 TOLLIPQ9H0E2 274 aa13.59□□□□□ -0.23
CLK3-221ENST00000568139 GHITMQ9H3K2 345 aa13.59□□□□□ -0.23
CLK3-221ENST00000568139 ETAA1Q9NY74 926 aa13.59□□□□□ -0.23
CLK3-221ENST00000568139 GMPPBQ9Y5P6 360 aa13.59□□□□□ -0.23
CLK3-221ENST00000568139 BIRC6Q9NR09 4857 aa13.58□□□□□ -0.24
CLK3-221ENST00000568139 NBR2O15453 112 aa13.58□□□□□ -0.24
CLK3-221ENST00000568139 RCC1P18754 421 aaPredicted RBP13.58□□□□□ -0.24
CLK3-221ENST00000568139 BLVRBP30043 206 aaPredicted RBP13.58□□□□□ -0.24
CLK3-221ENST00000568139 ALDH3A2P51648 485 aa13.58□□□□□ -0.24
CLK3-221ENST00000568139 CRIP2P52943 208 aaPredicted RBP13.58□□□□□ -0.24
CLK3-221ENST00000568139 ADARB1P78563 741 aaKnown RBP13.58□□□□□ -0.24
CLK3-221ENST00000568139 GPR176Q14439 515 aa13.58□□□□□ -0.24
CLK3-221ENST00000568139 CCDC58Q4VC31 144 aa13.58□□□□□ -0.24
CLK3-221ENST00000568139 ZFAND6Q6FIF0 208 aa13.58□□□□□ -0.24
CLK3-221ENST00000568139 XAF1Q6GPH4 301 aa13.58□□□□□ -0.24
CLK3-221ENST00000568139 LIN54Q6MZP7 749 aa13.58□□□□□ -0.24
CLK3-221ENST00000568139 PRR18Q8N4B5 295 aa13.58□□□□□ -0.24
CLK3-221ENST00000568139 NPBQ8NG41 125 aa13.58□□□□□ -0.24
CLK3-221ENST00000568139 Q96MT0 163 aa13.58□□□□□ -0.24
CLK3-221ENST00000568139 NABP2Q9BQ15 211 aa13.58□□□□□ -0.24
CLK3-221ENST00000568139 MRPS28Q9Y2Q9 187 aaKnown RBP13.58□□□□□ -0.24
CLK3-221ENST00000568139 SOX15O60248 233 aa13.57□□□□□ -0.24
CLK3-221ENST00000568139 NDUFA3O95167 84 aa13.57□□□□□ -0.24
CLK3-221ENST00000568139 LGALS1P09382 135 aaKnown RBP13.57□□□□□ -0.24
CLK3-221ENST00000568139 LIMS3P0CW19 117 aa13.57□□□□□ -0.24
CLK3-221ENST00000568139 LIMS4P0CW20 117 aa13.57□□□□□ -0.24
CLK3-221ENST00000568139 IGFBP3P17936 291 aaPredicted RBP13.57□□□□□ -0.24
CLK3-221ENST00000568139 ARPC1AQ92747 370 aa13.57□□□□□ -0.24
CLK3-221ENST00000568139 ORAI1Q96D31 301 aa13.57□□□□□ -0.24
CLK3-221ENST00000568139 MRPS24Q96EL2 167 aaKnown RBP13.57□□□□□ -0.24
CLK3-221ENST00000568139 ZNF184Q99676 751 aaPredicted RBP13.57□□□□□ -0.24
CLK3-221ENST00000568139 MRPL20Q9BYC9 149 aaKnown RBP13.57□□□□□ -0.24
CLK3-221ENST00000568139 EDA2RQ9HAV5 297 aa13.57□□□□□ -0.24
CLK3-221ENST00000568139 OR2S2Q9NQN1 319 aa13.57□□□□□ -0.24
CLK3-221ENST00000568139 CSMD3Q7Z407 3707 aa13.57□□□□□ -0.24
CLK3-221ENST00000568139 IGHV4OR15-8A0A075B7B6 117 aa13.56□□□□□ -0.24
CLK3-221ENST00000568139 A0A087WW49 117 aa13.56□□□□□ -0.24
CLK3-221ENST00000568139 LDLRAD4O15165 306 aa13.56□□□□□ -0.24
CLK3-221ENST00000568139 CA11O75493 328 aa13.56□□□□□ -0.24
CLK3-221ENST00000568139 GPX5O75715 221 aa13.56□□□□□ -0.24
CLK3-221ENST00000568139 SC5DO75845 299 aa13.56□□□□□ -0.24
CLK3-221ENST00000568139 OR8U9P0C7N5 309 aa13.56□□□□□ -0.24
CLK3-221ENST00000568139 RASSF2P50749 326 aa13.56□□□□□ -0.24
CLK3-221ENST00000568139 NDPQ00604 133 aa13.56□□□□□ -0.24
CLK3-221ENST00000568139 RIPK1Q13546 671 aa13.56□□□□□ -0.24
CLK3-221ENST00000568139 RAB12Q6IQ22 244 aa13.56□□□□□ -0.24
CLK3-221ENST00000568139 ABHD14AQ9BUJ0 271 aa13.56□□□□□ -0.24
CLK3-221ENST00000568139 CST11Q9H112 138 aa13.56□□□□□ -0.24
CLK3-221ENST00000568139 TAF9BQ9HBM6 251 aa13.56□□□□□ -0.24
CLK3-221ENST00000568139 MBNL3Q9NUK0 354 aaKnown RBP13.56□□□□□ -0.24
CLK3-221ENST00000568139 ERGIC3Q9Y282 383 aa13.56□□□□□ -0.24
CLK3-221ENST00000568139 FBXO7Q9Y3I1 522 aa13.56□□□□□ -0.24
CLK3-221ENST00000568139 RPL36Q9Y3U8 105 aaKnown RBP13.56□□□□□ -0.24
CLK3-221ENST00000568139 DNAH1Q9P2D7 4330 aa13.56□□□□□ -0.24
CLK3-221ENST00000568139 A0A1W2PN81 502 aa13.55□□□□□ -0.24
CLK3-221ENST00000568139 A8MZ25 164 aa13.55□□□□□ -0.24
CLK3-221ENST00000568139 IGHV4-30-4P0DP06 118 aa13.55□□□□□ -0.24
CLK3-221ENST00000568139 CHRNA7P36544 502 aa13.55□□□□□ -0.24
CLK3-221ENST00000568139 GNMTQ14749 295 aa13.55□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 56.4 ms