RNA–Protein interactions for RNA: ENST00000566083.6

CLN3-222, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,409 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-222ENST00000566083 IGHV3-43DP0DP04 118 aa11.73□□□□□ -0.53
CLN3-222ENST00000566083 CELP19835 753 aa11.73□□□□□ -0.53
CLN3-222ENST00000566083 WNT4P56705 351 aa11.73□□□□□ -0.53
CLN3-222ENST00000566083 ADARB1P78563 741 aaKnown RBP11.73□□□□□ -0.53
CLN3-222ENST00000566083 KIR2DS1Q14954 304 aa11.73□□□□□ -0.53
CLN3-222ENST00000566083 LRRC36Q1X8D7 754 aa11.73□□□□□ -0.53
CLN3-222ENST00000566083 FAM71E2Q8N5Q1 922 aa11.73□□□□□ -0.53
CLN3-222ENST00000566083 ZNF439Q8NDP4 499 aa11.73□□□□□ -0.53
CLN3-222ENST00000566083 OR4K15Q8NH41 348 aa11.73□□□□□ -0.53
CLN3-222ENST00000566083 DERL3Q96Q80 235 aa11.73□□□□□ -0.53
CLN3-222ENST00000566083 DCLRE1BQ9H816 532 aa11.73□□□□□ -0.53
CLN3-222ENST00000566083 OR2S2Q9NQN1 319 aa11.73□□□□□ -0.53
CLN3-222ENST00000566083 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP11.73□□□□□ -0.53
CLN3-222ENST00000566083 PLSCR3Q9NRY6 295 aa11.73□□□□□ -0.53
CLN3-222ENST00000566083 PLCXD1Q9NUJ7 323 aa11.73□□□□□ -0.53
CLN3-222ENST00000566083 MBNL3Q9NUK0 354 aaKnown RBP11.73□□□□□ -0.53
CLN3-222ENST00000566083 JPT1Q9UK76 154 aa11.73□□□□□ -0.53
CLN3-222ENST00000566083 ERGIC3Q9Y282 383 aa11.73□□□□□ -0.53
CLN3-222ENST00000566083 WI2-2373I1.2A0A1W2PRP0 233 aa11.72□□□□□ -0.53
CLN3-222ENST00000566083 MAGEA13PA6NCF6 341 aa11.72□□□□□ -0.53
CLN3-222ENST00000566083 ERICH4A6NGS2 130 aa11.72□□□□□ -0.53
CLN3-222ENST00000566083 IGF1P05019 195 aa11.72□□□□□ -0.53
CLN3-222ENST00000566083 HOXD3P31249 432 aaPredicted RBP11.72□□□□□ -0.53
CLN3-222ENST00000566083 HTD2P86397 168 aa11.72□□□□□ -0.53
CLN3-222ENST00000566083 DGCR2P98153 550 aa11.72□□□□□ -0.53
CLN3-222ENST00000566083 CD69Q07108 199 aa11.72□□□□□ -0.53
CLN3-222ENST00000566083 CT45A1Q5HYN5 189 aa11.72□□□□□ -0.53
CLN3-222ENST00000566083 LY6G6FQ5SQ64 297 aa11.72□□□□□ -0.53
CLN3-222ENST00000566083 PRR18Q8N4B5 295 aa11.72□□□□□ -0.53
CLN3-222ENST00000566083 MS4A15Q8N5U1 240 aa11.72□□□□□ -0.53
CLN3-222ENST00000566083 ZFP41Q8N8Y5 198 aa11.72□□□□□ -0.53
CLN3-222ENST00000566083 OR5M8Q8NGP6 311 aa11.72□□□□□ -0.53
CLN3-222ENST00000566083 CT45A3Q8NHU0 189 aa11.72□□□□□ -0.53
CLN3-222ENST00000566083 UBALD1Q8TB05 177 aa11.72□□□□□ -0.53
CLN3-222ENST00000566083 Q96M66 194 aa11.72□□□□□ -0.53
CLN3-222ENST00000566083 TAF9BQ9HBM6 251 aa11.72□□□□□ -0.53
CLN3-222ENST00000566083 A0A1W2PPK0 400 aa11.71□□□□□ -0.53
CLN3-222ENST00000566083 LINC01548A6NM66 108 aa11.71□□□□□ -0.53
CLN3-222ENST00000566083 PDCD6O75340 191 aa11.71□□□□□ -0.53
CLN3-222ENST00000566083 IGHG4P01861 327 aa11.71□□□□□ -0.53
CLN3-222ENST00000566083 ZNF134P52741 427 aa11.71□□□□□ -0.53
CLN3-222ENST00000566083 MORN2Q502X0 79 aa11.71□□□□□ -0.53
CLN3-222ENST00000566083 OR10V1Q8NGI7 309 aa11.71□□□□□ -0.53
CLN3-222ENST00000566083 GALMQ96C23 342 aa11.71□□□□□ -0.53
CLN3-222ENST00000566083 NEDD4LQ96PU5 975 aa11.71□□□□□ -0.53
CLN3-222ENST00000566083 B9D2Q9BPU9 175 aa11.71□□□□□ -0.53
CLN3-222ENST00000566083 VCXQ9H320 206 aa11.71□□□□□ -0.53
CLN3-222ENST00000566083 BANF2Q9H503 90 aa11.71□□□□□ -0.53
CLN3-222ENST00000566083 PSORS1C1Q9UIG5 152 aa11.71□□□□□ -0.53
CLN3-222ENST00000566083 DNAH3Q8TD57 4116 aa11.7□□□□□ -0.54
CLN3-222ENST00000566083 SLC31A2O15432 143 aa11.7□□□□□ -0.54
CLN3-222ENST00000566083 YPEL1O60688 119 aa11.7□□□□□ -0.54
CLN3-222ENST00000566083 RPLP1P05386 114 aaKnown RBP11.7□□□□□ -0.54
CLN3-222ENST00000566083 RCC1P18754 421 aaPredicted RBP11.7□□□□□ -0.54
CLN3-222ENST00000566083 LSAMPQ13449 338 aa11.7□□□□□ -0.54
CLN3-222ENST00000566083 MMDQ15546 238 aa11.7□□□□□ -0.54
CLN3-222ENST00000566083 C9orf66Q5T8R8 295 aa11.7□□□□□ -0.54
CLN3-222ENST00000566083 GLT8D1Q68CQ7 371 aa11.7□□□□□ -0.54
CLN3-222ENST00000566083 C18orf65Q6ZTR6 163 aa11.7□□□□□ -0.54
CLN3-222ENST00000566083 LYPD6Q86Y78 171 aa11.7□□□□□ -0.54
CLN3-222ENST00000566083 OR1L1Q8NH94 360 aa11.7□□□□□ -0.54
CLN3-222ENST00000566083 C4orf3Q8WVX3 66 aa11.7□□□□□ -0.54
CLN3-222ENST00000566083 TFAP2CQ92754 450 aa11.7□□□□□ -0.54
CLN3-222ENST00000566083 RAX2Q96IS3 184 aa11.7□□□□□ -0.54
CLN3-222ENST00000566083 YPEL2Q96QA6 119 aa11.7□□□□□ -0.54
CLN3-222ENST00000566083 ABHD14AQ9BUJ0 271 aa11.7□□□□□ -0.54
CLN3-222ENST00000566083 ABRACLQ9P1F3 81 aa11.7□□□□□ -0.54
CLN3-222ENST00000566083 ZNF107Q9UII5 783 aaPredicted RBP11.7□□□□□ -0.54
CLN3-222ENST00000566083 PNMA8CA0A1B0GUJ8 204 aa11.69□□□□□ -0.54
CLN3-222ENST00000566083 UBE2QL1A1L167 161 aa11.69□□□□□ -0.54
CLN3-222ENST00000566083 VHLP40337 213 aa11.69□□□□□ -0.54
CLN3-222ENST00000566083 RANBP1P43487 201 aa11.69□□□□□ -0.54
CLN3-222ENST00000566083 RAB25P57735 213 aa11.69□□□□□ -0.54
CLN3-222ENST00000566083 RNLSQ5VYX0 342 aa11.69□□□□□ -0.54
CLN3-222ENST00000566083 TMEM65Q6PI78 240 aa11.69□□□□□ -0.54
CLN3-222ENST00000566083 LCNL1Q6ZST4 164 aa11.69□□□□□ -0.54
CLN3-222ENST00000566083 AHSA2Q719I0 299 aa11.69□□□□□ -0.54
CLN3-222ENST00000566083 NANOGP1Q8N7R0 232 aa11.69□□□□□ -0.54
CLN3-222ENST00000566083 PHYHIPQ92561 330 aa11.69□□□□□ -0.54
CLN3-222ENST00000566083 ZNF251Q9BRH9 671 aa11.69□□□□□ -0.54
CLN3-222ENST00000566083 GHITMQ9H3K2 345 aa11.69□□□□□ -0.54
CLN3-222ENST00000566083 STEAP1Q9UHE8 339 aa11.69□□□□□ -0.54
CLN3-222ENST00000566083 ZNF736B4DX44 427 aaPredicted RBP11.69□□□□□ -0.54
CLN3-222ENST00000566083 NHLRC4P0CG21 123 aaPredicted RBP11.69□□□□□ -0.54
CLN3-222ENST00000566083 PSMB8P28062 276 aa11.69□□□□□ -0.54
CLN3-222ENST00000566083 F2RL1P55085 397 aa11.69□□□□□ -0.54
CLN3-222ENST00000566083 CFHR3Q02985 330 aa11.69□□□□□ -0.54
CLN3-222ENST00000566083 SIGIRRQ6IA17 410 aa11.69□□□□□ -0.54
CLN3-222ENST00000566083 FAM71F2Q6NXP2 309 aa11.69□□□□□ -0.54
CLN3-222ENST00000566083 OR2AK2Q8NG84 335 aa11.69□□□□□ -0.54
CLN3-222ENST00000566083 KCNG3Q8TAE7 436 aa11.69□□□□□ -0.54
CLN3-222ENST00000566083 FBLIM1Q8WUP2 373 aa11.69□□□□□ -0.54
CLN3-222ENST00000566083 KCTD7Q96MP8 289 aa11.69□□□□□ -0.54
CLN3-222ENST00000566083 MND1Q9BWT6 205 aa11.69□□□□□ -0.54
CLN3-222ENST00000566083 RIMS4Q9H426 269 aaPredicted RBP11.69□□□□□ -0.54
CLN3-222ENST00000566083 SORL1Q92673 2214 aa11.68□□□□□ -0.54
CLN3-222ENST00000566083 HLA-DRB1P01911 266 aa11.68□□□□□ -0.54
CLN3-222ENST00000566083 INSL3P51460 131 aa11.68□□□□□ -0.54
CLN3-222ENST00000566083 ACTBP60709 375 aa11.68□□□□□ -0.54
CLN3-222ENST00000566083 RCN1Q15293 331 aa11.68□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms