RNA–Protein interactions for RNA: ENST00000565354.5

CLN3-217, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 759 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-217ENST00000565354 KCTD12Q96CX2 325 aaKnown RBP13.97□□□□□ -0.17
CLN3-217ENST00000565354 MALSU1Q96EH3 234 aa13.97□□□□□ -0.17
CLN3-217ENST00000565354 PRDM13Q9H4Q3 707 aa13.97□□□□□ -0.17
CLN3-217ENST00000565354 DIABLOQ9NR28 239 aa13.97□□□□□ -0.17
CLN3-217ENST00000565354 ABCB10Q9NRK6 738 aa13.97□□□□□ -0.17
CLN3-217ENST00000565354 CCDC160A6NGH7 325 aa13.96□□□□□ -0.17
CLN3-217ENST00000565354 LEUTXA8MZ59 168 aa13.96□□□□□ -0.17
CLN3-217ENST00000565354 J3QR06 171 aa13.96□□□□□ -0.17
CLN3-217ENST00000565354 F2RL2O00254 374 aa13.96□□□□□ -0.17
CLN3-217ENST00000565354 MFNGO00587 321 aa13.96□□□□□ -0.17
CLN3-217ENST00000565354 TMBIM6P55061 237 aa13.96□□□□□ -0.17
CLN3-217ENST00000565354 SLC9A3R2Q15599 337 aa13.96□□□□□ -0.17
CLN3-217ENST00000565354 SSX2Q16385 188 aa13.96□□□□□ -0.17
CLN3-217ENST00000565354 LRRC75BQ2VPJ9 315 aa13.96□□□□□ -0.17
CLN3-217ENST00000565354 HLA-DRB5Q30154 266 aa13.96□□□□□ -0.17
CLN3-217ENST00000565354 UBE2NLQ5JXB2 153 aa13.96□□□□□ -0.17
CLN3-217ENST00000565354 TMEM86BQ8N661 226 aa13.96□□□□□ -0.17
CLN3-217ENST00000565354 SAMD12Q8N8I0 201 aa13.96□□□□□ -0.17
CLN3-217ENST00000565354 OR10V1Q8NGI7 309 aa13.96□□□□□ -0.17
CLN3-217ENST00000565354 OR4P4Q8NGL7 312 aa13.96□□□□□ -0.17
CLN3-217ENST00000565354 OR10X1Q8NGY0 326 aa13.96□□□□□ -0.17
CLN3-217ENST00000565354 IL1F10Q8WWZ1 152 aa13.96□□□□□ -0.17
CLN3-217ENST00000565354 AP3S1Q92572 193 aa13.96□□□□□ -0.17
CLN3-217ENST00000565354 BCL7BQ9BQE9 202 aa13.96□□□□□ -0.17
CLN3-217ENST00000565354 MMP28Q9H239 520 aa13.96□□□□□ -0.17
CLN3-217ENST00000565354 OR2S2Q9NQN1 319 aa13.96□□□□□ -0.17
CLN3-217ENST00000565354 DPM3Q9P2X0 92 aa13.96□□□□□ -0.17
CLN3-217ENST00000565354 COMMD3Q9UBI1 195 aa13.96□□□□□ -0.17
CLN3-217ENST00000565354 PSG11Q9UQ72 335 aa13.96□□□□□ -0.17
CLN3-217ENST00000565354 HILPDAQ9Y5L2 63 aa13.96□□□□□ -0.17
CLN3-217ENST00000565354 POMT1Q9Y6A1 747 aa13.96□□□□□ -0.17
CLN3-217ENST00000565354 TRBV6-6A0A0A6YYG2 114 aa13.95□□□□□ -0.18
CLN3-217ENST00000565354 GSTP1P09211 210 aaKnown RBP13.95□□□□□ -0.18
CLN3-217ENST00000565354 PAX6P26367 422 aa13.95□□□□□ -0.18
CLN3-217ENST00000565354 SOX6P35712 828 aa13.95□□□□□ -0.18
CLN3-217ENST00000565354 IER3P46695 156 aa13.95□□□□□ -0.18
CLN3-217ENST00000565354 ARHGDIBP52566 201 aa13.95□□□□□ -0.18
CLN3-217ENST00000565354 GNG2P59768 71 aa13.95□□□□□ -0.18
CLN3-217ENST00000565354 HLA-DRB3P79483 266 aa13.95□□□□□ -0.18
CLN3-217ENST00000565354 HMGN3Q15651 99 aa13.95□□□□□ -0.18
CLN3-217ENST00000565354 MZT2AQ6P582 158 aa13.95□□□□□ -0.18
CLN3-217ENST00000565354 ZNF880Q6PDB4 577 aa13.95□□□□□ -0.18
CLN3-217ENST00000565354 ACOT12Q8WYK0 555 aa13.95□□□□□ -0.18
CLN3-217ENST00000565354 SLC25A38Q96DW6 304 aa13.95□□□□□ -0.18
CLN3-217ENST00000565354 S100A16Q96FQ6 103 aaKnown RBP13.95□□□□□ -0.18
CLN3-217ENST00000565354 SSX3Q99909 188 aa13.95□□□□□ -0.18
CLN3-217ENST00000565354 MEGF9Q9H1U4 602 aa13.95□□□□□ -0.18
CLN3-217ENST00000565354 Q9N2K0 584 aa13.95□□□□□ -0.18
CLN3-217ENST00000565354 KCNK7Q9Y2U2 307 aa13.95□□□□□ -0.18
CLN3-217ENST00000565354 TRAV18A0A075B6X5 111 aa13.94□□□□□ -0.18
CLN3-217ENST00000565354 A0A0A6YYH2 397 aa13.94□□□□□ -0.18
CLN3-217ENST00000565354 A0A1W2PPE3 182 aa13.94□□□□□ -0.18
CLN3-217ENST00000565354 A6NJ64 397 aa13.94□□□□□ -0.18
CLN3-217ENST00000565354 BUB1B-PAK6H3BSN5 160 aa13.94□□□□□ -0.18
CLN3-217ENST00000565354 CLDN34H7C241 214 aa13.94□□□□□ -0.18
CLN3-217ENST00000565354 RGS11O94810 467 aa13.94□□□□□ -0.18
CLN3-217ENST00000565354 IGLV1-47P01700 117 aa13.94□□□□□ -0.18
CLN3-217ENST00000565354 IGHV4-59P01825 116 aa13.94□□□□□ -0.18
CLN3-217ENST00000565354 IL3RAP26951 378 aa13.94□□□□□ -0.18
CLN3-217ENST00000565354 IZUMO1Q8IYV9 350 aa13.94□□□□□ -0.18
CLN3-217ENST00000565354 OR5R1Q8NH85 324 aa13.94□□□□□ -0.18
CLN3-217ENST00000565354 TAF15Q92804 592 aaKnown RBP eCLIP13.94□□□□□ -0.18
CLN3-217ENST00000565354 RPEQ96AT9 228 aa13.94□□□□□ -0.18
CLN3-217ENST00000565354 JPT1Q9UK76 154 aa13.94□□□□□ -0.18
CLN3-217ENST00000565354 TMEM235A6NFC5 223 aa13.93□□□□□ -0.18
CLN3-217ENST00000565354 H3BUX3 64 aa13.93□□□□□ -0.18
CLN3-217ENST00000565354 HSPA12AO43301 675 aa13.93□□□□□ -0.18
CLN3-217ENST00000565354 CRYBA1P05813 215 aa13.93□□□□□ -0.18
CLN3-217ENST00000565354 FCGR3AP08637 254 aa13.93□□□□□ -0.18
CLN3-217ENST00000565354 ZNF182P17025 639 aaPredicted RBP13.93□□□□□ -0.18
CLN3-217ENST00000565354 MDKP21741 143 aaPredicted RBP13.93□□□□□ -0.18
CLN3-217ENST00000565354 MNDAP41218 407 aa13.93□□□□□ -0.18
CLN3-217ENST00000565354 LOXL3P58215 753 aa13.93□□□□□ -0.18
CLN3-217ENST00000565354 HTD2P86397 168 aa13.93□□□□□ -0.18
CLN3-217ENST00000565354 PITPNAQ00169 270 aa13.93□□□□□ -0.18
CLN3-217ENST00000565354 Q3ZCU0 254 aa13.93□□□□□ -0.18
CLN3-217ENST00000565354 UTF1Q5T230 341 aa13.93□□□□□ -0.18
CLN3-217ENST00000565354 HACD4Q5VWC8 232 aa13.93□□□□□ -0.18
CLN3-217ENST00000565354 STEAP3Q658P3 488 aa13.93□□□□□ -0.18
CLN3-217ENST00000565354 C5orf24Q7Z6I8 188 aa13.93□□□□□ -0.18
CLN3-217ENST00000565354 OR52L2PQ8NGH6 319 aa13.93□□□□□ -0.18
CLN3-217ENST00000565354 TOMM40LQ969M1 308 aa13.93□□□□□ -0.18
CLN3-217ENST00000565354 TRDCB7Z8K6 153 aa13.92□□□□□ -0.18
CLN3-217ENST00000565354 KIR2DS4P43632 304 aa13.92□□□□□ -0.18
CLN3-217ENST00000565354 MADCAM1Q13477 382 aa13.92□□□□□ -0.18
CLN3-217ENST00000565354 KIR2DS1Q14954 304 aa13.92□□□□□ -0.18
CLN3-217ENST00000565354 SPCS2Q15005 226 aa13.92□□□□□ -0.18
CLN3-217ENST00000565354 PNLIPRP3Q17RR3 467 aa13.92□□□□□ -0.18
CLN3-217ENST00000565354 ZNF260Q3ZCT1 412 aa13.92□□□□□ -0.18
CLN3-217ENST00000565354 TPTE2P1Q5T6R2 138 aa13.92□□□□□ -0.18
CLN3-217ENST00000565354 CCDC144NLQ6NUI1 221 aa13.92□□□□□ -0.18
CLN3-217ENST00000565354 C16orf87Q6PH81 154 aa13.92□□□□□ -0.18
CLN3-217ENST00000565354 DYNAPQ8N1N2 210 aa13.92□□□□□ -0.18
CLN3-217ENST00000565354 ISOC1Q96CN7 298 aa13.92□□□□□ -0.18
CLN3-217ENST00000565354 AJUBAQ96IF1 538 aa13.92□□□□□ -0.18
CLN3-217ENST00000565354 CHIAQ9BZP6 476 aa13.92□□□□□ -0.18
CLN3-217ENST00000565354 ABCG5Q9H222 651 aa13.92□□□□□ -0.18
CLN3-217ENST00000565354 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP13.92□□□□□ -0.18
CLN3-217ENST00000565354 SLC23A1Q9UHI7 598 aa13.92□□□□□ -0.18
CLN3-217ENST00000565354 MMP24Q9Y5R2 645 aa13.92□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms