RNA–Protein interactions for RNA: ENST00000562754.1

VPS4A-202, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 2

Gene VPS4A, Length 633 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-202ENST00000562754 RAB9BQ9NP90 201 aa13.57□□□□□ -0.24
VPS4A-202ENST00000562754 ABCB10Q9NRK6 738 aa13.57□□□□□ -0.24
VPS4A-202ENST00000562754 SLC23A1Q9UHI7 598 aa13.57□□□□□ -0.24
VPS4A-202ENST00000562754 ZNF469Q96JG9 3925 aaPredicted RBP13.56□□□□□ -0.24
VPS4A-202ENST00000562754 UPK1BO75841 260 aa13.56□□□□□ -0.24
VPS4A-202ENST00000562754 TOX4O94842 621 aa13.56□□□□□ -0.24
VPS4A-202ENST00000562754 DIRAS3O95661 229 aa13.56□□□□□ -0.24
VPS4A-202ENST00000562754 GATA3P23771 443 aa13.56□□□□□ -0.24
VPS4A-202ENST00000562754 PRTN3P24158 256 aa13.56□□□□□ -0.24
VPS4A-202ENST00000562754 PPP1CCP36873 323 aaKnown RBP13.56□□□□□ -0.24
VPS4A-202ENST00000562754 RFX2P48378 723 aa13.56□□□□□ -0.24
VPS4A-202ENST00000562754 IFITM3Q01628 133 aa13.56□□□□□ -0.24
VPS4A-202ENST00000562754 KLRD1Q13241 179 aa13.56□□□□□ -0.24
VPS4A-202ENST00000562754 TMEM30BQ3MIR4 351 aa13.56□□□□□ -0.24
VPS4A-202ENST00000562754 ACTBL2Q562R1 376 aa13.56□□□□□ -0.24
VPS4A-202ENST00000562754 STEAP3Q658P3 488 aa13.56□□□□□ -0.24
VPS4A-202ENST00000562754 HCP5Q6MZN7 132 aa13.56□□□□□ -0.24
VPS4A-202ENST00000562754 FAAP20Q6NZ36 180 aa13.56□□□□□ -0.24
VPS4A-202ENST00000562754 STEAP1BQ6NZ63 245 aa13.56□□□□□ -0.24
VPS4A-202ENST00000562754 OR52M1Q8NGK5 317 aa13.56□□□□□ -0.24
VPS4A-202ENST00000562754 OR4C16Q8NGL9 310 aa13.56□□□□□ -0.24
VPS4A-202ENST00000562754 LEAP2Q969E1 77 aa13.56□□□□□ -0.24
VPS4A-202ENST00000562754 PCGF1Q9BSM1 259 aa13.56□□□□□ -0.24
VPS4A-202ENST00000562754 TMUB1Q9BVT8 246 aa13.56□□□□□ -0.24
VPS4A-202ENST00000562754 OR2S2Q9NQN1 319 aa13.56□□□□□ -0.24
VPS4A-202ENST00000562754 TAS2R8Q9NYW2 309 aa13.56□□□□□ -0.24
VPS4A-202ENST00000562754 EHFQ9NZC4 300 aa13.56□□□□□ -0.24
VPS4A-202ENST00000562754 GNG12Q9UBI6 72 aa13.56□□□□□ -0.24
VPS4A-202ENST00000562754 JPT1Q9UK76 154 aa13.56□□□□□ -0.24
VPS4A-202ENST00000562754 A0A087X0M5 115 aa13.55□□□□□ -0.24
VPS4A-202ENST00000562754 A0A1B0GX30 115 aa13.55□□□□□ -0.24
VPS4A-202ENST00000562754 hCG_1809904A0A1W2PP81 198 aa13.55□□□□□ -0.24
VPS4A-202ENST00000562754 A0A1W2PPE2 198 aa13.55□□□□□ -0.24
VPS4A-202ENST00000562754 A0A1W2PR64 198 aa13.55□□□□□ -0.24
VPS4A-202ENST00000562754 A0A1W2PRV1 198 aa13.55□□□□□ -0.24
VPS4A-202ENST00000562754 CD5LO43866 347 aa13.55□□□□□ -0.24
VPS4A-202ENST00000562754 AVPP01185 164 aa13.55□□□□□ -0.24
VPS4A-202ENST00000562754 IGHV3-7P01780 117 aa13.55□□□□□ -0.24
VPS4A-202ENST00000562754 HOXB4P17483 251 aaPredicted RBP13.55□□□□□ -0.24
VPS4A-202ENST00000562754 TBPP20226 339 aa13.55□□□□□ -0.24
VPS4A-202ENST00000562754 CD34P28906 385 aa13.55□□□□□ -0.24
VPS4A-202ENST00000562754 RNASE10Q5GAN6 216 aaKnown RBP13.55□□□□□ -0.24
VPS4A-202ENST00000562754 VAX1Q5SQQ9 334 aa13.55□□□□□ -0.24
VPS4A-202ENST00000562754 ZNF57Q68EA5 555 aaPredicted RBP13.55□□□□□ -0.24
VPS4A-202ENST00000562754 FAHD2BQ6P2I3 314 aaPredicted RBP13.55□□□□□ -0.24
VPS4A-202ENST00000562754 OVCH2Q7RTZ1 564 aa13.55□□□□□ -0.24
VPS4A-202ENST00000562754 H1FOOQ8IZA3 346 aaPredicted RBP13.55□□□□□ -0.24
VPS4A-202ENST00000562754 TOMM5Q8N4H5 51 aa13.55□□□□□ -0.24
VPS4A-202ENST00000562754 FAHD2AQ96GK7 314 aa13.55□□□□□ -0.24
VPS4A-202ENST00000562754 TMEM133Q9H2Q1 129 aa13.55□□□□□ -0.24
VPS4A-202ENST00000562754 C7orf69Q9H7B7 122 aa13.55□□□□□ -0.24
VPS4A-202ENST00000562754 NECAP2Q9NVZ3 263 aa13.55□□□□□ -0.24
VPS4A-202ENST00000562754 AUP1Q9Y679 476 aa13.55□□□□□ -0.24
VPS4A-202ENST00000562754 LINC00854A0A1B0GVQ3 168 aa13.54□□□□□ -0.24
VPS4A-202ENST00000562754 RNASEK-C17orf49H0YIS7 233 aa13.54□□□□□ -0.24
VPS4A-202ENST00000562754 J3QLI3 93 aa13.54□□□□□ -0.24
VPS4A-202ENST00000562754 SLC31A2O15432 143 aa13.54□□□□□ -0.24
VPS4A-202ENST00000562754 RAB3DO95716 219 aa13.54□□□□□ -0.24
VPS4A-202ENST00000562754 CTXN2P0C2S0 81 aa13.54□□□□□ -0.24
VPS4A-202ENST00000562754 ZNF735P0CB33 412 aa13.54□□□□□ -0.24
VPS4A-202ENST00000562754 AKAIN1P0CW23 69 aa13.54□□□□□ -0.24
VPS4A-202ENST00000562754 OR5H8P0DN80 308 aa13.54□□□□□ -0.24
VPS4A-202ENST00000562754 NFYAP23511 347 aaPredicted RBP13.54□□□□□ -0.24
VPS4A-202ENST00000562754 COX7A1P24310 79 aa13.54□□□□□ -0.24
VPS4A-202ENST00000562754 OR3A3P47888 321 aa13.54□□□□□ -0.24
VPS4A-202ENST00000562754 DYRK1AQ13627 763 aa13.54□□□□□ -0.24
VPS4A-202ENST00000562754 MORN2Q502X0 79 aa13.54□□□□□ -0.24
VPS4A-202ENST00000562754 ZNF660Q6AZW8 331 aaPredicted RBP13.54□□□□□ -0.24
VPS4A-202ENST00000562754 C1orf229Q6ZS94 237 aaPredicted RBP13.54□□□□□ -0.24
VPS4A-202ENST00000562754 ZNF439Q8NDP4 499 aa13.54□□□□□ -0.24
VPS4A-202ENST00000562754 OR10J5Q8NHC4 309 aa13.54□□□□□ -0.24
VPS4A-202ENST00000562754 BORCS5Q969J3 196 aa13.54□□□□□ -0.24
VPS4A-202ENST00000562754 UPRTQ96BW1 309 aa13.54□□□□□ -0.24
VPS4A-202ENST00000562754 SLC6A7Q99884 636 aa13.54□□□□□ -0.24
VPS4A-202ENST00000562754 GINS4Q9BRT9 223 aa13.54□□□□□ -0.24
VPS4A-202ENST00000562754 TOLLIPQ9H0E2 274 aa13.54□□□□□ -0.24
VPS4A-202ENST00000562754 RDH8Q9NYR8 311 aa13.54□□□□□ -0.24
VPS4A-202ENST00000562754 ZNRD1Q9P1U0 126 aa13.54□□□□□ -0.24
VPS4A-202ENST00000562754 ZNF69Q9UC07 566 aa13.54□□□□□ -0.24
VPS4A-202ENST00000562754 IGHV2-26A0A0B4J1V2 119 aa13.53□□□□□ -0.24
VPS4A-202ENST00000562754 HSPA12AO43301 675 aa13.53□□□□□ -0.24
VPS4A-202ENST00000562754 YPEL1O60688 119 aa13.53□□□□□ -0.24
VPS4A-202ENST00000562754 TUSC2O75896 110 aa13.53□□□□□ -0.24
VPS4A-202ENST00000562754 ZBTB25P24278 435 aa13.53□□□□□ -0.24
VPS4A-202ENST00000562754 CEACAM6P40199 344 aa13.53□□□□□ -0.24
VPS4A-202ENST00000562754 INPP1P49441 399 aa13.53□□□□□ -0.24
VPS4A-202ENST00000562754 GNG10P50151 68 aa13.53□□□□□ -0.24
VPS4A-202ENST00000562754 AP3S2P59780 193 aa13.53□□□□□ -0.24
VPS4A-202ENST00000562754 PNKDQ8N490 385 aa13.53□□□□□ -0.24
VPS4A-202ENST00000562754 OR56B4Q8NH76 319 aa13.53□□□□□ -0.24
VPS4A-202ENST00000562754 YPEL2Q96QA6 119 aa13.53□□□□□ -0.24
VPS4A-202ENST00000562754 SMR3AQ99954 134 aa13.53□□□□□ -0.24
VPS4A-202ENST00000562754 HRASLSQ9HDD0 168 aa13.53□□□□□ -0.24
VPS4A-202ENST00000562754 TBC1D24Q9ULP9 559 aa13.53□□□□□ -0.24
VPS4A-202ENST00000562754 PSG11Q9UQ72 335 aa13.53□□□□□ -0.24
VPS4A-202ENST00000562754 A0A1W2PPE3 182 aa13.52□□□□□ -0.25
VPS4A-202ENST00000562754 PLA2G10O15496 165 aa13.52□□□□□ -0.25
VPS4A-202ENST00000562754 AMY2AP04746 511 aa13.52□□□□□ -0.25
VPS4A-202ENST00000562754 CD99P14209 185 aa13.52□□□□□ -0.25
VPS4A-202ENST00000562754 AADACP22760 399 aa13.52□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms