RNA–Protein interactions for RNA: ENST00000565778.6

CLN3-219, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-219ENST00000565778 HTR2CP28335 458 aa16.43■□□□□ 0.22
CLN3-219ENST00000565778 CD1BP29016 333 aa16.43■□□□□ 0.22
CLN3-219ENST00000565778 ZNF329Q86UD4 541 aa16.43■□□□□ 0.22
CLN3-219ENST00000565778 TGIF2LXQ8IUE1 241 aa16.43■□□□□ 0.22
CLN3-219ENST00000565778 KCNG3Q8TAE7 436 aa16.43■□□□□ 0.22
CLN3-219ENST00000565778 CHPT1Q8WUD6 406 aa16.43■□□□□ 0.22
CLN3-219ENST00000565778 NOL4LQ96MY1 436 aaPredicted RBP16.43■□□□□ 0.22
CLN3-219ENST00000565778 FAAP24Q9BTP7 215 aa16.43■□□□□ 0.22
CLN3-219ENST00000565778 TMEM59Q9BXS4 323 aa16.43■□□□□ 0.22
CLN3-219ENST00000565778 MBNL3Q9NUK0 354 aaKnown RBP16.43■□□□□ 0.22
CLN3-219ENST00000565778 PF4P02776 101 aa16.42■□□□□ 0.22
CLN3-219ENST00000565778 PRB2P02812 416 aaPredicted RBP16.42■□□□□ 0.22
CLN3-219ENST00000565778 RPS27AP62979 156 aaKnown RBP16.42■□□□□ 0.22
CLN3-219ENST00000565778 TPBGQ13641 420 aa16.42■□□□□ 0.22
CLN3-219ENST00000565778 MORN2Q502X0 79 aa16.42■□□□□ 0.22
CLN3-219ENST00000565778 STEAP3Q658P3 488 aa16.42■□□□□ 0.22
CLN3-219ENST00000565778 C5orf24Q7Z6I8 188 aa16.42■□□□□ 0.22
CLN3-219ENST00000565778 SLC35E3Q7Z769 313 aa16.42■□□□□ 0.22
CLN3-219ENST00000565778 ZNF439Q8NDP4 499 aa16.42■□□□□ 0.22
CLN3-219ENST00000565778 OR52L2PQ8NGH6 319 aa16.42■□□□□ 0.22
CLN3-219ENST00000565778 MRPL30Q8TCC3 161 aaKnown RBP16.42■□□□□ 0.22
CLN3-219ENST00000565778 ANKRD60Q9BZ19 345 aa16.42■□□□□ 0.22
CLN3-219ENST00000565778 ISYNA1Q9NPH2 558 aa16.42■□□□□ 0.22
CLN3-219ENST00000565778 LINC00527Q9UJ94 153 aa16.42■□□□□ 0.22
CLN3-219ENST00000565778 PLXNB1O43157 2135 aa16.41■□□□□ 0.22
CLN3-219ENST00000565778 MOSP00540 346 aa16.41■□□□□ 0.22
CLN3-219ENST00000565778 CHATP28329 748 aa16.41■□□□□ 0.22
CLN3-219ENST00000565778 TRAM1Q15629 374 aa16.41■□□□□ 0.22
CLN3-219ENST00000565778 KPRPQ5T749 579 aaPredicted RBP16.41■□□□□ 0.22
CLN3-219ENST00000565778 C6orf201Q7Z4U5 140 aa16.41■□□□□ 0.22
CLN3-219ENST00000565778 ZNF554Q86TJ5 538 aa16.41■□□□□ 0.22
CLN3-219ENST00000565778 IZUMO1Q8IYV9 350 aa16.41■□□□□ 0.22
CLN3-219ENST00000565778 WFDC9Q8NEX5 89 aa16.41■□□□□ 0.22
CLN3-219ENST00000565778 GALMQ96C23 342 aa16.41■□□□□ 0.22
CLN3-219ENST00000565778 SULT4A1Q9BR01 284 aa16.41■□□□□ 0.22
CLN3-219ENST00000565778 LRRC42Q9Y546 428 aa16.41■□□□□ 0.22
CLN3-219ENST00000565778 ERICH4A6NGS2 130 aa16.4■□□□□ 0.22
CLN3-219ENST00000565778 ZNF736B4DX44 427 aaPredicted RBP16.4■□□□□ 0.22
CLN3-219ENST00000565778 SLC22A1O15245 554 aa16.4■□□□□ 0.22
CLN3-219ENST00000565778 TXNL1O43396 289 aa16.4■□□□□ 0.22
CLN3-219ENST00000565778 IGHG2P01859 326 aa16.4■□□□□ 0.22
CLN3-219ENST00000565778 CRHBPP24387 322 aa16.4■□□□□ 0.22
CLN3-219ENST00000565778 BLVRBP30043 206 aaPredicted RBP16.4■□□□□ 0.22
CLN3-219ENST00000565778 RPS25P62851 125 aaKnown RBP16.4■□□□□ 0.22
CLN3-219ENST00000565778 TMEM91Q6ZNR0 172 aa16.4■□□□□ 0.22
CLN3-219ENST00000565778 FOXRED2Q8IWF2 684 aa16.4■□□□□ 0.22
CLN3-219ENST00000565778 Q8N6K4 173 aa16.4■□□□□ 0.22
CLN3-219ENST00000565778 OR6M1Q8NGM8 313 aa16.4■□□□□ 0.22
CLN3-219ENST00000565778 RASL11BQ9BPW5 248 aa16.4■□□□□ 0.22
CLN3-219ENST00000565778 KCNK15Q9H427 330 aa16.4■□□□□ 0.22
CLN3-219ENST00000565778 PLGRKTQ9HBL7 147 aa16.4■□□□□ 0.22
CLN3-219ENST00000565778 PLEKHJ1Q9NW61 149 aa16.4■□□□□ 0.22
CLN3-219ENST00000565778 LINC01548A6NM66 108 aa16.39■□□□□ 0.21
CLN3-219ENST00000565778 ARL6IP5O75915 188 aa16.39■□□□□ 0.21
CLN3-219ENST00000565778 CD37P11049 281 aa16.39■□□□□ 0.21
CLN3-219ENST00000565778 CPEP16870 476 aa16.39■□□□□ 0.21
CLN3-219ENST00000565778 PPP1CCP36873 323 aaKnown RBP16.39■□□□□ 0.21
CLN3-219ENST00000565778 ZNF137PP52743 207 aa16.39■□□□□ 0.21
CLN3-219ENST00000565778 SLC35B1P78383 322 aa16.39■□□□□ 0.21
CLN3-219ENST00000565778 HTD2P86397 168 aa16.39■□□□□ 0.21
CLN3-219ENST00000565778 MLLT11Q13015 90 aaPredicted RBP16.39■□□□□ 0.21
CLN3-219ENST00000565778 UNC119Q13432 240 aa16.39■□□□□ 0.21
CLN3-219ENST00000565778 GNMTQ14749 295 aa16.39■□□□□ 0.21
CLN3-219ENST00000565778 P2RY14Q15391 338 aa16.39■□□□□ 0.21
CLN3-219ENST00000565778 IZUMO2Q6UXV1 221 aa16.39■□□□□ 0.21
CLN3-219ENST00000565778 PRSS48Q7RTY5 328 aa16.39■□□□□ 0.21
CLN3-219ENST00000565778 Q8N9W7 124 aa16.39■□□□□ 0.21
CLN3-219ENST00000565778 CNBD2Q96M20 576 aa16.39■□□□□ 0.21
CLN3-219ENST00000565778 MGLLQ99685 303 aa16.39■□□□□ 0.21
CLN3-219ENST00000565778 NICN1Q9BSH3 213 aa16.39■□□□□ 0.21
CLN3-219ENST00000565778 TM2D1Q9BX74 207 aa16.39■□□□□ 0.21
CLN3-219ENST00000565778 CHMP1AQ9HD42 196 aaPredicted RBP16.39■□□□□ 0.21
CLN3-219ENST00000565778 ABRACLQ9P1F3 81 aa16.39■□□□□ 0.21
CLN3-219ENST00000565778 JPT1Q9UK76 154 aa16.39■□□□□ 0.21
CLN3-219ENST00000565778 AK6Q9Y3D8 172 aaKnown RBP16.39■□□□□ 0.21
CLN3-219ENST00000565778 TMEM14DPA8MWL7 114 aa16.38■□□□□ 0.21
CLN3-219ENST00000565778 RGS11O94810 467 aa16.38■□□□□ 0.21
CLN3-219ENST00000565778 BPNT1O95861 308 aa16.38■□□□□ 0.21
CLN3-219ENST00000565778 IGLL1P15814 213 aa16.38■□□□□ 0.21
CLN3-219ENST00000565778 ARSBP15848 533 aa16.38■□□□□ 0.21
CLN3-219ENST00000565778 PSMA1P25786 263 aaKnown RBP16.38■□□□□ 0.21
CLN3-219ENST00000565778 MAP2K4P45985 399 aa16.38■□□□□ 0.21
CLN3-219ENST00000565778 HSPA13P48723 471 aa16.38■□□□□ 0.21
CLN3-219ENST00000565778 QRFPP83859 136 aa16.38■□□□□ 0.21
CLN3-219ENST00000565778 SETD6Q8TBK2 473 aa16.38■□□□□ 0.21
CLN3-219ENST00000565778 URM1Q9BTM9 101 aaKnown RBP16.38■□□□□ 0.21
CLN3-219ENST00000565778 ABCG5Q9H222 651 aa16.38■□□□□ 0.21
CLN3-219ENST00000565778 PLSCR3Q9NRY6 295 aa16.38■□□□□ 0.21
CLN3-219ENST00000565778 LIN7CQ9NUP9 197 aaKnown RBP16.38■□□□□ 0.21
CLN3-219ENST00000565778 LANCL1O43813 399 aa16.37■□□□□ 0.21
CLN3-219ENST00000565778 YPEL1O60688 119 aa16.37■□□□□ 0.21
CLN3-219ENST00000565778 REC114Q7Z4M0 266 aa16.37■□□□□ 0.21
CLN3-219ENST00000565778 STPG2Q8N412 459 aa16.37■□□□□ 0.21
CLN3-219ENST00000565778 OR8H1Q8NGG4 311 aa16.37■□□□□ 0.21
CLN3-219ENST00000565778 IL1F10Q8WWZ1 152 aa16.37■□□□□ 0.21
CLN3-219ENST00000565778 PHF21AQ96BD5 680 aa16.37■□□□□ 0.21
CLN3-219ENST00000565778 RBMXL1Q96E39 390 aaKnown RBP16.37■□□□□ 0.21
CLN3-219ENST00000565778 YPEL2Q96QA6 119 aa16.37■□□□□ 0.21
CLN3-219ENST00000565778 S1PR3Q99500 378 aa16.37■□□□□ 0.21
CLN3-219ENST00000565778 ABHD14AQ9BUJ0 271 aa16.37■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms