RNA–Protein interactions for RNA: ENST00000566354.1

VPS4A-204, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 1 (best)

Gene VPS4A, Length 2,329 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-204ENST00000566354 TMEM171Q8WVE6 324 aa11.32□□□□□ -0.6
VPS4A-204ENST00000566354 SLAMF9Q96A28 289 aa11.32□□□□□ -0.6
VPS4A-204ENST00000566354 SPSB4Q96A44 273 aa11.32□□□□□ -0.6
VPS4A-204ENST00000566354 MUCL1Q96DR8 90 aa11.32□□□□□ -0.6
VPS4A-204ENST00000566354 GGACTQ9BVM4 153 aa11.32□□□□□ -0.6
VPS4A-204ENST00000566354 PTPRQQ9UMZ3 2332 aa11.32□□□□□ -0.6
VPS4A-204ENST00000566354 SPENQ96T58 3664 aaKnown RBP11.32□□□□□ -0.6
VPS4A-204ENST00000566354 A0A087WWC5 75 aa11.32□□□□□ -0.6
VPS4A-204ENST00000566354 TSTD3H0UI37 97 aa11.32□□□□□ -0.6
VPS4A-204ENST00000566354 DDTP30046 118 aa11.32□□□□□ -0.6
VPS4A-204ENST00000566354 SRD5A2P31213 254 aa11.32□□□□□ -0.6
VPS4A-204ENST00000566354 CLDN15P56746 228 aa11.32□□□□□ -0.6
VPS4A-204ENST00000566354 DAZAP2Q15038 168 aaPredicted RBP11.32□□□□□ -0.6
VPS4A-204ENST00000566354 CEACAM16Q2WEN9 425 aa11.32□□□□□ -0.6
VPS4A-204ENST00000566354 SP5Q6BEB4 398 aaPredicted RBP11.32□□□□□ -0.6
VPS4A-204ENST00000566354 OR56B2PQ8NGI1 322 aa11.32□□□□□ -0.6
VPS4A-204ENST00000566354 EXTL1Q92935 676 aa11.32□□□□□ -0.6
VPS4A-204ENST00000566354 MEGF10Q96KG7 1140 aa11.32□□□□□ -0.6
VPS4A-204ENST00000566354 ABHD14AQ9BUJ0 271 aa11.32□□□□□ -0.6
VPS4A-204ENST00000566354 HIPK2Q9H2X6 1198 aa11.32□□□□□ -0.6
VPS4A-204ENST00000566354 BOKQ9UMX3 212 aaPredicted RBP11.32□□□□□ -0.6
VPS4A-204ENST00000566354 PPIHO43447 177 aaKnown RBP11.31□□□□□ -0.6
VPS4A-204ENST00000566354 ADAM20O43506 726 aa11.31□□□□□ -0.6
VPS4A-204ENST00000566354 TRAPPC6AO75865 159 aa11.31□□□□□ -0.6
VPS4A-204ENST00000566354 SRP19P09132 144 aaKnown RBP11.31□□□□□ -0.6
VPS4A-204ENST00000566354 VDAC1P21796 283 aa11.31□□□□□ -0.6
VPS4A-204ENST00000566354 G0S2P27469 103 aa11.31□□□□□ -0.6
VPS4A-204ENST00000566354 GDF1P27539 372 aa11.31□□□□□ -0.6
VPS4A-204ENST00000566354 NPBWR2P48146 333 aa11.31□□□□□ -0.6
VPS4A-204ENST00000566354 ID3Q02535 119 aa11.31□□□□□ -0.6
VPS4A-204ENST00000566354 CXorf66Q5JRM2 361 aaPredicted RBP11.31□□□□□ -0.6
VPS4A-204ENST00000566354 SPACA3Q8IXA5 215 aa11.31□□□□□ -0.6
VPS4A-204ENST00000566354 Q9N2K0 584 aa11.31□□□□□ -0.6
VPS4A-204ENST00000566354 RFNGQ9Y644 331 aa11.31□□□□□ -0.6
VPS4A-204ENST00000566354 ZZEF1O43149 2961 aa11.31□□□□□ -0.6
VPS4A-204ENST00000566354 MAP1BP46821 2468 aaKnown RBP11.31□□□□□ -0.6
VPS4A-204ENST00000566354 PIEZO2Q9H5I5 2752 aa11.31□□□□□ -0.6
VPS4A-204ENST00000566354 HSD17B6O14756 317 aa11.31□□□□□ -0.6
VPS4A-204ENST00000566354 HSPB1P04792 205 aaKnown RBP11.31□□□□□ -0.6
VPS4A-204ENST00000566354 HIST1H1BP16401 226 aaKnown RBP11.31□□□□□ -0.6
VPS4A-204ENST00000566354 RPS10P46783 165 aaKnown RBP11.31□□□□□ -0.6
VPS4A-204ENST00000566354 NMSQ5H8A3 153 aa11.31□□□□□ -0.6
VPS4A-204ENST00000566354 WIPI1Q5MNZ9 446 aaPredicted RBP11.31□□□□□ -0.6
VPS4A-204ENST00000566354 DPPA3Q6W0C5 159 aa11.31□□□□□ -0.6
VPS4A-204ENST00000566354 ZNF818PQ6ZRF7 136 aa11.31□□□□□ -0.6
VPS4A-204ENST00000566354 GGNQ86UU5 652 aa11.31□□□□□ -0.6
VPS4A-204ENST00000566354 FGFBP3Q8TAT2 258 aa11.31□□□□□ -0.6
VPS4A-204ENST00000566354 RAB39BQ96DA2 213 aa11.31□□□□□ -0.6
VPS4A-204ENST00000566354 RBMXL1Q96E39 390 aaKnown RBP11.31□□□□□ -0.6
VPS4A-204ENST00000566354 C1QTNF5Q9BXJ0 243 aa11.31□□□□□ -0.6
VPS4A-204ENST00000566354 MAGT1Q9H0U3 335 aa11.31□□□□□ -0.6
VPS4A-204ENST00000566354 GPR35Q9HC97 309 aa11.31□□□□□ -0.6
VPS4A-204ENST00000566354 CACNA1AO00555 2505 aa11.31□□□□□ -0.6
VPS4A-204ENST00000566354 CXorf65A6NEN9 183 aa11.3□□□□□ -0.6
VPS4A-204ENST00000566354 FAM166BA8MTA8 275 aa11.3□□□□□ -0.6
VPS4A-204ENST00000566354 NAPSAO96009 420 aa11.3□□□□□ -0.6
VPS4A-204ENST00000566354 CELA3AP09093 270 aa11.3□□□□□ -0.6
VPS4A-204ENST00000566354 CD46P15529 392 aa11.3□□□□□ -0.6
VPS4A-204ENST00000566354 HOXA5P20719 270 aa11.3□□□□□ -0.6
VPS4A-204ENST00000566354 UCP1P25874 307 aa11.3□□□□□ -0.6
VPS4A-204ENST00000566354 TAGLN2P37802 199 aaKnown RBP11.3□□□□□ -0.6
VPS4A-204ENST00000566354 TNFSF10P50591 281 aa11.3□□□□□ -0.6
VPS4A-204ENST00000566354 DYNLT3P51808 116 aa11.3□□□□□ -0.6
VPS4A-204ENST00000566354 UBE2KP61086 200 aa11.3□□□□□ -0.6
VPS4A-204ENST00000566354 TLE4Q04727 773 aa11.3□□□□□ -0.6
VPS4A-204ENST00000566354 KIAA0141Q14154 515 aaPredicted RBP11.3□□□□□ -0.6
VPS4A-204ENST00000566354 ZNF506Q5JVG8 444 aa11.3□□□□□ -0.6
VPS4A-204ENST00000566354 GAPTQ8N292 157 aa11.3□□□□□ -0.6
VPS4A-204ENST00000566354 TTTY12Q9BZ98 90 aa11.3□□□□□ -0.6
VPS4A-204ENST00000566354 PRDM14Q9GZV8 571 aa11.3□□□□□ -0.6
VPS4A-204ENST00000566354 TOLLIPQ9H0E2 274 aa11.3□□□□□ -0.6
VPS4A-204ENST00000566354 ZNF703Q9H7S9 590 aaPredicted RBP11.3□□□□□ -0.6
VPS4A-204ENST00000566354 GOLT1BQ9Y3E0 138 aa11.3□□□□□ -0.6
VPS4A-204ENST00000566354 A0A1W2PN81 502 aa11.3□□□□□ -0.6
VPS4A-204ENST00000566354 CXCL13O43927 109 aa11.3□□□□□ -0.6
VPS4A-204ENST00000566354 CEACAM4O75871 244 aa11.3□□□□□ -0.6
VPS4A-204ENST00000566354 CST7O76096 145 aa11.3□□□□□ -0.6
VPS4A-204ENST00000566354 CTXN2P0C2S0 81 aa11.3□□□□□ -0.6
VPS4A-204ENST00000566354 CHRNA7P36544 502 aa11.3□□□□□ -0.6
VPS4A-204ENST00000566354 MEOX1P50221 254 aa11.3□□□□□ -0.6
VPS4A-204ENST00000566354 TNFRSF9Q07011 255 aa11.3□□□□□ -0.6
VPS4A-204ENST00000566354 HAGHQ16775 308 aa11.3□□□□□ -0.6
VPS4A-204ENST00000566354 ZNF766Q5HY98 468 aa11.3□□□□□ -0.6
VPS4A-204ENST00000566354 AKR1C8PQ5T2L2 129 aa11.3□□□□□ -0.6
VPS4A-204ENST00000566354 SLC25A24Q6NUK1 477 aa11.3□□□□□ -0.6
VPS4A-204ENST00000566354 IGFL2Q6UWQ7 119 aa11.3□□□□□ -0.6
VPS4A-204ENST00000566354 PNPLA5Q7Z6Z6 429 aaPredicted RBP11.3□□□□□ -0.6
VPS4A-204ENST00000566354 ZNF429Q86V71 674 aa11.3□□□□□ -0.6
VPS4A-204ENST00000566354 SAXO1Q8IYX7 474 aa11.3□□□□□ -0.6
VPS4A-204ENST00000566354 OR5T1Q8NG75 326 aa11.3□□□□□ -0.6
VPS4A-204ENST00000566354 KLF13Q9Y2Y9 288 aaPredicted RBP11.3□□□□□ -0.6
VPS4A-204ENST00000566354 LIPGQ9Y5X9 500 aa11.3□□□□□ -0.6
VPS4A-204ENST00000566354 KIR2DS1A0A191URI9 304 aa11.29□□□□□ -0.6
VPS4A-204ENST00000566354 SLC22A20A6NK97 555 aa11.29□□□□□ -0.6
VPS4A-204ENST00000566354 ZNF587BE7ETH6 402 aa11.29□□□□□ -0.6
VPS4A-204ENST00000566354 TUSC2O75896 110 aa11.29□□□□□ -0.6
VPS4A-204ENST00000566354 SCAF4O95104 1147 aaKnown RBP11.29□□□□□ -0.6
VPS4A-204ENST00000566354 TMEM50AO95807 157 aa11.29□□□□□ -0.6
VPS4A-204ENST00000566354 HBE1P02100 147 aa11.29□□□□□ -0.6
VPS4A-204ENST00000566354 MMP7P09237 267 aaPredicted RBP11.29□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms